Xenopus laevis (African clawed frog): 108696087
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Entry
108696087 CDS
T01010
Symbol
jmjd1c.L
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108696087 (jmjd1c.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108696087 (jmjd1c.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
C1_2
FYVE
zf-C5HC2
Motif
Other DBs
NCBI-GeneID:
108696087
NCBI-ProteinID:
XP_018080603
Xenbase:
XB-GENE-6486446
UniProt:
A0A8J0TAD5
LinkDB
All DBs
Position
7L:complement(12643623..12870268)
Genome browser
AA seq
2505 aa
AA seq
DB search
MALGVRPELVGKRFVCLVLGGGEEPPEIGQIGRWGWRAGVIRAVSHRDNDNPELAVYVEF
DDLEWDKREWVKVYEDFTAFFVEYQLVWAKREDPGQSQGSKVKHIQWPALAFKPLVGKGV
YNSITAIEFLVERHLEFETEDSAFQPYQDEVDSLNPVLRDNPQLHEEVKAWVKEHKVQEI
FMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRTMIVMNDQVLEPQNVDPSMVQMT
FLDDVVYSLLKGENIGITSRRRSRSNQNSNTIHGHYTRAQANSPRPAMNSQSSTSKQGQQ
HRNARLNKRKGSDSSMPDEDRVKEERYDGTENLKRNKHFHSKRRKPEEDEKKLILKRLRA
DNISDFSESSDSENSNKRIIDSSSEQNSENELKSKNTSKINGDEGKSQSSDGAEEQTLID
RHSPWDEIQDDKKEAERMKSAESQLQEDNPPFHLSEQTALYEQNPNHPHVLDSVAEKNNT
TELLQVESLCTKAPTPKNAIVLNNENNGNEAAQESGSGTFDSQPVPKVELQSGELKSSYG
SINFSDIKKQDPEHAWNEMNSKGDLAHSGVLKNCQSAKEAHEREKIQHGSVIGCTSLTDE
QKRLQKQTLDAMKAKPHIPEVSSKIKYTASPDGLKSRSVHSPDLVKQKVNYYNSQTSGIV
RSSGKLDCDLHRSSFHPVATRVSAIESIKSPLIIDKNEHFTVYRDPALVGPETAANHLSS
YLHQHNFALHSPAHRTCLPPNSHHPALTGNPHLLTSSSNQASIAAINSHPLGSASHHPVH
HSHLLPAVLPGMNPGSLLGGHPQLETAHASSLSHLALAHQQQQQMLQHQSPHLLGQAHPS
ASYNQLGLYPIIWQYPNGSHAYSALGLPSSKWVHTENHVGAEASMRRNTASPWLHQPTPV
TSAESLLIGHLPVRPSSADAHRPIKLHSSPPLSKAAAEHHKEDIDKKPFSDPLRSIATIK
SEHEHGRTHAGKESHLHRHYMEPVLSHSKLHRSHQDSGERTNKYKEDHRRILQENTEASP
FPMKGKAHENERDSYPRVTPIVSSSPKSHTVKQENNVDRHINELYKLKNSVSQNLPQSNY
FTTLSNSVVNDPPRSFASKEVVNLYPEKQNSAPSSANSYMSSLSRPPPLIKHQPEEATVG
KLNEQLSQQVASHTITSYRGDSRSPTQLSISSTNPLRSMPALHRAPVFHPPIHHSLERKD
ASYSNLSPPTLTPVQPVSTGSKIQELQKPPTLVPELKEGSSTYKKISEKSIQDGWKTNEK
QNHNKVWIPEKNNGKTQSATASVIVRPSSIAKYDPIPIAQTLPKERVVDKPGVNQIDCIK
PLESRETVRNIQPTVNSDSAHVNLEKSSPVPSVAPAASIMCSTKTDVTTSAPTTTSVSSS
SESEVTYSLSNYSVSACAVIECNTSKAGNPTSAQNPESQLINPAPVTPVSGKAISAIQPN
VAYSSSTDFIHLKKHKAALAAAQLKSTNASETEPSAVKNPKLPASSSPDSNVACSSANAS
STLGNGPVAQPNYHTKLKKAWLTRHSEEDKNINKPESTGSTLVSEIIKPCTVNLIASTSG
ELQNNIDLRAQDDKSPKEDRLTRRRVKRTYESGSESEDSDGSESRSGQRLKRQPKPTYKK
KQNDMQRRTNTDKEEEIKPNGILSRIAKEKSKLKLQSNNSSTGIPRSVLKDWRKVKKLKQ
TGESFLQDDSCCEIGPNLQKCRECRLIRTKKGEESTHSPVFCRFYYFRRLSFSKNGVVRI
DGFSSPDQYDDESLSLWSHEHYEDEELDLETVKYVLAYIGDKFCQLVTSEKAAMSWVKKD
AKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKEMKISRDKELYTWMK
CVKGQPHDYKHLMPTQIIPSSVLTDLLEAMHHLRDRFEIQSHCHCVSKQSPQAPKYPPMN
GVSQVLQNVLNHSNKISLCLPESPNQNSPQKPETNGNASPGSDSSSDSKLTSSESHSSLH
WLADLAEQKSREEKKENKECLSGKHIKEERDQDISETVNCKSSSPPANEPGSTLRDLLTT
TAGKLRLGSIDAGIAFAPVYSATNPCNRGGRSMPNILDDIIASVVENKIPATRTPKPVVQ
