Xenopus laevis (African clawed frog): 108695393
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Entry
108695393 CDS
T01010
Symbol
abca1.L
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla02010
ABC transporters
xla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
108695393 (abca1.L)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108695393 (abca1.L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
xla02000
]
108695393 (abca1.L)
Transporters [BR:
xla02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
108695393 (abca1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DrrA1-3_C
AAA_23
Motif
Other DBs
NCBI-GeneID:
108695393
NCBI-ProteinID:
XP_041419649
Xenbase:
XB-GENE-17333710
UniProt:
A0A8J1KTU2
LinkDB
All DBs
Position
1L:complement(129841684..129923670)
Genome browser
AA seq
2312 aa
AA seq
DB search
MTYCTQLGLLLWKNFTSRRRQTLQLVVEVAWPLFIFFILISVRLSYPPYEQHECHFPNKA
MPSAGTLPWVQGIICNANNPCFRYPTPGESPGVVGNFNRSIVSRLFSDARKLLLYSRKDT
SVKDMHKFLGNLHSYRGTGLKLRDCLMDNEKFTDFLLKNMSMPAVAVEEIMNAHLKPEQV
LVSGFQIHLKDLCNGTRLEEYVTFHNEVVANLSQKIICALPEEKLNLLEQEFRSNIDLLK
PITKEFSSKSFPFLKDITDSLLHSLSDLAKEVMTMKSWAEMRQEVMFLTSGNATASPSTL
YQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGGEGDNSTDEDSQAAYDNSTTPYCN
DLMQNLESSPLYRMIWRALKPLLVGKILYTPSTPATQMLMSEVNKTFQELSVFRDIGAMW
EEVRPQIKYFMESSQEVDLIRTLLTNKGSKTFLDQQLNSTGWTTENISKFLAKETADAEA
ESGPSYSWREALNETDRVVLTLSRFMECVNLDKLEPVATEEKLIDKSMELLNERKFWAGI
VFMDMPTEETELPHHVKYKIRMDIDNVERTNKNKDGYWDPGPRADPFEDMRYIWGGFSYL
QDVVEQAIIRVQTGVEKRTGIYVQQMPYPCYVDDIFLRVMSRSLPLFMTLAWIYSVAVII
KGIVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLMSAALLVLILKTGNLLPYSDPS
VVFVFLSVFAVVTISQCFLISTIFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVSFTLK
IFASFLSPVAFGFGCEVFALFEEQGVGVQWDNLLESPLDEKGYNITTSCFMMLCDTLLYG
IMTWYIEAVFPGQYGIPRSWYFPFTKSYWCGEESKEYNQPRAVHKGSSEVCMEEEPSHLP
LGVSIQNLVKIYRNGKKVAVDGLTLNFYEGQITSFLGHNGAGKTTTMSILTGLFPPTTGT
AYIMRKDIRTELSSIRKNLGVCPQHNVLFDMLTVEEHIWFYARLKGHSEEKVKAEMEQML
NDVGLPHKKKYKTSQLSGGMQRKLSVALAFVGGSQVVILDEPTAGVDPYSRRGIWELLIK
YRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNHLGTGYYLTLVKRDTDS
SLSSCRNSSSTMSCPKKECSKQTTACKQQPSPMIAAPSASGTTGAVITKHSKHTAGQKKE
AKDREDSVSQSSSDAGLGSDHESDTMTIGLTDVSAISNLINKHVPKARFVEDIGHELTYV
LPYEAAREGAIVELFHEIDDRLSDLGISSYGISDTTLEEIFLKVAEDTGVDTETADGTLP
ARRKRYAFGDRQSCLRPFTEDDAFDTNDSDMDPESRETDYLSVIDGKGSYQVKSWNLMRQ
QFTALLWKRLLYAKRSRKGFFAQIVLPAVFVLIALVFSLIVPPFGKYPSIELEPWMYDEQ
YTFFSNDAPDDLGTQALLKALTDKPGFGTACMEGNSNMKVSCSDGEEEWSTQFVSQSVID
LFLNGNWTMENPSPSCECSSDKSKKMLPVCPPGAGGLPPFQRRQNTSDILQDLTGRNISD
YLVKTYSQIIEKSLKNKIWVNEFRYGGFSLGASNSPELPPNEDVVASINHIKKQLELAQN
GAANRFLDSFGTFMKGLDTKDNVKVWFNNKGWHAVGSFLNVMNNAILRSKLREGEDPASY
GITAFNHPLNLTKEQLSEVALMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHM
QVISGVKPVIYWLANFVWDMCNYVVPATLVIIIFICFQQDSYVSSSNLPVLALLLLLYGW
SITPLMYPASFIFKIPSTAYVVLTSVNLFIGINGSVATFVLELFTNNKLNNINEILKSVL
LIFPHFCLGRGLIDMVKNQAMADALERFGENRFVSPMSWDLVGRNLFAMAVEGVVFFAIT
LLIQYRFFIKPRPVNAKLPPVVDEDEDVARERQRINEGGRNDILELKGLTKIYRMKRKPA
VDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTDVTAGEAFLKNHSILSNIHEVHQNM
GYCPQFDAINELLTGREHLELYALLRGVPEKEVCKVAEWAIHKLGLVKYSEKHAGNYSGG
NRRKLSTAIALIGGPPVVFLDEPTTGMDPKARRFLWNCALSVIKEGRSVVLTSHSMEECE
ALCTRMAIMVNGRFKCLGSVQHLKNKFGDGYTIIVRIAGSNPDLKPVEEFFSHAFPGSVL
KEKHRSMLQYQLRSSQSSLARIFSILSKNKKRLHIEDYSVSQTTLDQVFVNFAKDQSDDD
QKDLSLHKNQTVVDVALLTSFLQDEKMKESCV
NT seq
6939 nt
NT seq
+upstream
nt +downstream
nt
atgacttactgcacccaactggggctgctgctatggaagaatttcacttccaggaggaga
cagacactgcaactagtggttgaagtggcttggcctctctttattttctttatcctgatc
tctgttcggctgtcttaccccccatatgagcaacatgaatgccatttcccaaataaggcg
atgccatcggcaggaaccctgccgtgggttcaaggaattatttgcaatgccaataatcca
tgctttcgatatccgacacctggagaatcaccaggagttgtgggaaatttcaatagatca
attgtctcccgtctgttttccgatgcaaggaaattgctgctatacagtcgcaaggacacc
agtgtgaaggatatgcacaaattcctaggaaatttacatagctaccgtggtacaggttta
aagcttcgagactgcttaatggataatgaaaaatttacagattttctccttaaaaatatg
agcatgcctgcagttgcagttgaagagatcatgaatgctcatctgaaaccagaacaggtt
ttggtgtcgggcttccaaatacatctgaaagacctgtgcaatggcacgcggctagaagaa
tatgtaacttttcacaatgaagtggttgcgaatcttagccaaaagataatctgtgctctt
ccagaagagaagcttaacctgctggagcaggaattccgttccaatattgacctcctaaag
cccattacaaaggaattctcctccaagtcttttccatttttgaaagacatcacagatagc
cttttgcacagcctgtcagatcttgccaaagaggtcatgaccatgaagagctgggcagaa
atgagacaagaggtgatgttcctaaccagtggcaacgccacagcttcaccaagcacccta
taccaagcagtatcacgtattgtgtgtggccaccctgaaggaggaggactaaagattaag
tctctcaactggtatgaagataataattacaaggcactatttggtggaggagaaggcgat
aatagcactgatgaagactcacaagctgcgtatgacaactctacaactccatattgcaat
gacctgatgcagaatctggaatccagcccactctacagaatgatttggagagcactaaag
cctttgcttgttggcaaaatcctttatactcccagcactccagccacacaaatgctaatg
tctgaggtcaacaaaacgttccaagagctaagtgttttccgggatattggagcaatgtgg
gaagaggttcggccacagatcaagtacttcatggaaagcagccaggaggtggaccttatc
aggactctcttgaccaacaaaggaagtaaaacattcttagaccaacaactaaactcaact
gggtggacaaccgagaacatatccaagtttctggccaaagaaacagcagatgcagaggct
gaaagtgggccatcctattcttggagagaagctttgaatgagactgaccgtgttgtcctg
actttgtcacgcttcatggagtgtgtcaatttggacaagttggaacctgtggctactgaa
gagaagctcattgataagtcaatggaacttctcaatgagaggaaattctgggctggaatt
gtgtttatggatatgcccacagaagaaacagagctcccacaccatgtcaaatataagatc
cgaatggatatagataatgtggagagaaccaacaagaataaggatggatactgggatcct
ggtcctcgtgctgacccatttgaagacatgcggtacatctggggaggattttcttacctt
caagatgttgttgaacaggctataatcagggtacagactggggtagagaagaggactggc
