Xenopus laevis (African clawed frog): 108698224
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Entry
108698224 CDS
T01010
Symbol
setx.L
Name
(RefSeq) probable helicase senataxin isoform X1
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108698224 (setx.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108698224 (setx.L)
5.6.2.5 RNA 5'-3' helicase
108698224 (setx.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108698224 (setx.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
AAA_30
UvrD-helicase
AAA_22
ResIII
AAA_16
SLFN-g3_helicase
Helicase_RecD
MHC2-interact
nSTAND3
DUF4164
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
108698224
NCBI-ProteinID:
XP_018085035
Xenbase:
XB-GENE-6487478
UniProt:
A0A8J0T9Z8
LinkDB
All DBs
Position
8L:7892489..7920894
Genome browser
AA seq
2521 aa
AA seq
DB search
MSTCRWCTPGGALTTELLKKYATKELPNEDIVGANEDLCYCMQCVGEYHRVRDEVPLLHK
ALWQMETARLIIQLEKSMQEEIEEDDELFLVEEDGEKQLFGYTGPNFESNLRVPLLEILK
YPYLLLNKHVTELCTEALCKMEHANNPFQVYEKLPGVYLLLVHPNEAVRRWAIMTARTQG
KVDRDDYYDLKEVFTCLFKVIELGLFENPDIYGNSEVEEGKLILLPSHLYDISNYKNYWL
GICMLLTVLEEQAMDSLLLSHDKQNDFMQSILHVMEKNTEDENANPFWPALHCFMIILDR
LGSKVWGQLIDPIQAFQTIISSPSYTSEIETIRNSYSRPTKMEPHNDDNDLDISCSQMVY
SFKTEKPNKDTGWKKAISPDYCPNMYEEMQSLANVLQSEIGQDMRVHDSTFLWFLPYVQS
VMDLKDLGVPYIIEVIHHLYFEIKDVLNQRVQQCDKVTELFVLVLVSIIELHRNKKCLYL
LWVSCHKWVEALVRCSLLPVKDVQAKSNSKMAYGITCSPTQSSSSVQHSCLQLIRSILRE
GCQLGQQTTCMQYLDKLNLVLRGNMSRTLELNSNEVRDLQACLRQIVKIIKDKASAAPSS
TLEQNTNRIEFVPFIKSESVDDDEYWDRACSSLEKPSPATSPTEGFDGACWLTVKREPEE
DKCSESELNYCKPTSSTVAVGIKKESIIQSEPAPPALTGEQQNRKPKQNLSELKSKLSKV
LQKSSFKRQNSLPENINQKDEVEKQVPLESSEKCIPSTKPVKSEPHDSLFKPPSCNSSYS
CSSSNIAVTKQLQRLSLENRDPEVKTVSVKTEAPLEDRQAPLENQISVVNSCEKRSSEPA
SEHCETSSPDDDDNLPLFVLRKKLLQKNKTQLTDSQVDRDLDALSMAAQAKSMNFHLDSS
QDSVISQDQCQIQRKVKGTARSPHIDSSSSDTDISSDHIITISDSEDEESPNIATIKSEK
TSPRGLCPSTSTSEFSKQIAEARIKSEPPPSLTCDDYDSQLFEFETEDEVYSVWQDPYDD
QKKPVVASSHSETSAELPISDPADTDMNNEFNEWGYDTDYISDDVLEKAAEAAEEMLTDS
KQGNGLQKKNESVGSEGNLSVKCVHSSSFYRKDTPVTTAKHGEKTNIYSPKEASPLPSKV
VHGKKTEAVVAQKVKSKSKELKRTKSPLKSGGKNVRRESLIRTSPAVIPPKKIRTGPDPS
STVEKLGFKKAPRKAFDLSQRSLDSLAELRNHGKMAGVVEPKRTKTKLISPQSLMVKCNK
QMLACQDRQFYLQSRPKIDGKRKQAEASEGRSRKPENSSHKVDKNGNSGHFQATSSHAEV
GSSTPRDDRKLSNNKECLEMSRTSANMSTAQNVEVPLSSKVENSSSHLLEQSVFSLSGDN