PEPKEEVSEVPLEEAEKEKQEIPHSWICERHILWLKEHRHIHNWKMFQECWKQGKTVVVS
GTHKRMNANLWKLEAIGNDFGDHQGDLLNCKEGILSSGNVKEFWDGFEDVSKRQKVKNGE
TVLLKLKDQPSGEDFKNMMAARHEEFFKMLPVPEYCNPDGKFNLASHMPAFFVRPDLGPR
MCSAYGVIATKDQDTGTTNLHIEVSDLVNILVYVGAAKGLGVTSKSGVLKKFEEEELDED
LRKRLKDSSEVPGSLWHIYETRDADKIREFLHKAAKEQCLEILPDHDPIRDQNWYLSKKL
RQSLLEDYGVKSYTLVQFLGDAIILPAGAIYQVQNFHSCIQVTQDFVSPEHLVQSFHLTQ
ELRHSKEESNYDDKLQVKNILYHSVKEMVRALKIQEEDMEEMEDC
NT seq
7518 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggagtgcggccggagctcgtagggaagcgcttcgtctgtttggtcctcgga
ggaggagaggagccgccggagatcgggcagatcggtcgctggggctggagagccggagtt
atccgagcggtgtctcacagggacaacgacaacccagaattggcggtgtatgtggaattt
gatgacctggaatgggataagcgagagtgggtgaaagtatatgaagattttacagccttt
tttgtggagtaccagctggtctgggctaagcgagaagaccccggccagtctcagggatca
aaggtcaagcacatccagtggcctgcattggcatttaagcccctggttggaaaaggtgta
tataattcaattactgcaatagaattcttagtagagagacacctggagtttgaaactgaa
gatagtgcctttcagccctatcaggatgaagtagatagtctcaacccagttctcagggat
aaccctcagcttcacgaggaggtgaaagcctgggtaaaagaacataaggttcaggagatt
tttatgcaaggtccgtattccttaaacggctatcgagtgagggtatatagacaggactct
gccacccagtggttcactggtataatcactcatcatgatctcttcacccgcactatgatt
gttatgaacgaccaggtactagagccacagaatgttgacccttctatggttcagatgacc
tttctagatgatgtggtttactctttgttgaaaggagaaaatattggtatcacatctcgc
cggaggtctcgctccaatcagaacagcaacacaattcatggtcattacacacgtgcacaa
gccaacagtcccaggccagcgatgaactctcagagctccacatccaagcaaggtcagcag
cacaggaatgcccgtctaaacaaaaggaaaggatcggacagcagcatgcctgatgaagat
agagttaaagaggagagatacgatggcacagaaaatctgaagaggaacaaacatttccac
agcaaaaggaggaaacccgaagaggatgaaaagaaattaattttgaaaaggctgcgcgcg
gacaatatttcagacttttcagagagcagcgactccgaaaattcaaataaaaggataata
gattcttcctcggagcaaaattccgagaacgagttgaaaagcaagaacacttcaaagata
aatggagacgagggaaaatcccaaagtagcgacggggctgaggaacagacactaatagat
agacattctccctgggatgaaatacaggacgataaaaaggaagccgagaggatgaagtca
gctgagtcccagctgcaggaagataatcctccgtttcacttatcggaacagacagcactt
tatgagcagaatcccaatcacccacatgttctagatagcgtagcggagaagaacaacact
acggaattgttgcaggttgagtcgctctgcaccaaagctcccacgccaaaaaatgccatt
gtcttaaataatgaaaacaatggcaatgaggctgcccaagaaagcggctccggcacgttc
gactcacagcccgttcccaaagtggagttacaaagcggcgaattaaagtcttcctacgga
agtatcaatttttcggatataaagaagcaggatccagagcacgcgtggaacgagatgaac
agcaagggagatttagcgcattcgggggttttaaagaattgccagtcggccaaggaggcc
cacgagagggagaaaatccagcatggctctgtgattggttgcacttccctaacggatgag
cagaagaggcttcagaagcaaaccctggacgctatgaaggccaaacctcacatcccagag
gtttcaagtaaaataaagtacaccgcctctcctgatgggttaaagtcgcgctccgtccac
tccccagacctcgtcaagcagaaagtgaattactataacagtcagacatctgggattgta
aggtcctccggcaagttggattgcgaccttcaccgatccagttttcacccggtggccacc
agagtgagcgccattgagtctattaaaagtcctcttatcattgacaaaaatgaacacttt
accgtttacagggacccagcacttgttggaccagagactgcagctaatcacttatcttct
tatttgcaccagcataactttgctcttcattctccagctcatcgaacatgtttacctcca
