Xenopus laevis (African clawed frog): 108697843
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Entry
108697843 CDS
T01010
Symbol
htt.L
Name
(RefSeq) huntingtin isoform X8
KO
K04533
huntingtin
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108697843 (htt.L)
04131 Membrane trafficking [BR:
xla04131
]
108697843 (htt.L)
03029 Mitochondrial biogenesis [BR:
xla03029
]
108697843 (htt.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108697843 (htt.L)
Membrane trafficking [BR:
xla04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108697843 (htt.L)
Mitochondrial biogenesis [BR:
xla03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
108697843 (htt.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
108697843
NCBI-ProteinID:
XP_018083778
Xenbase:
XB-GENE-6486972
UniProt:
A0A8J0TG93
LinkDB
All DBs
Position
1L:23513202..23645660
Genome browser
AA seq
3111 aa
AA seq
DB search
MATMEKLMRAFESLKSFQQQQGPVVPEEPAPKAKKDPSTNKKDRVNHCLTICENIVAQSL
RNSPEFQKLLGIAMELFLLCSDDAESDVRMVADECLNKVVKALMDSNLPRLQLELYKEIK
KNGAPRSLRAALWRFAELAHLVRPQKCRPYLVNLLPCLTRISKRHEESVQETLAAAIPKI
MAAFGNFANDNEIKVLLKAFVANLKSSSPTMRRTAAGSAVSICLHSRRTQYFYTWLLNVL
LGLLVPVEDEHPTLLILGVLLTLRYLIPLLQQQVKDTSLKGSFGVTQKEADISPSAEQLI
QIYELTLHYTQHRDHNVVTGSLELLQQIFRTTPLDLLHVLTTPGSIEQVSVCRDEPYSRS
RSGSIVELIAGGSSTCSPVLARKQKGKIHLGEEEGLDDDLEGKSDASATPFAATKNEVTS
DVTATSSAGANLDAPSHDIITQQPRSQHTLQSDSVDISTSDLTNTVTEGDEEDILSHSSS
QISTVQSDPNMELNEGTTQASSPVSDSSQTTTEGPDSAVTPSDSSEIVLDAADENQYSGM
QIGQLQDEEDEGAILHQEEAGETFGKSSLGLNQTHLLKTMGHSRQSSDSSVERFVPKEES
VDPGDLENKPSRIKGDIGHYMDKDAAPLIHCVRLLSASFLLTGQKNVLVPDKDVRVSVKA
LAVSCVGAAVALYPEALFSKLYKLSPETNEPQEIQYVSDILDYINHGDPQVRGATAILSG
TIVFSVLTKAHFEAETWISKVKANTGNTFSVPDCIPLLQKSLKDESSVTCKLACMAVRHC
IMTLCCSSYSELGLQLIIDLLTLKNSSYWLVRTELLETLAEIDFRLVNFMEARTENLHRG
VHYYTGLLHLQDRVLNNVIISLLGDEDARVRRVAAASLVRLVPKFFYNCDQVQADPVVAA
ARDQSSIYLKLLMHETQPPSHFAVSTITRIYRGYNIQQSPTDVSMENNLSKVITAVSHAL
TTSTTRALTFGCCEALCLLSVTFPVCTWSVGWHCGYVTSTNAQTTRIQVYKNRGRSFSIS
QQSPSEEPRKSCTAGMSSMILSLISSAWFPLDLSAHQDALVLAGNLLAATAPKSLKNPWT
SEEEISQAANKQEEPWPALGDRTVVGMVEQLFIHLLKAINICAHVIDDITPGPVVKVQHY
ATLPSLTNPPSLSPIRRKGKERDTAEQTAVPLSPKKSGEGMPASRQTEASGTAQTSKSLG
SFYHLPSYLKLYDVLKATYANYKVTLDLQNNNEKFGGFLRSALDVLSQILELATLTDIGK
CVEEILGYLKSCFSREPVMATVCVQQLLKTLFGTNLASQFEALSLNPSKSQGKAQRLGSS
NLRPGLYHYCFMAPYTHFTQALADASLRNMVQADQEQDTSGWFDVLQKVSSQLKNSISNV
TKHRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQRQVLDLLAQLVQLRVNYCLLDSD
QVFIGFVLKQFEYIEVGQFRESEAIIPNVFFFLVLLSYERYHSKQIIGIPKIIQLCDGIM
ASGRKAVTHAIPALQPIVHDLFVLRGANKADAGKELETQKEVVVSMLLRLIQYHQVLEMF
ILVLQQCHKENEDKWKRLSRQIADVILPMLSKQQMLIDSHEALGVINTLFETLAPSALRP
VDMLLRSMFVVPCTMASVSTVQLWISGILAILRVLISQSTEDIVLSRIQELSLSPKLICC
QNILKLREGDNPLSAQVYPEQGDNKPPPEETFSRFLLQMVGILLEDIVTKELKVDLREQQ
HTFYCQQLGTLLMCLIHIFKSGTFRRITNAATRLFKGEGNNGNFYTLESLNNLVESIFPT
HPSLVLLWCQFLLLIDYTNYSWWSEVHLTPKRNSLSSTKLLLSPHMSTESDNPDPASKLA
ICNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHVQDLINLSHEPPVQDFISAIHRNS
AASGLFIQAIQSRCENLAAPTTLKKTLQCLEGIHLSQSGAVLLLYIDRLLCTPFRVLARM
VDTLACRRVEMLLAATPQNIVSQLPLEELDRMQEYLQSSGLAQRHQRLYSLLDRFRMTVA
PHTVSPLPSVTSHPLDGENQATLETLGPDKEWYVSLVRSQCFTHSDSALLEGAELVNKIP
PAERHSFMSSKDFNVSLLAPCLALGVNQISGEQDSTLFETTLTVILDLISGNVQQLPEEH
QVLQPLQQVESTAYWEKFSLLFGDSSVYCSLVALCRALAQYLVSLPKLPAEFHIRQEKEM
DFVKFMVLCVEAVSWHFVHEHIPLSLDLQAVIDCCCLTLQQPALWNLLASPECMTHACSL
IMCVRFILEAVAVEPGDQLLSPERRKNKTSEDAEEDQVDSKPVFIKMACEIMSEMVECLQ
TVLVFGHQWNRNIAAFLTPVFRNIIISLARLPLVNSYTRVPPLVWKLGWSPKWGGEFGTT
LPEIPVEFLQEKEVFREFIYRINTLGWTSRTQFEETWATLLGVLVTQPMVMDQDETQQEE
DTERTQINVLAVQSITSLVLSAMTIPVAGNPAVSFLEQQPRNKTLKALDTRFGRKLSVVR
GIVEEEIQAMVSKRDNIATHHSCQAWDPVPSLSAPTIGALINQEKLLLQINTEREIGNMT
YKLGQVSIHSVWLGNNITPLRQEELDEDEEDENENPAPSSPPMSPINSRKHRAGVDIHSC
SQFLLELYSQWILPTNTGKKTPAILISEVVRSLLSVSDLFTERNQFEMMYTALTELHKQH
PSEDEILNQYLVPAICKAASVLGMDKVIAEPVSRMIETTLRSTHMPSRIGALHGTLYILE
CDLLDDTAKQLIPIISDYLLSNLRGIAHCVNLHNQQHVLVMCATAFYLVENYPLDVGPDF
TSGIIQMCGVMVSGSEESTPSMVYHCVMRGLERLLLSEQLSRLDGEALVKLSVDRVNMHS
PHRAMTALGLMLTCMYTGKEKISPGRTTEPSPAAPDSESVIVAMERVSVLFDRIRKGFPF
EARVVARILPQFLDDFFPPQDVMNKVIGEFLSNQQPYPQFMATVVYKVFQTLHATGQSSM
VRDWVMLSLSNFTQRTPVAMAMWSLSCFFVSASTSKWISAILPHVISRMGKSEPVDVNLF
CLVAIDFYRHQIDEELDRRSFQSVFELVASPGSPYYRLLLCLQNVHKITVF
NT seq
9336 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggagaagctgatgagggcgtttgagtctcttaaatcctttcagcagcaa
caaggacctgtggtacccgaagagccggcacccaaagcgaagaaagatccttccacaaac
aagaaagatcgtgtcaatcactgtctaacaatatgtgaaaacattgtcgcacagtcttta
aggaattcccccgagttccagaagctgctgggtattgccatggagctgttcctactgtgc
agcgatgacgcagagtctgacgttcggatggtagccgacgaatgcctcaataaagtggtg
aaggctttaatggactctaatctccctagactgcagttggaactttacaaggaaattaaa
aagaatggtgccccacgaagcctacgggctgctctctggagatttgctgagcttgctcac