APTDDKESNYDEDDNDLFLTQMDPVDMEICSQVEYDIAIGDLEKGDTPQISNFSGSDAEM
AKFATGIGTELPKMDDGLPMCKYRDCPEMVKDAGDHCPKHTPPEKVDDHLFAKPGLPPSL
QKLSKPSTTKVFVLSNTSRTASLTKDIENLRQPQNATKAPIPKLPKPLTAQNRALDANSV
LKPLNNQSNMPSKPSYTAVPEAGKSSPYTSQKPLQQRDQGWLMRELLRWTFEMFDNVSQF
GPPSNLSQLPLVKVPLKFSSYEEYFNVYFPLMLLNTFESLAQDWSVKQQAINTHMCKLHL
QTFCPDAQVNRGEFLAWFRDTDLCVQRHPKEDDLVFLCLPESGEEAQSHGAMVYHTGYVS
RFNRSQKTVNQEKEQYTLCDLCIQTKGNLSAFRNQQVRCFVIGSLITTQRQFRALLQLQR
NPLFRPIIMPNPTDFFPRDNVASETSSFPSLKEYNSDQKYAIERAYVMVKQQPRLPRICL
IHGPPGTGKSKTIVGLLYRILMEKDSSSTVPVQNLNAKNKRNRVLVCAPSNAALDDLMKK
IILEFKEKCYNKNNPLGNCGDINLVRLGAEKTISNDVVKFSLDCQVNHRITRAQQDQGLH
KQKEMLDKKLDELSRRRALEKCNKNTQCAPLDEEIARLSKERQLLANSLKEVRRRPQELQ
RTIILESHIICCTLSTSGGILLESAFRQLGQEPFSCVIVDEASQSCEVETLIPLLHRCSK
LVLVGDPEQLPPTVISMKAEDLGYGQSLMSRMCRFLESTGTKSPVLQLTMQYRMHPDICL
FPSHYFYKRMLKTDRATEEVRCSSDWPFQPYMVFDVADGYERKERESFCNPQEIKVAVAL
IKLIKSRKKDFCFRNIGVITPYRAQKMRIIEELKRAFANDIKPGEVDTVDGFQGRQKDCI
IVTCVRANSTQGSIGFLASRQRLNVTITRAKFSLFILGSLRTLMENKDWNHLIQDAQRRG
ALIKTKEEHYQRDVNRILKLKPVVQRAPLNPSSRPEEKHKDNAATSPRIETPVEITQPPR
KPLCPPSRPVIHPAVDCRRDSFKTRNAPSGSTVGTLPHAQRSKLQDPRLARPPPTSNSAQ
NSTHSSRPSSSVAGSSHPARRDSRTVSDGSRSSNSWNRDWDRGRKRTSELEQDPKKRKLS
R
NT seq
7566 nt
NT seq
+upstream
nt +downstream
nt
atgagcacttgtcgctggtgcacgcctggtggtgccctcaccactgaacttctcaagaag
tatgccacaaaggagctgcccaatgaggatattgttggggccaatgaggacctctgctac
tgcatgcagtgtgtgggggagtaccatcgtgtccgagatgaggtcccactccttcacaag
gccctttggcagatggaaacggcacgcctcattatacagctggaaaagtcgatgcaagag
gagatagaagaagacgatgagctctttttagtggaagaagatggagagaagcagcttttt
gggtacacaggccctaattttgaaagcaacctacgggtgccgcttttggaaatcctcaag
tacccctacttgcttctgaataaacatgtcactgagctctgcactgaagctttgtgtaag
atggaacacgctaacaacccctttcaagtgtacgaaaagcttcctggtgtttacctgctg
ctggtgcatcccaacgaggctgtccgtcgttgggctattatgactgctaggacgcaaggc
aaagttgaccgcgatgactattatgacctgaaggaggttttcacgtgcctgtttaaggtc
atcgaactcggcctctttgagaatccagatatctatggaaattcggaagtcgaagaagga
aagttaatccttttaccctcgcacttgtatgacatctccaactataaaaattactggctg
ggtatctgcatgttactgactgtccttgaagaacaggctatggattccttgctcctgtct
catgacaaacagaacgatttcatgcaatccatacttcacgtcatggagaagaatactgaa
gatgaaaacgctaatccattctggcctgccctgcactgtttcatgatcatcctcgatcgt
ctgggatccaaagtgtgggggcagctgattgatcccatccaggccttccaaaccatcatt
tcaagccccagttacaccagtgagattgaaactattcggaacagctacagcagaccgacc