aacagccatcacccggcattaacaggaaaccctcatctactcacatcctcctcaaaccaa
gcatctatagctgctattaatagtcacccgcttggcagtgcatcacatcatccggttcat
cattctcatttgctaccggcagtgttacctggcatgaacccaggttcattactaggtggc
cacccacagctagagactgcacacgccagcagccttagtcacttggcattggcacatcaa
cagcagcagcaaatgttacagcatcagtctccacaccttctcggccaagctcacccttcg
gcttcttacaaccagctgggactttatccaatcatctggcagtatccaaatggaagccat
gcttactccgctcttggtctgccatcgtcaaaatgggttcataccgagaatcatgtcggt
gctgaggcctccatgagacggaacactgctagtccctggctgcaccaacctacacctgtg
acttcagcagaaagtctcctaatcggtcacctacccgtgcgcccatccagtgcagacgca
caccggccaatcaagctgcactcgagcccccctttgtccaaagcagcagcagaacaccac
aaggaagatatcgacaagaaacctttcagcgatcccttgcgctcaattgcaacgataaag
tctgaacatgaacacggccggactcacgctggcaaagagagccatttacacagacattat
atggaacctgtcctgagccactctaagctgcaccggtcccaccaggattccggagaaagg
acaaataaatacaaagaggatcataggcgaattcttcaggaaaatacagaagcgtctccc
tttccgatgaaggggaaagcacacgagaacgaacgggacagttaccccagagtcactccc
atcgtctcctccagccccaagagccacacagtgaaacaggagaacaatgtcgatcgccat
atcaacgagctgtataaactgaagaactctgtctctcagaatttgccgcaaagcaactat
tttaccaccttatccaacagcgtggtgaatgatccgccacggtcgtttgcatcaaaggag
gtggtgaacttgtacccggaaaagcagaattcagccccgtcctctgccaattcctacatg
tcgtccctctccaggccgccgccgcttatcaagcaccagcctgaagaagcaacggtgggc
aagctgaacgagcagctttctcagcaagtggcaagtcacaccatcacttcctaccgagga
gacagcagaagtcccacccagttgtccatttcatccaccaaccctctccgtagcatgcct
gctttgcatagagcccctgtttttcacccacccatccatcacagcctggagagaaaagac
gccagttacagtaatctctcaccgccgaccttaactccggtacagccggtgagcacaggc
agcaaaatacaagagcttcagaagcctccaactctagttcctgagctcaaagaaggttcc
agcacatacaagaagatttccgagaaaagcatccaggacggatggaaaaccaatgagaag
cagaaccacaacaaagtgtggatccctgaaaagaataacggcaagactcaatctgcgact
gcctctgttattgtccgcccatcatcgattgcaaagtatgatcccattccaatagcgcag
accctcccaaaggagagagttgtggataaacctggggtaaatcagattgattgcatcaaa
cccctggaatcccgagagactgtgaggaacatccagccaactgtcaactcagatagcgct
catgtcaatttggagaagagttctccggttccctccgttgccccggcggccagtataatg
tgcagcacgaaaactgatgtgaccacctctgcccctacgaccacaagtgtttccagcagc
agcgaatcagaggtgacctattccttgtccaactactctgtgtcagcttgtgctgtgata
gaatgtaacacctcaaaagctggaaacccaaccagcgcccaaaatccagagagccagctc
atcaacccggctccggttactccagtgagtggcaaggctataagtgcaattcaacccaac
gttgcctattccagttccactgacttcatccacctgaagaagcacaaggcggccttggcg
gcagctcagctcaaaagcacgaacgccagcgagacggagcccagtgctgtgaaaaatccc
aaattacctgcctccagttctccggacagcaacgtggcctgcagttcagccaatgcatca
agcactttaggcaacgggcctgttgcccagcctaactaccacacaaaactaaaaaaggct
tggcttacgagacactcggaagaagataaaaacattaacaaaccggaaagcacaggcagc
acattggtctcggaaatcatcaagccttgcactgtcaatctcatagcctcgacctccggc
gagcttcagaataacatcgacctccgagcgcaggatgataaatccccaaaagaggacagg
ctgaccaggaggagagtaaaaaggacttacgaatccggctcggagagcgaggactctgac
ggaagtgagagcaggtcggggcaaaggctcaagcgtcagcctaagccaacgtataaaaag