atctatgttcagcagatgccctacccatgctatgttgatgacatattcttaagggttatg
agccgatcactgccattatttatgaccttggcatggatatattctgttgctgtaatcatc
aaaggcattgtctatgaaaaagaggcccgtctgaaagagaccatgaggattatggggttg
gacaatggcatcctgtggctgagttggtttatcagcagtttgatcccgcttcttatgagt
gcagcactcttggtgttgatcctaaagacaggaaaccttctgccttacagtgatcccagc
gtagtgtttgttttcttgtctgtctttgcggtggtgacaatttctcagtgcttcctgatc
agcacaatattctccagagccaatttggcagcagcctgtggtggaattatatatttcaca
ctataccttccctatgtgctgtgtgttgcttggcaagactatgttagcttcacactaaag
atttttgctagttttctgtctccagttgcctttgggtttggctgtgaggtctttgcactt
tttgaagaacaaggtgttggtgtgcaatgggataaccttttagaaagtccattagatgaa
aagggatacaacatcactacatcatgcttcatgatgctctgtgacactcttttgtatgga
attatgacctggtacattgaagcggtctttccaggtcagtatggcattcccaggtcatgg
tattttccattcacaaaatcctactggtgtggcgaggaatccaaagaatacaatcaacca
cgggctgttcacaaaggatcatctgaggtctgcatggaagaagaacctagtcaccttcca
cttggggtttctattcagaacctagtgaagatttatcgtaatggcaaaaaagtggctgta
gatggactcacactgaatttctatgaagggcaaatcacttccttcctgggacacaatggt
gctggaaagactactacaatgtccatattaactggccttttcccaccaacaactggtaca
gcctatattatgagaaaggatatccgaaccgagctcagctcaatcaggaagaacctaggt
gtttgcccacagcataacgtactttttgatatgctcacagtcgaggagcacatctggttt
tatgcacgcctgaaagggcattcagaagagaaggtgaaggcagagatggaacagatgctt
aatgatgtggggctcccccataaaaagaagtacaaaacaagtcagctgtcaggaggcatg
cagagaaaactttccgtggccctggcctttgtgggtggatcacaggttgtcattctggat
gagcccacagctggagttgatccatattctcgccggggtatctgggagctgcttattaaa
tacagacaaggaagaactattatcctatcaacccatcatatggatgaagcagacatcctc
ggagacagaattgctattatttcccatggaaagctgtgttgtgtgggatcctcgcttttc
ctgaaaaatcacctgggaactggatactaccttaccttggtcaagagagacactgactct
tctctgagctcctgtaggaacagtagcagcactatgtcttgtccgaaaaaggaatgcagc
aagcaaaccactgcttgcaaacagcagccgagtccgatgatagcagcaccatcagcatct
gggaccacaggagcggtgattactaaacatagcaaacatacggcggggcagaagaaagaa
gccaaagatagggaggacagtgtttctcagagcagttcagatgctggcttgggcagtgac
catgaaagtgacacaatgacaataggtctcacagatgtatcggctatttcaaatcttatc
aataagcatgtacccaaagcaaggtttgtagaggacattggacacgagctgacctatgtg
ttgccctatgaagcagccagagaaggagcaattgtggaactcttccatgaaatagatgac
cgtctttctgacctgggcatttccagctatggaatttctgacaccacactagaagagatt
ttccttaaagtggctgaagatactggagtcgatacagaaacagcagatggaacactgcct
gctagaagaaagagatatgcatttggtgaccgtcaaagttgccttagacctttcactgaa
gatgatgcttttgacaccaatgattctgacatggatccagagtcacgggagacagattat
ttgagcgtaattgatggcaaaggatcctaccaggtaaaaagctggaacctaatgaggcaa
cagttcacggccttgctctggaaaagattactgtatgcaaagcgcagcaggaaaggcttt
ttcgcacagattgtccttccagcagtgtttgtcctcatcgcattggtgttcagtcttatt
gttcctccttttggcaaatatcccagcattgaattagagccctggatgtatgatgaacaa
tatacgtttttcagcaatgatgcgccggatgacctaggaactcaagctctcttgaaagcc
ctgactgataaaccaggttttggaacagcttgtatggaaggaaactcaaatatgaaagtc
