Xenopus laevis (African clawed frog): 108696253
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Entry
108696253 CDS
T01010
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
xla04121
]
108696253
Ubiquitin system [BR:
xla04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
108696253
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
108696253
NCBI-ProteinID:
XP_018080921
UniProt:
A0A1L8FK13
A0A974HBN0
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All DBs
Position
7L:42285948..42336334
Genome browser
AA seq
1830 aa
AA seq
DB search
MELMFAEWEDGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWRKQSAGPNSPTVKIKD
GLVNPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAFWSFPENEEDIRLYSCLANGS
ADEFQRGEQLFRMRAVKDPLQIGFHLSATVVPPQMLSPKGAYNVAVMFDRCRITSCSCTC
GAGAKWCSHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTVCGAPDPTAGPSASDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDTNAAPLLE
ILTDQCLNYEQITGWWYNVRTSASHSSASGHTGRSNGQSEVAAHACASMCDEMVVLWRLA
VLDPTISPQRRRDLCAQLRQWQLKVIETVKRGQHKKSLDKLFQGFKPAVEACYFNWEEAY
LIPGITYCSTDKKNSFCWVKAFQQRSCRLQCTDAVCDGGRGQGHENCHLFGDRSRPCSQE
MSVRPKELVGKRKVTSEVPQRVLRRLSAEGGEKTVYKSTVNKGKIAASKCLASKHSGKRR
MSSEDSSLEPDMAEMSLDDGSLALGAEACNTFSFIESPLSRRYQDNFEDEGGVYYSEGLE
PEVGGSGTISKAEADPIGESAAASGEEDLISADEGKSTKTEEVGENGAVGGGGAESKEAE
EGEVREKGEEEDDYQAYYLSHQEAAKNEDEKGDEGLDEEQDIFVGIKPLEQENRMEVLFA
CAEALYAHGYSNEACRLTVELAHDLLANPPDLKVEQPPTKGKKNKVSTSKQTWIASNTLS
KAAFLLTVLSERQEYHNLAFCIGMFALELQRPPASTKALEVKLAYQESEIVSLLKKIPLD
SNEMNTIRGRAKDLRDGTLCDYRPVLPLMLASFIFDVLCTPVVSPTGSRPPSRNRNNEMP
GDEELGFEAAVAALGMKTTVSEAEHPLLCEGTRREKGDLALALMITYKDDQSKLKKILDK
LLDRESQTHKPQTLSSFYSSSKPAAANQKSPSKHASQSSTSVLISGTPPAHQQQGVASAV
HGGLGENFPEKSTQDSSQKSTGEPSGEAHVYKQEGKVPSRLALGNRGGYNGRCWGSPVRQ
KKKHTGMASIDSSAPETTSDSSPTLSRRPLRGGWGATPWGRGQDSDSISSSSSDSLGSSS
SSGSRRASGGARAKTVEVGRYKGRRLESHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNS
STSIFTHPSSSVGHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAM
EIGSAALNILVECWDGHLTPPEVASLADRASRARDSNMVRAAAELALSCLPHAHALNPNE
IQRALVQCKEQDNMMLEKACMAVEDAAKGGGVYPEVLFEVAHQWYWLYEQMVGGTPVPRE
GATGCSTGGARSVPEAIRGLSDNRMIQDTSTVTVATAVTAATVVPVISVGSTIYQQHTAM
AHAHTQGLHPYTTLQTHIPSVCNPQYIGIPRQQLSQPALFPVPGALYTQAVHPAFIGAQY
PYTVTTPSLAATAVSFPGAPVPSMTQIAVHPYHAETGLSLSSNVAIGNVHTGTAFSAIQG
STMTTLSTQPASLVTPGFPAEDEQHSQPVSPQGLHYLHSAYRVGMLALEMLGRRAHNDHP
NNFSRSPPYTEDVKWLLGLAAKLGVNYVHQFCVGAAKGVLSPFVLQEIIMETLQRLNPAH
IHNHLRTPAFHQLVQRCQQSYMQYIHHRLIHLTPADYDDFVNAIRSARGAFCLTPLGAMQ
FNDILQNLKRNKQTKELWQRVSLEMATFSP
NT seq
5493 nt
NT seq
+upstream
nt +downstream
nt
atggaactcatgtttgcagagtgggaggatggcgagagattttcctttgaagactctgat
aggtttgaggaagactcgctctgttccttcatctctgaagcggaaagtctgtgccagaac
tggagaggatggaggaaacaatctgcagggcccaattcacccactgtcaaaattaaagat
gggttagtgaatcctttggtagagctgtctgctaaacaggtggcatttcacattccgttt