ctggttcggccccagaagtgcagaccatacctggtaaatctgcttccctgcctcacaaga
ataagcaaacgacatgaagagtccgtgcaggagactctggctgctgctatccccaaaatc
atggctgcctttggcaactttgcaaatgacaatgaaatcaaggttcttctgaaagcattt
gtagcaaatctgaaatctagttcccccactatgcgcagaacagcagctggatctgcagtg
agcatctgtctacattctcgaagaactcaatacttctacacttggcttctcaacgtactc
ttgggtcttcttgtccctgtcgaggatgaacacccgacccttttaattctgggagtttta
ctaacactacggtacctaataccactactacaacagcaggtgaaagatacaagtctgaaa
ggcagctttggggtaacacagaaagaggcggatatttctccttccgctgagcagcttata
cagatatatgagttgaccttgcattatacgcagcacagggatcacaatgttgtgactggt
tctctggagttgctgcagcagatatttagaacaactcctctggatctgctccatgtgctg
accacacctgggagtatagagcaggtcagcgtttgcagagatgagccatacagcaggagc
cggagtggaagtatagtggaattaatagctggtgggagttctacctgcagccctgtactt
gcaaggaaacaaaaaggcaaaatacatttgggagaagaggaaggcttagacgatgattta
gaaggcaagtctgatgcctctgctacaccttttgctgctacaaagaatgaagtgacttct
gatgtgaccgccacctcatcggccggcgcaaatcttgacgccccatctcatgacatcatc
acacagcagccgcgatctcagcacacgctgcagtcagactctgtggatataagcacttca
gacctgactaacactgtcaccgaaggggatgaagaggacattctgagtcatagttccagc
caaatcagtactgttcagtctgatccaaatatggaactgaatgagggaaccactcaggct
tcctctccagtgagtgacagctcacaaaccaccacggaaggtccagactctgctgtgacc
ccttcggacagttctgaaattgttttagatgctgctgatgaaaatcaatattctgggatg
cagattggacagctgcaagatgaggaggatgaaggagctattcttcaccaagaagaagct
ggggaaacttttgggaaatcctctttaggtctgaatcaaactcatcttttaaaaaccatg
ggccatagcagacagtcctcagacagtagtgtggaacgctttgtgcccaaagaagaatct
gtggatcctggtgatctggaaaacaaaccttcaaggataaagggagatattggacactat
atggataaagatgctgctcctttaattcactgtgtacgactcctgtcggcttccttcctg
ctcactggacagaaaaatgtgcttgttccagacaaagacgtgcgagtcagcgtaaaagct
ttggctgtcagttgtgttggagcagctgttgctttgtatccagaagctttgtttagcaaa
ttgtacaaactttcccctgaaaccaacgaacctcaagaaatacagtatgtttcagatatt
cttgattacatcaaccacggagatcctcaggttagaggagctacagcaatcctttctgga
accattgtgttttctgtactcacaaaagcacactttgaagcagaaacctggatttcaaag
gttaaagctaatacaggcaataccttttccgtgccagactgcattccattactgcagaaa
tccctgaaggatgaatcttctgttacatgcaaattagcttgtatggctgtcagacactgc
ataatgactctgtgctgcagctcgtacagtgagctgggactacagctaattattgatctg
ctcaccctgaagaacagctcctactggcttgtgagaacagagcttttggaaacacttgct
gagattgatttcagattagtcaattttatggaagcaagaactgaaaatttgcacagagga
gtccattattacactgggttgctgcatcttcaggatcgggtactgaacaatgttatcatc
agccttcttggagatgaagatgccagagttagacgtgtagcagcagcttccttagtaagg
