KEGG   Xenopus laevis (African clawed frog): 100380998
Entry
100380998         CDS       T01010                                 
Symbol
ncbp2.L, CBP20-X, ncbp2
Name
(RefSeq) nuclear cap binding protein subunit 2 L homeolog
  KO
K12883  nuclear cap-binding protein subunit 2
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03013  Nucleocytoplasmic transport
xla03015  mRNA surveillance pathway
xla03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100380998 (ncbp2.L)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100380998 (ncbp2.L)
   03015 mRNA surveillance pathway
    100380998 (ncbp2.L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:xla03019]
    100380998 (ncbp2.L)
   03041 Spliceosome [BR:xla03041]
    100380998 (ncbp2.L)
Messenger RNA biogenesis [BR:xla03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     100380998 (ncbp2.L)
Spliceosome [BR:xla03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    100380998 (ncbp2.L)
SSDB
Motif
Pfam: RRM_1 RRM_occluded
Other DBs
NCBI-GeneID: 100380998
NCBI-ProteinID: NP_001167476
Xenbase: XB-GENE-1005792
UniProt: P52299 A0A974CY90
LinkDB
Position
5L:complement(112898983..112903165)
AA seq 153 aa
MALSALRSDSYVDLSQYRDQHFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKS
GDVKRIVMGLDKVKKTACGFCFVEYYTRADAEQAMRFINGTRLDDRIVRTDWDAGFKEGR
QYGRGKSGGQVRDEYRQDYDAGRGGYGKVVQSF
NT seq 462 nt   +upstreamnt  +downstreamnt
atggcgctaagtgccctaaggagcgattcgtatgtggatctgagtcagtatcgggaccag
cacttccggggaaaccgatctgatcaggagtctctgctgaagcaaagctgcaccttgtat
gtaggaaacctttcattttatacaacagaggaacaaatccatgaactgttcagcaagagt
ggagatgttaaaagaattgtaatgggacttgataaggtcaaaaagactgcctgcggattc
tgttttgtcgaatactatacaagagcagatgcagaacaagcaatgaggttcatcaatgga
acacggctagatgatcgaatcgtcagaacagactgggatgcaggatttaaggaagggaga
cagtatggacgtgggaaatcaggtggtcaggtcagagatgagtaccgccaagactacgat
gcaggacgcggaggctatggaaaagttgttcagtcgttctga

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