gaagtggtagagaaagtctatcccccagtgccggagcagctgcaattgcgcattgctttc
tggagctttcctgagaatgaggaggatatcaggctttactcatgcttggccaatggcagc
gccgatgagttccagagaggagagcaactctttcggatgagagcagttaaggatccccta
cagataggtttccacttgagtgccactgtagttcctccccaaatgttgtccccaaagggc
gcctacaatgttgctgtgatgtttgatcgttgccggatcacttcatgcagctgtacctgt
ggagctggtgccaagtggtgttcgcatgttgtggccctctgcctcttcaggatacacaat
gcgtcggcggtctgtctgcgtgctccagtctcagagtccttatctcggctgcagagagac
cagttacaaaaatttgctcagtatctcatcagtgagctgcctcaacagattcttcctact
gctcagcgtcttctagatgagctgttatcttcccagtcaacagcaattaatacagtgtgt
ggagctccagatccaacagcaggaccctcagcctcagaccagagcacatggtatctggat
gagtctactttgagtgacaatataaagaaaacactccataagttttgtggtccttctcca
gttgtcttcagtgatgtgaactccatgtacctctcttccacggagccaccagcagcagca
gaatgggcatgtctcttgcgtcctttgcgaggaagggaacctgagggcatctggaacctg
ctgtctatagtcagagagatgtttaagagacgagacaccaatgccgcccctttactagag
atccttactgaccaatgtttgaattatgagcagataacaggctggtggtacaatgtgcgc
acatctgcatctcacagcagtgccagtgggcacacaggtcgtagtaatgggcaatcagaa
gttgctgctcatgcatgtgctagtatgtgtgatgagatggtagtactctggagattggca
gtgttagatcctacaattagcccacaaagacgcagggatctttgtgctcaactccgtcaa
tggcagctgaaagttattgaaactgttaagagagggcagcacaagaagtctctagacaaa
ctcttccagggcttcaaaccagctgtggaagcatgttacttcaactgggaagaagcttat
cttatccctggcatcacctactgcagcacagacaagaagaactccttctgctgggtcaag
gcatttcagcagagaagctgccggcttcagtgtactgatgcagtatgtgatggtggacga
gggcagggacatgaaaattgtcacctctttggagacagatcacgcccatgctcacaggag
atgtctgtgcgtcccaaagaacttgtaggtaaaagaaaggtgacctctgaagttccacag
agggtcttgcgaagactttctgcagaaggaggagagaaaactgtgtataaatccacagtg
aacaaaggaaaaattgcagcaagcaagtgtcttgccagcaagcatagtggcaaacgtcga
atgagtagcgaagacagctcactggagccagatatggctgaaatgagtctggatgacggc
agcttggctcttggggctgaagcttgtaacacttttagctttatagaatctcctcttagt
aggagataccaggacaactttgaagatgaaggtggagtctattattctgaagggcttgaa
ccagaagttggtggaagtggaacaatatcaaaggctgaagctgatccaattggggaatct
gctgctgctagtggagaagaagatctgatatctgcagatgaggggaaaagcacaaaaact
gaagaggtgggtgagaatggagctgtcggagggggtggagcagaaagcaaagaagctgaa
gagggggaagtgagagagaagggagaggaagaagacgactaccaagcatactatctgagt
catcaagaagcagcaaagaatgaagatgaaaaaggagatgaaggactggatgaagaacaa
gacatatttgtgggaataaaacctctggagcaagaaaatcgaatggaggttctctttgcc
tgtgcagaggcattgtatgctcatggatatagcaacgaagcttgtcgacttacagtagag
ctggcgcatgacttacttgctaatcctccagatctgaaagtagagcaaccccctaccaag
ggcaaaaagaacaaggtctcaaccagcaaacaaacatggatagcaagcaacaccttgtcc
aaagcagctttcttattaacagtgctgagtgagcgtcaagagtaccacaatcttgcattt
tgcattggcatgtttgccttggaacttcagagacctccagcttcaaccaaagcattagag
gtaaaattggcataccaagagtcagaaattgtgtctcttctaaaaaagatcccattggac
agcaatgaaatgaacactatccgtggccgagcaaaggatttacgagatggcactttgtgt
gattacagacctgtgctccctcttatgcttgctagttttatttttgatgtgttgtgcacc
ccagtggtttccccaacaggttcccgtcctcctagtcgtaatcgcaacaatgagatgcct