tcatgctcggatggagaggaagaatggagtactcagtttgtatcacagtcagtcatagat
ctgtttctgaatggcaactggaccatggaaaatccatctccatcctgtgagtgcagcagt
gataaaagcaagaagatgcttcctgtttgtccaccaggggcaggaggtttacccccattt
cagaggagacaaaacacttcagatattttgcaagatctaacaggacggaatatatctgat
tatcttgtaaaaacgtactcacagatcattgaaaagagcttgaaaaacaagatctgggtt
aatgaattcaggtatggaggtttctctctaggtgcaagcaattcaccagaattacctcct
aatgaagacgttgtggcatccattaaccatataaagaaacaacttgagctagctcagaat
ggagcagccaatcgatttcttgacagttttggaactttcatgaaaggactggacacaaaa
gataatgttaaggtgtggttcaataataaaggatggcatgcagtcggttcatttcttaat
gtaatgaacaatgccatattaagatcaaaactgcgggagggagaggatccagcctcatat
ggcattactgcgttcaaccaccctctgaatcttaccaaggagcagctttctgaagttgca
ctgatgaccacatcagttgatgtcttggtttccatctgtgtgatatttgcaatgtctttc
gtgccagccagctttgtggttttcctgatccaggagagagtcagtaaggcaaagcacatg
caggtcatcagtggagtaaaaccagttatctattggttggccaactttgtctgggatatg
tgtaactacgtggtgccagctaccctggtcatcataatattcatctgtttccagcaggac
tcttatgtctcttcctctaacttacctgttttggcacttcttctccttctgtatgggtgg
tccataacccctctcatgtacccagcttccttcattttcaagatccccagcacagcctat
gtagttctgaccagtgtcaatcttttcattgggatcaatggcagtgtggccacgtttgtg
ctggaactctttaccaacaataaactgaacaacataaacgagatactgaagtctgtgctc
ctgatctttcctcacttctgcctgggtagaggactcattgatatggtgaaaaatcaggcc
atggctgatgctcttgaaagatttggagagaaccgctttgtctcccctatgtcttgggat
ttggttgggaggaacttatttgcaatggctgtggagggtgtcgtgttttttgctatcacc
ctgttgatccagtatcggttcttcatcaaaccaaggccagtgaatgcaaagcttcctcct
gtggttgatgaggatgaggacgtggcaagggagcgtcagaggataaatgaaggtggacgg
aacgatatactagaactcaaaggacttactaagatctatagaatgaagagaaagccagct
gtggataggctttgtgttggaatcccaccaggagagtgctttgggctgctaggggtgaat
ggtgcaggaaagacgaccacatttaagatgttgactggagatactgatgtgacagctggg
gaagctttcctaaaaaaccatagcatcctgtcaaatatacacgaggttcaccagaacatg
ggctactgcccccagtttgatgccattaatgagctactgactggaagggagcatctggag
ctttatgccctgttacgcggagtccctgagaaagaggtttgcaaggttgctgaatgggcc
atacataaattgggcctagtcaagtactcagaaaaacatgcaggcaactacagtggtgga
aacagacgcaaactttctacagctattgccttgattggaggacctccagtggtatttttg
gatgagccaacaacaggcatggacccgaaagctcgacgcttcctgtggaactgtgccctt
agtgtcattaaagaaggaagatcagtggtgctaacttcacacagtatggaggagtgtgaa
gcactgtgcacaagaatggccataatggttaacgggagattcaagtgtcttggaagtgtc
cagcatctgaaaaacaagtttggagatgggtataccattattgtccgaatagcaggctcc
aaccctgacctcaagcctgttgaagagttctttagccatgccttccctgggagtgtactg
aaggaaaagcaccggagcatgctccagtaccagctccgctcctcacagtcttccttggcc
aggatattcagcatcctctccaagaacaaaaagagacttcacattgaagattattctgtc
tctcagacgactctagaccaagtatttgtaaactttgccaaggaccaaagtgatgacgat
caaaaggacctgtcattgcacaaaaaccagactgttgtagatgttgccctcctaacatct
ttcctgcaagatgagaagatgaaggaaagctgcgtgtga
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integrated database retrieval system