cttgtgcccaaatttttttacaactgcgatcaggtccaggctgaccctgttgtagcagca
gcaagagaccaaagcagtatttatctgaaacttctcatgcatgaaacccaaccgccatcc
cactttgcagtcagcaccatcacaaggatctacagagggtacaatatacagcaaagccct
acagatgtctccatggaaaacaacctttccaaagtcatcacggcagtctcccatgcacta
actacatcgaccacacgtgcacttacgtttggctgctgtgaagctttgtgcctcctatca
gtaacctttccagtgtgcacatggagcgtaggatggcactgtgggtatgtgaccagtacc
aatgctcaaaccacccgaatacaagtttacaagaaccgtggacgttccttcagcatctca
caacaaagcccatcagaagaacccaggaaaagctgcactgctggaatgtccagtatgatc
ctctctctgatttcgtctgcctggttccccttagacctttccgcacatcaggatgccttg
gttctagctgggaatctgctagcagctactgctccaaaatctttgaaaaatccctggacg
tcagaagaagagataagccaggcagctaataaacaagaggagccttggccagctctgggt
gacaggacagtggttggcatggtggaacaactgtttattcacttactgaaggcaataaac
atatgtgctcatgtgattgatgatattactcccggaccagttgtaaaggtgcaacattat
gctactcttccttctcttaccaacccaccatctctaagtccgatccggcgcaaaggaaag
gaaagagatacggccgagcaaactgctgttccattaagcccaaagaagtctggtgaagga
atgccagcttcccgacaaacagaggcttcaggtactgcacagacaagcaaatcccttggg
agtttctaccatcttccttcatatctcaaattatatgatgtgttgaaagctacatatgcc
aactataaggtgacattagatctgcaaaataataatgagaagtttgggggttttctgcgc
tcggctctggatgtcctatcccaaatcttggagcttgccaccctcacagatattgggaag
tgtgttgaagaaatactgggatatctgaagtcctgcttcagccgggagccagtaatggcg
actgtttgtgtccagcaactgctgaaaacactttttggaaccaacttggcttctcagttt
gaggcattgtccttaaaccctagtaaaagtcaaggaaaagctcagcgtctgggctcatcc
aaccttcgcccaggactgtaccattactgcttcatggcgccgtacacccatttcacccag
gcactggcagatgcaagtctaagaaacatggtgcaggccgaccaagaacaggatacatca
gggtggtttgatgtccttcagaaagtttcttctcagctaaaaaatagcatcagcaacgtc
actaagcatcgagcagacaagaatgcgatccataatcacatccgtctgttcgagccttta
gttattaaagctctgaagcagtatacaacaaccacatcagttcagcttcaaagacaagtt
ctagatcttttggcacaactggttcagcttcgtgtcaactattgcctccttgactctgac
caggtgttcattggatttgtgttaaagcagtttgaatatattgaagtgggccagttcaga
gaatcggaagccataatccccaatgttttcttcttcttggtacttttgtcatatgagcgt
taccactccaagcaaatcattgggattcccaaaatcatccagctgtgtgatggcatcatg
gccagtggccggaaagcagtaacgcatgctattcctgctcttcagccgatcgtccatgat
ttgtttgtactgaggggagcaaacaaagcagatgctgggaaagagcttgaaacccagaag
gaggtggtagtgtcaatgcttctgaggcttattcagtaccatcaggtgctggaaatgttc
atcttggtgctgcagcagtgccacaaagagaacgaagacaaatggaaaaggctgtcgcgg
cagattgcagatgtcattctaccaatgctgtcgaagcagcagatgcttatagactcacat
gaagctctcggcgttataaatactttattcgaaacgttggctccttcagctcttcggcca
