Xenopus laevis (African clawed frog): 108697367
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Entry
108697367 CDS
T01010
Symbol
jmjd1c.S
Name
(RefSeq) probable JmjC domain-containing histone demethylation protein 2C isoform X1
KO
K11449
jumonji domain-containing protein 1C [EC:1.14.11.-]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108697367 (jmjd1c.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
108697367 (jmjd1c.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tudor_KDM3B
PWWP_KDM3B
DUF7030
JmjC
zf-C5HC2
FYVE
C1_2
Motif
Other DBs
NCBI-GeneID:
108697367
NCBI-ProteinID:
XP_018082815
Xenbase:
XB-GENE-17336201
UniProt:
A0A8J0TF13
LinkDB
All DBs
Position
7S:complement(9572693..9801457)
Genome browser
AA seq
2509 aa
AA seq
DB search
MALGARPELVGKRFVCSVLGGGEEPPELGEIGQIGRWGWRAGVIRAVSHRDNDNPELTVY
VEFDDLEWDKREWMKVYEDFTAFFVEYQLVWAKRKDPGQSQGSKGKHIQWPALAFKPLVG
KGVYNSITAIEFLVERHLEFVSEDSAFQLYQDEVDSLNPVLRDNPQLHEEVKAWVKEHKV
QEIFMQGPYSLNGYRVRVYRQDSATQWFTGIITHHDLFTRNMIVMNDQVLEPQNVDPSMV
QMTFLDDVVYSLLKGENIGITSRRRSRSNQNSNTIHGHYTRAQANSPRPAMNSQSSTSKQ
GQQHRNARLNKRKGSDSSMPDEDRVKEERYDGTGRSENLKRNKHFHSKRRKPEEDEKKFI
LKRLRADNISDFSESSDSENSNKRTIDSSSEQNSENELKIKNTSKINGDEGKSQSSDGAE
EQTLIDRHSPWDEIQDDKKEIESQLQEDKPHFLLSEQTALYEQNPNNPHVLNSVAEKNNT
TELLQVEPLSGKPPTPKNAIVLNNENNANEAAQESGTSTFGSQPVPKMELQSTELKPSYA
GISFSDSKKQDPERVWSEVNSKGDLAHPGVLKNSHLAKETHEREKIQHGSVIGSTSLTDE
QKRLQKQTLDAMKAKPHVAEVSSKIKYNASPDVLKSRSVHSPDPVKHKVNYHNSPMAGIV
RSSSKLDCDLHRSSFHPVAARVSAIESTKSPLIIDKNEHFTVYRDPALVGPETAANHLSS
YLHQHNFPLHSPAHRTCLPPNSHHPALTGNPHLLTSSSNQASIAAINTHSLGSASHHPVH
HPHLLPAVLPGMNPGSLLGGHPQLETAHASSLSHLALAHQQQQQMLQHQSPHLLSQAHPS
ASYNQLGLYPIIWQYPNGSHAYSGLGLPSSKWVHTENHVSAEASMRRNTASPWLHQPTPV
TSADSLLIGHLPVRPSSADAHRPIKLGVHSSPPLSKPAAEHHKEEIDKKPFMDPMRSIAT
VKSEHEHGRTHAGKESHLHRHYMEPVLSHSKLQRISQDPVERPIKYKEEHRRILQENTEA
SPFPLKAKAHENEHDGYRVAPIVSSGTKIHVVKQENNVDRHINELYKLKNSVSQSLPQSN
YFTTLSNSVVNDPPRSFASKEVVNLYPEKQNSTPCSANSYMSSLSKPPPLIKHQPEEVTT
VKLNEQLSQQVASHTITSYRGDSRSPTQLSISSTNALRSMPALHRAPVFHPPIHHSLERK
DASYSNLSPPTLTPVQPVNTGSKIQELQKPPTLVPEPKEGSSTYKKEKSIHDGWKVNEKQ
NHSKGVWMPEKNNFKTQAATASVIVRPSSSAKYDPIPIVQPLSKERVGDKPLSGLNQTDC
IKPLESRETVRITQPTVSLEKSSPVPSHTASSVGPAPSIMCSTKTDVTTSAPTTTSVSSS
SGSEVTYSLSNYSVSACAVIESNTSKAGNPTSTQTPESQVINPAPVTPVSGKATSAIQPN