aaaatggaaccgcataatgatgacaatgacctggacatttcgtgcagccagatggtatac
agtttcaaaactgaaaaaccaaataaggacactggatggaagaaggctataagtcccgat
tactgtcccaacatgtatgaagaaatgcagagccttgcaaatgtcctgcagtccgaaata
ggccaagatatgcgagtccacgacagcacctttttgtggtttcttccctacgttcagtct
gtgatggacctcaaggatctgggggtgccgtatatcatcgaggtcatccatcatctttat
tttgaaatcaaggatgtccttaatcagcgagtccagcaatgcgacaaagttacagagctg
ttcgttctagttttggtatctatcattgagctgcacagaaataaaaagtgcctttattta
ctttgggtcagctgtcataaatgggtcgaagccttggtgagatgctctctgcttcctgtc
aaagacgttcaagccaaaagcaattcaaaaatggcctatgggatcacctgctccccgaca
caatcttcctcatctgttcagcactcttgtctgcagttgatacgaagcatcttgcgggaa
ggctgccagcttgggcagcaaacgacttgcatgcaatacctggacaaactgaatctcgtt
cttaggggaaatatgtcacgaacccttgaactcaacagcaacgaggttcgcgatttgcaa
gcgtgtttgcggcaaattgtaaaaatcattaaagacaaggcttctgctgctccgagttct
actttggagcagaacacaaataggattgaatttgtccctttcattaaaagtgaaagtgtt
gatgatgatgagtactgggacagagcatgcagttctttagagaaaccatctcctgcaacg
agtcctaccgagggcttcgatggagcatgttggcttactgttaaaagggaaccagaggaa
gataagtgttcagagtcggagttaaattactgcaagcctaccagtagcactgtagctgtg
ggaattaaaaaggaatctataatacagtccgaacccgcaccccctgccctaactggggag
cagcagaaccgaaaacccaaacagaatctgagtgaactgaaatcaaagttgtccaaagta
ctacagaaatcttcattcaaaaggcaaaattcacttccggaaaacataaaccaaaaggac
gaggtcgagaagcaggttcccctcgaatccagcgaaaaatgtataccgtctactaaaccg
gttaagtcagagcctcatgactctttgtttaaaccaccctcttgcaatagtagttatagt
tgcagtagtagcaacattgcagtgactaaacagctccaacgtctttccttagaaaaccgg
gatccagaggtcaaaacggtttcagtgaaaacggaagctccgctagaggacagacaagca
cccctagaaaaccaaatatcagtagtaaacagctgtgaaaaacgtagctcagaacctgca
tcggagcactgtgaaacatctagtccagatgacgacgataaccttcctctatttgtgctc
cgtaaaaagcttttacagaaaaacaagacacaactcacagattcgcaagtggatcgagac
cttgatgccttatccatggcagcgcaggcaaagtctatgaactttcatcttgactccagc
caagatagtgtcatttcacaagaccaatgtcagattcagaggaaagttaaggggactgcc
agatctccacatattgatagctcatcgtctgatacagatatatcctccgatcatatcatt
actatctctgattcagaagatgaagaaagtccaaacatcgctaccattaagtctgagaag
acaagtcccagaggcctttgtccttcaacctcgacttcggaattttcaaagcaaatagcc
gaggcccggataaaatctgaaccaccaccatctctaacatgtgatgactatgattcccag
ctctttgagtttgaaactgaggatgaggtttattctgtttggcaagacccctatgacgac
cagaaaaagccagtagtagcttcatcacacagtgaaacttctgccgaactgccaatttct
gatcccgctgatactgatatgaataatgaattcaatgaatggggttatgacactgattac
