Xenopus laevis (African clawed frog): 100380960
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Entry
100380960 CDS
T01010
Symbol
sf3b3.L
Name
(RefSeq) splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
100380960 (sf3b3.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
100380960 (sf3b3.L)
03041 Spliceosome [BR:
xla03041
]
100380960 (sf3b3.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
100380960 (sf3b3.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
100380960 (sf3b3.L)
Spliceosome [BR:
xla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
100380960 (sf3b3.L)
Complex B
100380960 (sf3b3.L)
Complex C
U2 SnRNP specific factors
100380960 (sf3b3.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
100380960 (sf3b3.L)
TFTC complex
100380960 (sf3b3.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
100380960
NCBI-ProteinID:
XP_018113564
Xenbase:
XB-GENE-922001
UniProt:
A0A1L8GLL3
A0A974D5I1
LinkDB
All DBs
Position
4L:69461186..69494628
Genome browser
AA seq
1217 aa
AA seq
DB search
MFLYNITLQRATGISFAIYGNFSGTKLQEIVVSRGKILELLRPDANTGKVHTLLTVEVFG
IIRSLMAFRLTGGTKDYIVVGSDSGRIIILEYHPSKNMFEKIHQETFGKSGCRRIVPGQF
IAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENP
MFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPG
GSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFF
FLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVATAMCVLKTGFLFVASEFGNHYLYQ
IAHLGDDDDEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDEQDSLSPIMSCQIADLANEDT
PQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEYDAYIIVSFVN
ATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPG
KKIIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQ
RSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPEALCIVEMGGAERQDELGERGSI
GFLYLNIGLQNGVLLRTVLDPITGDLSDTRTRYLGSRPVKLFRVKMQGQEAVLAMSSRSW
LSYSYQSRFHLTPLSYETLEYASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFP
LQYTPRKFVIHPESNNVIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAA
AFLNENLPESIFGSPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFTNTG
DDWYVLVGVAKDLILNPRSVAAGLVYTYKLVNNGEKLEFVHKTPVEEVPSAIAPFQGRVL
IGVGKLLRIYDLGKKKLLRKCENKHIPNFIVGIQTIGQRVILSDVQESLIWVRYKRNENQ
LIIFADDTYPRWMTTSCIMDYDTVAGADKFGNICIVRLPSNTNDDVDEDPTGNKALWDRG
LLNGASQKAEVIVNYHVGETILSVQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDF
FQHVEMHLRSEHPPICGRDHLSFRSYYFPIKNVIDGDLCEQFNSMEPAKQKSVAEELDRT
PPEVSKKLEDIRTRYAF
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgtttctttacaatattaccctacagagggccacaggcataagctttgccatttatggc
aacttttcaggaactaaattgcaggaaattgtagtttcacgtgggaaaattttggagttg
cttcgacctgatgccaacactggtaaagtgcatacacttctgactgtggaggtgtttggt
attatacgctctcttatggctttccgcttgactggtggcacaaaggattatattgtagta
ggcagtgactcagggcgcattatcatcctggagtaccatccttctaagaacatgttcgaa
aagatccaccaggaaacctttggaaagagtggctgtcggaggattgtacctggccagttc
attgcagtggatcccaaaggcagagctgtaatgataagtgcaattgagaaacagaaatta
gtatatattctaaacagagatgcggcagctcgactcacaatctcttcaccactggaggca
cataaggctaacactctagtgtaccatgttgtaggagttgatgttggttttgaaaaccct
atgtttgcctgcctggagatggattatgaggaagctgataatgatccaactggagaagca
gcagccaacacacagcagacactgacattttatgagttggacctgggactgaaccatgtt