AAYSTSTDFIHLKKHKAALAAAQQKSTNASETEPSAVKNPKLPACSSPDSNVACSSANAS
STLGNGPVVQPNYHTKLKKAWLTRHSEEDKNINKPESTGSTAVSELIKPCTVNLINSTSE
ELQNNIDLRVQDDQSPKEDRLTRRRAKRTYESCSESEDSDGSETRSGQRLKRQPKPTYKK
KQNDMQRRKGDTDKEEEIKPNGILSRLAKEKSKLKLQSNSSSNTGIPRSVLKDWRKVKKL
KQTGESFLQDDSCCEIGPNLQKCRECRLIRTKKGEESTHSPVFCRFYFFRRLSFSKNGVV
RIDGFSSPDQYDDESLSLWSHEHYEDEELDLETIKYILAYIGDKFCQLVTSEKAAMSWVK
KDAKIAWKRAVRGVREMCDACEATLFNIHWVCQKCGFVVCLDCYKAKERKISRDKELYTW
MKCVKGQPHDYKHLMPTQIIPSSVLTDLMEAMHHLRERFGIKSHCHCVGKQSPQTPKYPA
MNGVSQVLQNVLNHSNKISLCLPESPHQSSPQKPETNGNASPGSDSSSDSKLTSSESHSS
LHWLADLAEQKSREEKKENKECPSGKRIKEERDQDVSETVKGKSSTPTTQNNEPGSTLRD
LLTTTAGKLLLGSTDAAVAFAPVYSAANPCNRGGRSMPNILDDIIASVVENKIPATRTPK
PIVQSEPKEEIAEVPLVEAVKENQEIPHSWICERHILWLKDHKHVHNWKMFQECWKQGKT
VVVSGTHIRMNANLWKLEAISSDFGDHPGDLLNCKEGVVQSGNVKEFWDGFEDVSKRQKV
KNGETVLLKLKDQPSGEDFKNMMLARYEEFFKMLPVPEYCNPDGKLNLASHMPSFFVRPD
LGPRMCSAYGVIATKDQDTGTTNLHIEVSDLINILVYVGAAKGLGVTSKSGVLKKFEEEE
MDEHLRKRLKDSNEVPGSLWHIYETRDADKIREFLHKAAKEQCLEILPDHDPIRDQNWYL
SKKLRQSLLEDYGVKSHSLVQFLGDAIILPAGAIYQVQNFHSCIQVTQDFVSPEHLVQSF
HLTQELRHSKEEINYDDKLQVKNILYHSVKEMVRALKIQEEDMEELEDC
NT seq
7530 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgggagcgcgaccggagctcgtagggaagcgcttcgtctgttcggtcctcgga
ggaggagaggagccgccggaactcggggagatcggacagatcggtcgctggggctggaga
gccggagttatccgagcggtgtctcacagggacaacgacaacccagaactgacggtgtat
gtggaatttgatgacctggaatgggataaacgagagtggatgaaagtatatgaagatttt
acagccttttttgtggagtaccagctggtctgggctaagcgaaaagaccccggccagtct
cagggatcaaagggcaagcacatccagtggcctgcattggcatttaagcccctggttgga
aaaggtgtatataattccattactgcaatagaattcttagtagagagacacctggagttt
gtcagtgaagatagtgcctttcagctctatcaggatgaagtagatagtctcaacccagtt
ctcagggataaccctcagcttcacgaggaggtgaaagcctgggtaaaagaacataaggtt
caggagatttttatgcaaggtccatattccttaaacggctatcgggtgagagtttacaga
caggactcggccacccagtggttcactggtataatcactcatcatgatctcttcacccgc
aatatgattgttatgaatgaccaggtactagagccacagaatgttgacccttctatggtt
cagatgacctttctagatgatgttgtttactctttgttgaaaggtgaaaatattggtatc
acatctcgccggaggtctcgctccaatcagaacagcaacacaatccatggtcattacaca
cgggcacaagccaacagtcccaggccggcgatgaactctcagagctccacatccaagcaa
ggtcagcagcacagaaatgcccgtttaaacaaaaggaaaggatcagacagcagcatgccc
gacgaagatcgagtgaaagaagagagatacgacggcacaggtagatcagaaaatctgaag