gtagacatgctgttaagaagtatgtttgtcgtaccctgcactatggcgtcggtgagcacc
gtccagctgtggatatcggggatcctggctattctcagagttctcatctctcagtccacc
gaggatattgttctatctcgtatacaggagctctcattgtcgccgaagcttatctgctgt
cagaatattctgaagctaagggaaggggataatcctttatctgcacaagtctatcctgag
cagggtgacaataagcctccccctgaggaaaccttctcccggttcctgcttcaaatggtg
gggatccttttggaggacattgtgacaaaggagctgaaggtggatctgagggagcagcag
cacaccttctattgccaacagctgggcaccttactcatgtgcttgattcacatcttcaaa
tcagggacattccggcgcatcacaaatgcagcaacaaggcttttcaaaggagagggtaat
aatggcaacttctacaccttagagagcctgaacaaccttgtggaatctatatttcctact
catccatcccttgtgctgctttggtgccagttcctgctccttatcgactatactaactac
agctggtggtctgaagtccacctaactcccaaaaggaacagcttatccagtaccaaatta
ttgctgagccctcatatgtcaacagagagcgacaatccagatccggcttccaaactggcg
atttgtaatcgagaaatagtgcgcaggggggcgctgatcctgttttgtgattacgtgtgt
cagaatctgcacgactcggagcatctcacgtggctcatagttaatcatgttcaggatcta
ataaatctgtcgcatgaaccgccagttcaggacttcattagtgcaatacacaggaattct
gcagccagtggcctcttcattcaagccatccagtcccgctgtgaaaacctggcagcaccg
accactctaaagaagacattgcagtgcttggaaggaatccatctcagccagtctggtgcc
gtgttgttgttgtacattgacaggctactttgtactcctttccgtgtgctggcccgcatg
gtggacacattagcttgtcgacgagtggaaatgctcttggctgctacccctcagaatatt
gtttctcagttgccgctggaagagctggatagaatgcaggagtatttacagagcagtgga
ttagcacaaagacaccaaagactttattctctgctggacagatttcggatgactgtagca
ccacatacagttagccccttaccttcagttacttcacacccgctggatggggaaaatcag
gcaacgctggagacgttgggccctgataaggaatggtatgtgtctctggtccgatcccag
tgctttacccattcagactctgctctgctggaaggagcagaactggtgaataaaattcct
ccggcagaacgacactctttcatgagcagcaaggattttaatgtgagcctgcttgctcct
tgcttagccctgggtgtgaaccaaatctcaggagaacaggacagcacattgtttgagaca
accctcacagtgattctggatctcatatccggcaacgtacagcaactacccgaagagcat
caggttctgcaaccactgcagcaggtggaaagcactgcctactgggagaagttcagcctt
ttgtttggtgacagcagcgtgtactgctctctggtggctctctgcagagcacttgctcag
tatttggtttccctgcctaaacttcctgcagaattccacatccgacaggaaaaggaaatg
gactttgtgaagtttatggtgctctgcgttgaggcggtgtcttggcattttgtacatgag
cacattccactgagtctggatcttcaggccgtaattgactgttgctgcctgactctccag
cagccggcgttgtggaaccttctggcgtccccagagtgtatgacacacgcctgttcccta
atcatgtgtgtaagattcatcctcgaggcagttgctgtagaaccaggcgaccagcttctc
agtccagaaagaagaaagaacaaaacttcagaagatgcagaagaagatcaagtggattcc
aaacctgtttttatcaagatggcctgtgaaattatgtctgaaatggtagaatgcctgcag
accgttttagtatttggccaccaatggaacagaaacattgcagcgtttctcacccctgtc
tttagaaatattatcattagcttggcacgcttgcctttagtcaatagttacaccagagtt
