Xenopus laevis (African clawed frog): 100335148
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Entry
100335148 CDS
T01010
Symbol
XB5939409.L, cstf3b, LOC100493745.L
Name
(RefSeq) provisional ortholog of cleavage stimulation factor subunit 3 L homeolog
KO
K14408
cleavage stimulation factor subunit 3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
100335148 (XB5939409.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
100335148 (XB5939409.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
100335148 (XB5939409.L)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Suf
HAT_PRP39_N
HAT_PRP39_C
HAT_Syf1_CNRKL1_N
TPR_14
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_16
TPR_19
TPR_6
VapC50_C
Motif
Other DBs
NCBI-GeneID:
100335148
NCBI-ProteinID:
NP_001165441
Xenbase:
XB-GENE-5939488
UniProt:
Q4A1D1
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Position
4L:complement(13111422..13163371)
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AA seq
719 aa
AA seq
DB search
MMASGEVPAEQAAEYVPEKVKKAEKKLEDNPYDLDAWSILIREAQNQPIDKARKTYERLV
AQFPSSGRFWKLYIEAEVKAKNYDKVEKLFQRCLMKVLHIDLWKCYVSYVRETKGKLPSY
KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN
PMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVP
PQNTPQEAQQVEMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAA
QYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK
THSIYNRLLSIEDIDPTLVYIQYMKFARRAEGIKSGRLIFKKARKDPRTRHHVYVTAALM
EYYCSKDTSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP
EKSGEIWARFLAFESNIGDLASILKVEKRRYTAFKEEYEGKETALLVDRYKFMDLYPCST
SELKALGYKDVSRAKLASLIPDPVVAPSIAPSLKDDVDRKPEYPKPDTSQMIPFQPRHLA
PPGLHPVPGGVFPVPPAAVVLMKLLPPPICFQGPFVQVDEILEVLRRCKLPDTVDEAVRI
ITGGQVEMNLEGNGPVEVNAILNKSVKRPNEDSDDDEEKGSVVPPVHDIYRTRQQKRIR
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgatggcgtctggagaagtcccagctgagcaagctgctgaatatgttccggaaaaggtg
aagaaagcggaaaagaaattggaagacaatccgtatgaccttgatgcatggagcattctc
attcgcgaggcacagaatcagcctatagacaaagcacggaagacgtatgagcgacttgtt
gcccagttcccgagttctggcagattctggaaactttacattgaagcagaggtaaaagca
aaaaattatgacaaagttgaaaagctgtttcagaggtgcctcatgaaagtcttgcacata
gatctgtggaaatgctacgtgtcctatgtgcgagaaaccaaagggaaactgccaagctac
aaagagaagatggcacaggcgtatgactttgctcttgataaaattggcatggaaatcatg
tcctatcagatatgggtcgactacatcaatttcctgaaaggagtagaagcggtgggatca
tatgccgagaaccaaagaattacagctgtgcgcagagtctaccagcgaggctgcgtcaac
cccatgattaacatcgaacagctgtggagggattacaacaagtatgaagagggcatcaat
atccatctggcaaagaaaatgattgaagacagaagcagagattacatgaatgctagaaga
gttgcaaaggaatacgaaacagtgatgaaaggtctagatcgcaatgctccttccgtgccc
cctcaaaacacaccccaggaagcacagcaggtagaaatgtggaagaaatacatacagtgg
gagaagagtaaccctctgcgaacagaggaccagaccctaataacaaaaagagttatgttt
gcttatgagcagtgtttgttggtgctgggacatcatccggacatctggtatgaagctgca
caataccttgaacaatctagcaagctgcttgctgaaaaaggggacatgaacaacgctaaa
cttttcagcgacgaagctgccaatatctatgagcgagcgatcagtacacttctaaagaaa
aacatgttgctttattttgcctacgcagactacgaagagagccgaatgaagtatgaaaaa
acacacagtatatacaacaggttactctccatagaagatattgatcccaccttggtttat
atccagtacatgaaatttgccagaagagcagagggcatcaaatctgggagactgattttc
aaaaaagccaggaaagaccctaggacccgacatcacgtttacgtcactgccgccttaatg
gagtattactgtagcaaggatacatccgtggccttcaagattttcgagttagggctaaag
aaatatggtgacatccctgaatatgttcttgcctatatagactatttgtctcaccttaat
gaggacaataacacaagagtattatttgaacgagttttaacgtctgggagtttgcctcct
gaaaaatcaggtgagatttgggcacgcttcctggccttcgaaagtaatattggagattta
gcgagtatactgaaagtggagaaaaggagatacacggcattcaaggaggagtatgaaggg
aaggagacagcgctgcttgtggatagatacaagtttatggatttgtacccctgctccaca
agtgaactgaaagctttgggatacaaggatgtatcaagagccaaactggcatccctaatc
ccagacccggtggtagctccatctatagctccttcactgaaggacgatgttgaccgaaaa
ccagagtaccccaaacctgacacaagtcagatgatccccttccagccgcgacatttagcc
ccacctggactccatcctgttcctggtggtgtattcccagtccctccagctgcagtcgtc
ttaatgaagctgcttcctcccccaatttgtttccagggcccgtttgtgcaggttgatgag
atcttggaagtcttgcggaggtgcaagctgccagacacagtggatgaggcagtgaggatc
attaccggaggccaggtggagatgaacttagaggggaatggaccagtcgaagtcaacgcg
atactaaataaatccgtgaaaagacccaacgaggactcggatgatgacgaagagaagggc
tcagtggtccctcccgtccatgacatatacagaacccggcagcagaagagaatccggtga
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