atttcagatgatgttctagaaaaagcagctgaggctgcagaggaaatgttgactgattcc
aaacagggaaatggtcttcaaaaaaaaaatgaaagcgtgggttcagaaggaaatctttct
gtcaagtgtgtccattccagctcattttacagaaaagataccccagtgactacagctaaa
cacggggagaaaaccaatatatatagcccaaaggaggcatctccattaccttccaaagtc
gtacatggcaaaaaaacagaagctgttgttgcccaaaaagtgaaatccaaatctaaagaa
ctgaaaagaactaaaagccccttgaagtcaggggggaaaaatgtaagacgtgaaagtctc
atcagaacgtcacctgctgtaatacccccgaagaaaattcgcactggtccagatccatct
tccacagtggaaaaacttggcttcaaaaaagcaccacgcaaagctttcgacttgtctcag
cgttcactggatagtctagcagagcttcggaaccatggcaaaatggcaggggttgtggag
ccaaagaggacaaaaaccaagcttatttcccctcaatcattgatggttaaatgtaacaaa
caaatgttggcttgtcaagatcggcagttttaccttcagtccagaccaaaaatcgatgga
aaaagaaagcaggctgaagcctctgagggccgcagtcgaaaacctgagaattcgtcacac
aaagtcgacaaaaatgggaattcgggacatttccaggccaccagtagccatgctgaggtt
ggctcaagcacacccagagatgatcggaagctaagcaataacaaagagtgtttggaaatg
agcagaacctctgcaaatatgtctaccgctcaaaatgtggaggtgcctctgagctctaaa
gtggagaattctagcagccatttattggagcaatcagtgttttctttgtccggtgataat
gcccccacagatgacaaagagtccaattatgatgaagatgataatgatttgttcttaacg
cagatggatccagttgacatggagatatgttcacaagtagaatatgacattgctattggt
gaccttgaaaagggtgacacaccacaaatttccaatttttcgggatcagatgctgaaatg
gccaaatttgctacaggcattggtactgagctgcccaaaatggatgatgggttgcccatg
tgcaaatacagagattgcccagaaatggtgaaggatgctggagatcactgtcctaaacac
acaccccccgagaaagttgatgaccatctgtttgccaaaccaggcttgcctccgtctctt
caaaaactttctaaaccttctactactaaagtgtttgttttaagcaacacttctaggact
gccagtctcacaaaagacattgaaaacctcagacagccacaaaatgctaccaaggctcct
ataccaaaactgcccaagccactgactgcacaaaacagggccttggatgcaaatagtgtt
ttaaagcctctgaataatcaaagtaatatgccttccaagccaagttacacagcagtaccg
gaggccggaaagtcaagtccatacacttcccagaaacctctccaacagcgtgaccaaggt
tggctcatgagagagcttctccggtggacgtttgaaatgttcgacaatgtatctcagttt
ggaccccccagtaacctcagccagctacctcttgtgaaagttcccctcaagttttcaagt
tatgaagaatatttcaacgtttatttccccttaatgctgcttaatactttcgaatcgctg
gcccaggattggtctgtgaaacaacaagccattaatactcatatgtgcaagctacacctg
cagaccttctgccctgacgctcaggtgaatcggggagagtttctggcatggttccgcgat
accgacctgtgcgtgcagcggcacccgaaagaagatgatttggtgtttctctgcttgcct
gagtcgggggaggaagctcaatcccatggtgcaatggtctatcacacgggttacgtatct
cgcttcaatcgctcacagaaaactgtgaaccaggagaaggagcagtacacattgtgtgac
ctgtgtatccaaactaagggaaatctgtctgccttccggaaccagcaagtgcggtgcttc
gtgattggcagcttgatcaccactcagaggcagttcagggcacttcttcagctgcagaga