aagcaaaatgatatgcagagaaggacaaacacggacaaagaggaggaaatcaaacccaac
ggcattctcagccggattgcaaaggagaagagcaaactgaagctgcagagcaacaacagc
agtactggaattcctcgctcagtgttaaaagactggcggaaggtgaagaagctcaagcag
acgggcgaatccttcttacaggacgactcctgctgcgagatcggacccaacctccagaag
tgcagagagtgtcggctcattcgcaccaagaaaggggaagaatccacccactcacctgtg
ttttgcagattctattacttccgaaggttatcgttcagtaaaaacggagtggtgcgaata
gacggcttttcctctccggatcagtacgacgacgaatccctgagcctgtggtcacacgag
cattacgaagatgaggagctggacctggaaacagtcaaatacgtcttggcttatatcgga
gacaagttctgccagctggtcacctctgagaaagccgccatgtcctgggtgaaaaaggat
gctaaaatcgcgtggaagcgcgcagtgcgtggggtgcgggaaatgtgtgacgcctgcgag
gccaccttgttcaacatccactgggtctgccagaaatgtggctttgtggtgtgtctggat
tgttacaaagcaaaggaaatgaaaatatctcgagataaagaactgtacacttggatgaaa
tgcgtcaaggggcagccgcatgattacaagcacctcatgcccacccagattatccctagt
tcagttctgacagatctcctggaggccatgcatcatctccgagatcgatttgaaatccaa
tcgcactgtcactgtgtctccaagcagagcccacaggcccccaagtacccgccgatgaac
ggagtctcacaggtgctgcagaacgtcctcaaccacagtaacaagatatccctgtgtttg
cccgagtctccgaatcagaactcgccccaaaagcctgaaactaacggcaacgcaagcccg
gggagcgactccagctccgacagcaaactcacctcctccgagtcccattcctctctgcac
tggctggcagatttagccgaacagaagtccagggaagagaagaaagagaacaaggaatgt
ctcagtgggaaacatatcaaagaagagagagaccaagacatttctgaaactgtcaactgc
aagtcgtcctccccgccggctaacgagccaggctccaccttacgcgatttgctcacaacc
accgccgggaaactgcgcctcggctctatagacgctggtattgcctttgcaccagtctat
tcagccaccaatccatgcaatagagggggcaggtccatgccaaacatcttggatgacatc
atcgcctcagtcgtcgaaaacaaaattcccgccacgaggacccccaaacccgtcgttcag
ccggagccaaaggaagaagtgtcggaggtccccctggaggaggctgagaaggagaagcaa
gagatcccccattcctggatctgcgagaggcacatcctatggctcaaggaacacagacac
attcacaactggaagatgttccaagaatgctggaagcagggcaagacggtcgttgtgtct
gggacccacaaacggatgaatgccaatctttggaaattggaggcgatcggcaatgatttt
ggggatcatcaaggagacctccttaactgcaaagaaggaatcttgtccagcggcaacgtc
aaggaattctgggacggatttgaggatgtgtcaaagaggcagaaagtaaaaaatggggag
accgtcctcctgaaactgaaagaccagccttcgggggaggacttcaagaacatgatggcc
gcaaggcacgaagagttctttaaaatgctccctgtgccggaatactgtaatcctgacggg
aaattcaacctcgcctctcacatgccggcgttctttgtgcgtccggatttaggcccccgg
atgtgcagtgcatatggtgtaatagcgacaaaggatcaagacacgggcacaacgaacctt
catattgaagtgtcagacctggtcaatatcctcgtctatgttggtgctgcaaagggtctg
ggagtaacgtcgaaatctggggtgttaaagaagtttgaggaggaggaactggatgaagat
ttaaggaagaggctgaaggactccagcgaggtccccggctcattatggcacatatacgag
accagagacgctgacaaaatacgagagtttttgcacaaggcagcaaaagagcagtgtctg
gagattcttcctgaccacgacccaatcagagaccagaactggtaccttagcaagaaactc
cgccaaagccttctggaggattatggggtgaaaagttatacgcttgtccagttccttggg
gatgcaatcatattgcccgcaggagctatctatcaggtgcagaattttcacagctgcatc
caagtgactcaggactttgtgtctccggaacatctcgtccagtcgttccatttaacgcag
gaacttcgccattctaaggaagaaagcaattacgacgataaactgcaggttaagaatatc
ctataccattcagtgaaggaaatggtaagagcattgaagattcaggaggaagacatggaa
gagatggaggattgttaa
DBGET
integrated database retrieval system