ggagacgaagagcttggctttgaggcagctgtagctgcattaggaatgaaaacaacagtc
agtgaagcggaacatcctttactttgtgaaggcacaaggcgagagaagggagatttggca
cttgccttgatgattacctacaaggatgatcagtcaaaattaaaaaagattttggacaag
ctgttagaccgagaaagtcagactcataaaccacagaccctaagctccttctactcttcc
agtaaacctgcagcagccaatcaaaaatccccatccaaacatgcatctcagtctagtaca
tccgtccttatatcaggtaccccaccagctcatcagcagcaaggagtagccagtgcagtc
catggaggcctgggagaaaattttccagagaaaagcacacaggatagctcccaaaaatca
actggagagccctcaggggaagcacatgtgtataagcaggaagggaaagtcccaagccgc
ctggctttggggaaccgaggaggttacaatgggagatgctggggttcaccagtgcgtcaa
aagaagaagcatacaggcatggctagtattgatagcagtgccccagaaaccacatccgac
agttccccaaccctgagccgccgtcctttgcgtggtggttggggagctacaccctgggga
agaggacaagatagcgacagtatcagcagctcctccagcgactctttgggatcatcatct
tccagtggcagcaggagagccagtgggggagctcgagccaagactgttgaagtgggccga
tacaagggccgtcgcctggaaagccatgcaccccatgttcctaaccagccttctgaagcc
gctgcccacttctactttgagctggctaagactgtcctcattaaagctggaggaaacagc
agcacctccatcttcacccatccatcatctagtgtaggacatcaagggccccaccgcaac
ctgcacctctgtgcctttgaaataggcctctatgctttggggctgcacaattttgtatct
ccaaactggctgtctaggacttactcctcccatgtctcctggataacagggcaagccatg
gagattggcagtgcagcactgaacattcttgtagagtgttgggatgggcatctcacccca
cctgaggtggcatctcttgcagacagagcatccagagccagggattccaatatggttcgt
gcagcagctgaattggctctcagctgtcttccccatgcacacgcattgaacccaaatgag
atccagagagctctggtccagtgtaaggagcaggataacatgatgttggaaaaggcctgt
atggctgtagaagatgctgccaagggaggaggcgtttatcctgaggtcttgtttgaagtg
gcccatcagtggtactggctgtatgagcagatggttggtgggactcccgtgccgagagag
ggggctactggctgcagtactggaggggcacggtcggtgccagaagcaattcgtggactt
tcagacaacaggatgatccaggatacctccactgtgactgtcgcaactgctgtgactgca
gcgactgttgtgccagtgatatcagtaggctctacaatatatcagcaacatactgcaatg
gctcatgcacatacacagggtctccacccttacaccactcttcaaacacatataccatct
gtctgtaacccacagtatattggtatccctcgccagcaactctcacagccagctctcttt
cctgtcccaggagcactgtacacccaggctgttcacccagcattcatcggggcccagtat
ccctacactgtaacaaccccatctctggcagcgacagcagtatcctttcctggagcaccg
gtcccttcaatgacccagattgctgtgcatccataccatgctgagacaggactgtccctc
tcttccaatgtagcaatagggaatgttcatactggaacagcattttcagccatccaaggg
tcaaccatgacgacactaagcacccagcctgcatctctagtgacgccaggcttccctgca
gaagatgaacagcacagccagcctgtaagcccccagggtttgcactacctccattcagcc
tatcgtgtagggatgctggctctagagatgctgggcaggagagcccacaacgaccaccct
aacaacttctccagaagccctccatacacagaagatgtgaaatggttactaggtttagct
gccaagttaggtgtcaactacgtgcatcagttctgtgttggggcggccaagggggtgctg
agtccatttgttctacaggagatcatcatggagactctacagagactgaaccctgcccac
atccataatcacctgcgcacccccgcttttcatcagttggtacagcgctgccagcagtct
tacatgcagtacatccaccacagactcatccacctcaccccggccgactacgatgatttc
gtaaacgccatccgcagcgccagaggtgcattctgtctcacgcctttaggagcaatgcag
ttcaacgacatcctacagaatctgaaacgtaacaagcagaccaaggagctgtggcagagg
gtttccctagaaatggccaccttttctccttga
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integrated database retrieval system