aatccgctgtttaggccgatcataatgcccaatcctacagacttctttcctagagataat
gtagcaagcgagaccagctcattccctagtttaaaggaatataacagtgatcagaagtac
gcaatagagcgagcctatgttatggtgaagcaacaaccgcggctgccacggatctgtttg
atccacgggccaccaggaactggcaaatccaagaccattgtggggctcctgtacagaatc
ctcatggagaaggacagcagcagcaccgtcccggtgcagaacctcaacgccaaaaacaag
cgcaacagagtcctcgtctgcgctccttctaacgccgctctcgatgaccttatgaaaaag
atcattctggaattcaaggaaaaatgctacaataagaataatcctttagggaactgtgga
gacataaatctagtgcgcctgggagcagagaaaactatttctaacgatgtggtcaagttt
agcctggactgccaagtgaatcaccggatcacccgagctcagcaggaccaggggctgcac
aagcagaaagaaatgctagacaaaaagctggatgagctgagccgtcggagagctctggaa
aagtgcaacaaaaacactcagtgtgcgccactggatgaggaaatcgcccgactctcgaaa
gaaaggcagcttctcgcaaactctctgaaagaagtgcggaggcgccctcaggaactacag
agaactatcatcttagagtctcacatcatctgctgcaccctgagcaccagcgggggcatc
cttcttgaatcagccttcaggcagctgggacaagaaccctttagttgcgtcatcgtagat
gaggccagccagtcatgtgaagtagagaccctcattcctcttctccatcgatgctctaaa
ctggtcctggttggagatccggagcagctcccacccacagtgatctctatgaaagcagag
gatcttggctatggacaatcccttatgtcccgcatgtgccgttttctggaatctacaggt
acaaagtctccagtgctgcagctgaccatgcagtatcgcatgcaccccgacatctgcctc
ttcccatctcattacttctacaagcgcatgttaaaaacagaccgggcgactgaggaagtc
cggtgctcctctgattggcctttccagccgtacatggtgtttgacgttgctgatggatat
gaaaggaaagagcgagaatcattttgcaaccctcaggaaatcaaagtggctgtggcactt
atcaagcttattaaaagcaggaaaaaagacttttgtttccgcaacatcggggtgatcacc
ccgtaccgggctcagaagatgaggatcattgaggaactcaagagggcttttgccaatgac
atcaagccaggggaagtagacactgtggacggttttcagggtcgccagaaagactgcatc
attgtgacatgtgtccgtgccaactctacccaaggcagcatcgggttcttggccagtcga
cagcgattgaatgtaacgatcacaagagccaaatttagcctttttatcttaggaagcctc
cgaaccttaatggagaacaaagactggaatcacctgatccaggatgcacagagaaggggc
gctctgattaaaaccaaagaggaacactaccagagggatgtcaaccggatccttaagctt
aaacctgtggtgcagagagctccattgaatccgagcagccgaccagaggagaaacataag
gacaatgctgccacatctccccgtatagagactcctgtggagatcacccagcccccaaga
aaacctctctgtcccccttcacgacctgtgatccacccagctgtagactgtagaagggat
tcttttaaaacccgcaatgcccccagtgggtcaactgtcggtaccctaccccatgctcaa
aggtctaagcttcaagaccctaggctggcacgacccccacccacatcgaactctgcccaa
aatagcacccacagctcccgtccctcttcctcagtagcaggcagctcacacccggcacgt
agagactcacgcactgtaagcgatggcagcaggagcagtaacagctggaacagagactgg
gaccggggtcgtaaaaggacttctgaactagaacaggatcccaagaaaagaaagctgtct
cgttag
DBGET
integrated database retrieval system
