KEGG   Xenopus laevis (African clawed frog): 108697414
Entry
108697414         CDS       T01010                                 
Symbol
taf5.S
Name
(RefSeq) transcription initiation factor TFIID subunit 5
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    108697414 (taf5.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    108697414 (taf5.S)
   03036 Chromosome and associated proteins [BR:xla03036]
    108697414 (taf5.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     108697414 (taf5.S)
   Coactivators
    SAGA/TFTC/STAGA complex
     108697414 (taf5.S)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     108697414 (taf5.S)
    STAGA complex
     108697414 (taf5.S)
    TFTC complex
     108697414 (taf5.S)
    SAGA complex
     108697414 (taf5.S)
    SLIK complex
     108697414 (taf5.S)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz TFIID_NTD2 WD40_WDHD1_1st Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WDR55 WD40_MABP1-WDR62_1st NBCH_WD40 Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_IFT122_1st ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_DCAF4 Beta-prop_SPT8 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_DCAF12 Beta-prop_HPS5 Beta-prop_WDR19_1st Beta-prop_VPS8 Beta-prop_WDR35_TULP_N WD_LRWD1 PROPPIN LisH_TPL
Other DBs
NCBI-GeneID: 108697414
NCBI-ProteinID: XP_018082920
Xenbase: XB-GENE-17343298
UniProt: A0A974HA58 A0A1L8FEI9
LinkDB
Position
7S:complement(18143130..18159119)
AA seq 779 aa
MAAVPDEASVVVKSELEAQDEFKADKSGCVDGNVQALGNGAPASPSSPQAAPPVPPGVAA
PPASAAPAPVSDASDRQTLLAVLQYLNKRKLKDSAHILLRESGLFDSEELLALTSLSPEL
AGEGDGAETNLLSRVSCAAGTGADVSVSSAGAASNCASSASAGKATLNNSPQDQPDISAV
LSAYTQQGEPALYEEYYSNLKRFIESVLDCHRAELSQLFYPLFVHMYLELVYNQHEHKAK
LFFEKFHGDQECYYEHDLRVLASLTKKEHMMGNETILDFRTSKFVLRISRDSYQLLKRHL
QERQNNQIWSIVQEHLYIDIFDGMPRSKQQVDAMVGSLSGEAKREANKAKMFFGLLKEPE
IEVPLDDEDEEVENEEGKPKKKKPKKDSSGSKSKKQDPNAPPQNRIPLPELKDSDKLDKI
IIMKEAAKRVTLSSDSLPSICFYSFLNAYQGLTAVDITDDSSLIAGGFADSTVRVWSLTP
KKLRSVKSSSDLSLIDKEADDVLERIMDEKSSSEMKILYGHSGPVYATSFSPDRNNLLSS
SEDGTIRLWSLQTFTCLVAYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDHYQPLR
IFAGHLADVICTRFHPNSNYVATGSTDRTVRVWDVLNGNCVRIFSGHKGPVHALAFNPNG
KFLSSGATDGRVLLWDVGHGLMVGELKGHTNTIYALRFSRDGDILSSGSMDNTVRLWDAV
KTFEDLDTDDFATSAGHINFHENSQDLLLGTFITKSTPVVHLHFTRRNLLLAAGAYTPQ
NT seq 2340 nt   +upstreamnt  +downstreamnt
atggccgcggtgccagacgaggcgagtgtggtggtgaagtcggagcttgaggcgcaggat
gagtttaaggctgacaagtcggggtgcgtggatgggaatgtacaggcgctgggaaatggc
gctcccgcgagtccctctagtccccaagctgctcctcctgttccaccgggggttgcggct
ccgccagcatcagctgctccagcgccagtgtcggatgccagtgaccgccaaacgctgctg
gccgtgctacagtacctgaacaagcgcaaactcaaggactccgcccatattctcctgagg
gagagcggactgttcgactctgaggaacttctcgccttaacttcgctcagccccgagctc
gccggggaaggggacggagcagagacgaacttgctgagccgagtgagttgtgcggcggga
actggagcggatgtatccgtgtcttctgccggggcggcttctaactgcgcttcttctgcc
tccgccgggaaagctactttgaataatagccctcaagaccaaccagacatcagcgcagtt
ttgtctgcttacacccaacaaggagagccggccctctacgaggagtactacagtaatctg
aagcgttttattgagtctgtgctagactgccatcgggcagaactatcccagttgttctac
ccactctttgttcacatgtacctggaactagtttacaatcagcatgaacacaaggcaaaa
ttattttttgaaaaatttcatggtgatcaggaatgctattatgaacatgatctgcgagtt
ttagccagcctcaccaaaaaggagcacatgatgggcaacgagaccatccttgactttcgc
accagcaagtttgtgttgcgaatttctcgtgactcctatcagttgctgaagaggcattta
caggagcggcagaacaaccagatctggagtatcgttcaggagcacttgtacatcgatatc
ttcgatgggatgccacgcagcaagcagcaggttgacgctatggtgggcagtctgtctggg
gaagcgaaacgagaagcaaacaaagcaaagatgttctttggccttctgaaagagccagaa
attgaagtccctttggacgacgaagatgaagaagtggaaaatgaagaagggaaaccaaaa
aagaaaaagcctaaaaaagatagcagtggatctaaaagcaaaaagcaggatcctaatgct
ccaccacaaaacaggattccacttccagaactaaaggactccgacaaacttgataaaatt
atcatcatgaaagaagccgccaaacgagtgacactcagctcagatagtctgccctccatt
tgtttctactcctttcttaatgcctatcagggtctgacggcagtggatataactgatgat
tccagccttatagcaggaggatttgcagactccacagttcgtgtttggagccttacccct
aaaaagctgcggagtgtcaaatcttcgtccgatctgagcctcatagacaaagaggcggat
gatgttttagaaagaataatggatgaaaagtcttcaagcgagatgaagattttatatggt
cacagtgggcctgtttacgccaccagcttcagcccagacaggaataacttgttatcgagt
tctgaagatggcactatccggttatggagtcttcagacatttacatgcttggtggcttac
aaagggcacaattacccagtttgggacacacagttctctccttatgggtactactttgta
tcaggaggccacgacagagttgcacgtttatgggctacagatcattatcagcccttaaga
atatttgctggccatcttgccgacgtaatatgcacgagatttcacccaaactccaactat
gttgccactggctcaacagacagaactgtcagagtgtgggacgtgctaaacgggaactgt
gtacggattttctccggacataagggaccagtccatgcattggcattcaacccaaatgga
aagtttctttcatcaggagcgacagatggcagagttctcctgtgggacgtcggccatggt
ttgatggttggagagttaaagggtcacacaaacacaatatatgcacttaggtttagcaga
gacggggacattttatcatcaggttcaatggacaatacagttcggttgtgggatgcagta
aaaacttttgaagacttagacaccgatgactttgcaacttcagcgggccatataaacttc
catgaaaactcacaagacttactcctgggtacttttataaccaaatcaacccctgtcgta
catctccatttcacaaggcgaaacttgctccttgctgcaggagcttacaccccacagtga

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