cctcctttggtctggaaacttgggtggtctcctaaatggggcggtgaatttggaactact
ctcccagaaatccctgtagagttcctgcaagaaaaagaggtttttagagagtttatctac
cgtattaatacactgggatggaccagtcgcactcagtttgaggagacatgggccaccctt
cttggagtcctggtgacacagccaatggtaatggaccaagacgagactcagcaagaggaa
gacacagaaaggacccagatcaatgtcctggcagtacaatccatcacatctttagtcctg
agcgccatgaccattcctgttgctggaaaccctgccgtcagcttcctagagcaacagcca
aggaacaagaccttaaaagccctggacacaagatttggcaggaaactgagcgttgtgaga
ggaatagtggaagaggaaatacaagctatggtttcaaagagggataatattgcaactcac
cactcatgccaagcgtgggatcccgttccttctctgtctgctccaacaataggtgctctg
atcaaccaagagaagctcttgctgcagataaacactgagcgggagattgggaacatgacc
tataaattaggacaggtctccattcattcagtctggctggggaataacatcaccccactg
aggcaagaagagcttgatgaagacgaggaagatgagaatgaaaaccctgctccttcatca
ccacccatgtctccgataaactccaggaaacatcgggccggggtagacatacattcttgc
tcacaattcctgttagagctgtacagtcagtggatccttcccaccaacactggaaaaaag
actccagccattctgatcagtgaagtggtgagatcgctcctgagtgtgtctgatttattc
acggagaggaatcagtttgagatgatgtacactgcactgacagagctgcacaaacaacac
ccgtcggaagatgaaattctcaaccagtatctggtacctgccatctgtaaagctgcctct
gtgctgggaatggacaaagtcattgcggagcccgtgagccgcatgatagagacaacacta
cgcagcacccatatgccgagccgtatcggagcactgcatgggacactttatatcctagag
tgtgacctgctcgatgatacagcaaagcagctcatacccatcatcagcgactatctgctg
tccaacctgagagggatagcccactgtgtgaatctccataaccagcagcatgtcctcgtt
atgtgcgccacagctttctacttagttgagaactacccgctggacgtcggaccagacttc
acgtcgggaatcatacagatgtgcggagtgatggtctctgggagcgaagagtcgaccccc
tcgatggtgtatcactgtgtcatgagaggactggagcgcctcctgctgtccgagcagctg
tccagactggatggagaagccctggtgaaactgagtgtggacagagtgaatatgcacagc
cctcaccgagcaatgactgcactcggactgatgctcacctgcatgtacacaggaaaagag
aaaatcagtccaggccgcaccacagagcccagtcctgcagctccagacagcgagtctgtt
attgtcgccatggagagagtgtctgtgctgtttgacaggatacggaaaggattccctttt
gaagcccgggtagtagcgaggattctgccgcagtttttagacgactttttccctccacaa
gacgtgatgaacaaggtcatcggggagtttttatcaaaccaacagccctacccacagttc
atggcaaccgttgtttacaaggtctttcagacgttgcatgccaccgggcagtcctctatg
gtccgtgattgggtcatgctgtctctctcgaacttcactcagcgaacacccgttgccatg
gcgatgtggagcctttcctgcttctttgtcagtgcttccaccagcaagtggatttcagca
attctccctcatgtcattagcagaatgggcaaatcggagccggtggacgtcaacctgttc
tgcctggttgccatagacttctacagacatcagatcgacgaagaactggaccggagatcc
tttcagtcggtgtttgagctggtggcttcccccgggagtccctactatcgcctgttgttg
tgtttacagaatgtgcataagatcacggtgttctga
DBGET
integrated database retrieval system