aggaacaaacatttccacagcaaaaggaggaaacccgaagaggacgaaaagaaattcatt
ttgaaaaggctgcgcgcggacaatatttcagacttctcggagagcagcgactccgaaaat
tcaaataaaaggacaatagattcttcgtccgagcaaaattccgagaacgagttgaaaatc
aagaacacttcaaagataaacggagacgagggaaaatcccaaagtagcgacggggctgag
gaacagacactaatagatagacattctccctgggatgagatacaggacgataaaaaggaa
atagagtctcagctgcaggaagataaacctcactttctcctatcggaacagacagcactt
tatgagcagaatcccaacaacccacatgttctaaatagcgtagcggagaagaacaacact
acggaattgttacaggtcgagccactcagcggcaagcctccaacgccaaaaaatgccatt
gtcttaaataacgaaaacaatgccaacgaggctgcccaagaaagcggcaccagcacgttt
ggctcacagcctgttcccaaaatggaattacaaagcaccgaattaaagccttcgtacgca
ggtatcagtttttctgattctaagaagcaggatccggagcgcgtgtggagcgaggtgaac
agcaagggggacttggcgcatccgggcgtgttaaagaattcccatttggccaaggaaacc
cacgagagagagaaaatccagcacggctctgtcatcggcagcacttccctaacagacgag
cagaagaggcttcagaagcaaaccctggacgcaatgaaggccaaacctcacgtcgcagag
gtttctagtaaaatcaagtacaacgcctctccggatgtgttaaagtcgcggtccgtccac
tccccagaccctgtgaagcacaaagtgaattaccataacagtccgatggctgggattgta
aggtcctccagcaagttggattgcgaccttcacagatccagttttcatccggtggcggcc
agagtgagcgccatcgagtctacaaaaagtcctcttatcatagacaaaaatgaacacttt
accgtttacagggacccagcacttgttggaccagagactgcagctaatcacttatcttct
tatttgcaccagcataactttcctcttcattctccagctcatcgaacgtgtttacctcca
aacagccaccacccagcgttaacaggaaaccctcatctactcacatcctcctcaaaccaa
gcatctatagctgctattaatactcactcgcttggcagtgcatcccatcatcctgttcat
catcctcatttactacctgcggtgttgcctggcatgaaccccgggtcattactaggtggc
cacccacagctagagactgcacacgccagcagccttagtcacttagcattggcacatcaa
cagcagcagcaaatgttacagcatcagtcaccgcaccttctcagccaagctcatccgtcg
gcttcttacaaccagctgggactctatccaatcatctggcagtatccaaatggaagccat
gcttattccggtcttggcctgccgtcgtcgaagtgggttcatactgagaatcatgtcagt
gctgaggcttccatgagacggaacactgccagtccctggctgcaccaacctacacctgtg
acttcagccgacagtctcctgattggtcacctgccggtgcggccctccagtgcagacgca
caccgaccaatcaaacttggtgtgcactcgagcccgcctttgtccaaaccagcggccgag
caccacaaggaagagatcgacaagaaacctttcatggatcccatgcgttcaattgcaacg
gtgaagtctgaacatgaacacggccggactcacgcaggcaaagagagccatttacataga
cattatatggaacctgtcctgagccactccaagttgcagaggatctcgcaggatcccgta
gagaggccgattaaatacaaggaggaacacaggcgaatacttcaggaaaatacagaagca
tctccttttccgctgaaggcgaaagcacacgagaacgaacatgatggttacagagtcgcg
cccatcgtctcttccggcactaaaatccatgtggtgaaacaggagaacaatgttgatcgc
catattaatgaactgtataaactgaagaactcggtctcacagagtttaccgcagagcaac