gtgcggaagtacagtgagcccttggaagagcatggaaacttcttaattacagttcctgga
ggatcagacgggcccagtggagtgctcatttgttcagaaaactacatcacatataaaaat
tttggagatcagccagatattcgctgtcctattcctaggagacggaatgacctggatgat
ccggaacgtggcatgatatttgtctgctccgccacacacaaaaccaaatccatgtttttt
ttcttggctcaaactgagcaaggagatatcttcaagattacattagaaactgatgaggac
atggtaacagaaatccgcctgaaatattttgacaccgttccagttgcaacagctatgtgt
gtgcttaaaactggctttctctttgtggcttcggagttcggaaaccattacctctaccaa
attgctcacttgggtgatgatgatgatgagccagagttctcctctgctatgccccttgag
gaaggagatacttttttctttcagccacgccctttgaagaaccttgtgcttgttgatgaa
caggacagcctctcccctattatgtcctgccagattgctgacttggccaatgaagacacg
ccccagctatatgttgcttgcggtcgagggccacgatcatctctccgggtcctgaggcat
ggacttgaggtgtctgaaatggctgtctctgagctgcctggtaatcccaatgctgtatgg
actgttaggaggcacatcgaagatgaatatgatgcttatatcattgtgtctttcgtgaat
gccactctggtactctctattggtgaaactgtagaagaagtgacagattctggttttctt
gggactactccaactctctcctgctccctactgggtgatgatgctttggttcaggtgtat
cctgatggcatcagacacatacgtgcagacaaaagagtaaatgagtggaaaacaccaggc
aaaaagatcattgtgaaatgtgctgtaaatcagcgtcaggtagtgattgctctgactgga
ggagagctggtgtactttgagatggatccttctgggcagttaaatgagtacacagaaaga
aaagaaatgtcagctgatgtggtatgcatgagtctggctaacgtaccccctggagaacag
cgctcccgattcttggccgtggggcttgttgataacactgttcgcatcatcagtcttgac
ccttcggactgcctgcagccactcagtatgcaggcattgcccgcacagccagaggccctg
tgtattgtagagatgggtggtgcagagagacaggatgagctgggagaacgtggctctatc
ggtttcctttacctcaacataggccttcagaatggagtgttgcttagaacagtcttagac
ccaattactggtgatctttctgatacccgaactcgatatcttggctctcgacctgtcaaa
ctcttccgagttaaaatgcaggggcaggaggcggtcctggcaatgtcaagtcgctcctgg
ttgagctactcttatcagtcacgcttccacctcaccccactttcatatgagaccctggaa
tatgcctctgggtttgcatctgaacagtgtcctgaaggaattgttgctatttctacaaac
acactgaggatcttggcattggagaaattgggagccgtgtttaaccaggtggctttccca
cttcagtatactccacgcaagtttgtcattcacccagaaagtaacaatgttatcatcatt
gaaacggatcataatgcttatactgaggctacaaaagcccaacgcaaacaacagatggca
gaggaaatggtagaggcagcaggggaggatgaaagagaactggcagcagagatggcagct
gcattcctgaatgagaatctgccagagtccatctttggctctcccaaggctggcaatggc
cagtgggcatcagtcattcgtgtaatgaaccctatccagggaaatactcttgatttggtg
caactggaacaaaatgaggctgctttcagtgtggcagtgtgccgcttcacgaatactgga
gatgactggtatgtcttggtgggggtggctaaagaccttatcctgaatcccagatctgtt
gctgctggattagtatacacttacaaactggtgaataacggagaaaaattggaatttgta
cacaagacacctgttgaggaggtcccttcggcaattgcaccttttcaggggcgggttttg
attggagttgggaagttgttgaggatatatgaccttggaaagaagaagcttctgcgaaaa
tgtgaaaataagcacattcccaactttattgtgggaatacaaactattgggcagcgtgtg
atattgtctgatgtgcaggagagtttaatatgggtgcgttacaagcgcaatgaaaaccag
ctgattatatttgctgatgacacatacccacgctggatgacaacctcctgcatcatggac
tatgacacagtggctggagcagacaagtttggaaatatctgcatagttcgtttaccttct
aataccaatgatgatgttgatgaggatcctactggtaacaaagcattatgggacagaggt
cttctgaatggagcatctcagaaggctgaagtaattgtaaattaccatgtgggagagact
attctttcggtacagaagactacactaatcccaggaggctcggaatccctggtgtacact
accttatcaggaggcatcggtatccttgtaccattcacatcacatgaggatcatgatttc
ttccagcatgtggaaatgcatctacgttcagagcatcctccaatctgtggtagagaccac
ttaagcttccgctcatactacttccctatcaagaatgtgatagatggggatctttgtgaa
cagttcaattcaatggagccagccaaacagaaaagtgttgcagaggaactggaccgaaca
ccacctgaagtttccaaaaagcttgaagacattcgcacccgttatgccttttaa
DBGET
integrated database retrieval system