tattttaccaccttatcaaacagtgtggtcaacgatccgccgcggtcgtttgcgtcaaag
gaagtggtgaacttgtacccggaaaagcagaattctaccccgtgctctgccaactcgtac
atgtcgtctctctccaaaccaccgccgcttatcaagcaccagcccgaggaagtgacgacg
gttaagcttaacgagcagctttctcagcaagtggcaagtcacaccatcacttcctaccga
ggagacagcagaagtcccacccagttgtccatttcatccaccaacgctctccgtagcatg
cctgctttgcatagagcccctgtttttcacccacccatccatcacagcctggagagaaag
gacgccagctacagtaatctctcgccgccgaccttaactccggtgcagccggtaaacaca
ggcagcaaaatacaagagcttcagaagcctccaacgctagttcctgagcccaaagaaggt
tccagcacatacaagaaagagaaaagcatccatgatggttggaaagtgaatgagaagcag
aaccacagcaaaggagtgtggatgccggagaagaataacttcaagacccaggctgcgact
gcctctgtcattgtccgcccatcgtcaagcgcaaagtacgatcccattccaatagtgcag
cccctctcaaaggagagagttggggataaacccttatctgggttgaatcagactgattgc
atcaaacccctggaatcccgagagactgtgaggatcacccaaccaactgtcagtttggag
aagagttctccggttccctcgcacaccgccagctccgtcggcccagcgcccagtattatg
tgcagcacgaaaactgatgtgaccacctctgctcccacaacgacaagtgtctccagcagc
agcggatcggaggtgacctattccttgtccaactactctgtgtcagcttgtgccgtgata
gaatctaacacctcaaaagctggaaacccaaccagcacccaaactccagagagccaggtc
atcaacccggctccggttactccagtgagtggcaaggctacaagtgcaattcaacccaac
gctgcctattctacttccactgacttcatccacctgaaaaagcacaaggcggccttggcg
gcagctcagcagaagagcacgaacgccagcgagacggagcccagtgctgtgaaaaatccc
aaattacctgcctgcagttctccggacagcaacgtggcctgcagttcagccaatgcatca
agcactttaggcaacgggcctgttgtccagcctaactaccacacaaaactaaaaaaagct
tggcttacgaggcattcagaagaagataaaaacattaacaagccagagagcacaggcagc
actgcagtctcagaattaatcaagccttgcactgtcaatctcattaactcaacctccgag
gagcttcagaataacatcgacctccgagtgcaggatgaccagtctcccaaagaagatagg
ctgaccaggaggagagcaaaaaggacttacgaatcctgctccgagagcgaggactccgac
gggagtgagaccaggtccgggcaaaggctcaagcgccagcctaagcccacgtataaaaag
aagcaaaatgatatgcagagacggaaaggcgacacggacaaagaggaggaaatcaaaccc
aatggaattctcagccggcttgcaaaggagaagagcaaactgaagctgcagagcaacagc
agcagcaatactggaattcctcgctcagtgttaaaagactggcgtaaggtgaagaagctg
aagcagacgggcgaatccttcttacaggacgactcctgctgcgagatcggacccaacctc
cagaagtgcagagagtgccggctcattcgcaccaaaaaaggagaggaatccacccactcg
cccgtgttttgccgattctatttcttccgaaggttatcgttcagtaaaaacggagtggtg
cggatagatggcttttcctccccggatcagtacgatgatgaatccctgagtctgtggtca
cacgagcattatgaagacgaggagctggacctggaaaccatcaaatatatcttggcttat
ataggagataagttctgccagctggtcacctctgagaaagccgccatgtcctgggtgaag
aaggatgctaaaatcgcgtggaagcgggccgtgcgcggggtgcgggaaatgtgtgacgcc
tgtgaggccactttgttcaacatccactgggtctgccagaaatgcggctttgtggtgtgt
ctggattgttacaaggccaaggaaaggaaaatatctagagataaagagctgtacacgtgg
atgaaatgtgtgaaggggcagccgcatgattacaagcacctcatgcccacgcagattatc
cccagctcagttctgacggatctcatggaggccatgcaccatctcagagaaagatttggg
atcaagtcccactgtcactgtgtcggcaagcaaagcccacagacacccaagtacccggcc
atgaatggagtctcacaggtgttgcagaacgtcctcaaccacagcaataagatatccctg
tgtttgcccgagtctccgcaccagagctcaccccaaaagcccgaaaccaatggcaacgca
agcccggggagcgactccagctccgacagcaagctcacctcctccgagtcccattcctct
ctgcactggctcgcagacttggcggaacagaagtccagggaagaaaagaaagaaaacaag
gaatgtcccagtgggaaacgtatcaaagaagagagagaccaagacgtttctgaaactgtc
aagggcaagtcgtccaccccgacgactcagaataacgagccaggctccaccttacgcgac
ttgctcacaaccaccgctgggaagctgctcctcggctctacggacgctgccgttgccttt
gcaccagtctattcggctgcaaatccatgcaatagagggggcaggtccatgcccaacatc
ttggatgacatcatcgcctcggtcgtcgaaaacaaaattcccgccactcggacccccaaa
cccatcgttcagtctgagccaaaggaagaaatcgcggaggtccccctggtggaggctgtg
aaggagaaccaggagatcccccattcctggatctgtgagaggcacatcctgtggctaaag
gaccacaaacacgtccacaactggaaaatgttccaagaatgctggaaacagggcaagaca
gtcgttgtgtctgggacccacatacggatgaatgccaatctatggaaattggaggcaatc
agcagtgattttggggatcatccaggagacctccttaactgcaaagaaggcgttgtgcag
agtggcaacgtcaaggaattctgggatggatttgaggatgtttctaagaggcaaaaagta
aagaacggggagaccgtccttctgaaactgaaagaccagccttcgggggaagacttcaag
aacatgatgctcgcgaggtatgaagagttctttaaaatgctccctgtgccggaatactgc
aaccccgacgggaagttgaacctcgcctctcacatgccctcgttttttgtgcggccggat
ttaggcccccggatgtgcagcgcatatggtgtaatagcaacgaaggaccaagacacgggc
acgacgaatcttcacattgaagtgtcagacctgatcaatatcctcgtctatgtcggtgct
gcaaagggtctcggagtaacgtccaaatccggagtcttgaagaagtttgaggaggaagaa
atggatgaacatttaaggaagaggctgaaggactccaatgaggtccctggatcactatgg
cacatatacgagaccagagacgctgacaaaatacgagagtttttgcacaaggcagcaaaa
gagcagtgtctggagatcctacctgatcacgacccaatcagagaccagaactggtacctt
agcaagaaactccgccaaagccttctggaggattatggggttaaaagccattcgcttgtc
cagttccttggggatgcaatcatattgcccgctggagctatctatcaggtgcagaatttt
cacagctgcatccaagtgactcaggactttgtgtctccggaacatctcgttcagtcgttc
catttaacgcaggaacttcggcattcgaaggaagaaatcaattacgacgataaattgcag
gttaagaatatcctataccattcagtgaaggaaatggtaagagcattgaagattcaggag
gaagacatggaagagttggaggattgctga
DBGET
integrated database retrieval system
