Xenopus laevis (African clawed frog): 108698362
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Entry
108698362 CDS
T01010
Symbol
zc3h12b.L
Name
(RefSeq) probable ribonuclease ZC3H12B
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108698362 (zc3h12b.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
108698362 (zc3h12b.L)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH_4
UBA_N4BP1_C
Motif
Other DBs
NCBI-GeneID:
108698362
NCBI-ProteinID:
XP_018085280
Xenbase:
XB-GENE-17332764
UniProt:
A0A1L8F772
A0A974H779
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Position
8L:complement(37023337..37086409)
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AA seq
849 aa
AA seq
DB search
MTAWSMVKKLEMEKRPSKERAAAKEMEYSQDLGDCSGESDEWTSSESEAEQQIGRSGLRG
YGNTLFKEADISSKPHRQLCRSPCLDRPSFSQSSIQVPIDNQIKLAEAKSNLDREYQAKM
DFALKLGYCGEQIQAVLNKLGAEALINDILAELVRLGNKGESETQSSGSGSSGILVPRGP
CTKEIASPELSLEDEIVDNTENLRPIVIDGSNVAMSHGNKEVFSCRGIQLAVEWFLEKGH
KDITVFVPAWRKEQSRPDAPITEQEILRKLEKEKILVFTPSRRVQGRRVVCYDDRFIVKL
AFDSDGIIVSNDNYRDLQNEKPEWKKFIEERLLMYSFVNDKFMPPDDPLGRHGPSLENFL
RKKPVIPEHKKQPCPYGKKCTYGHKCKYYHPERVNQPLRSVADELRISAKLSAVKTMSEG
ALMKCGMVPSCLRGDGIIETKRIAPKRQSDPSIRSAAVEPEQRLSAARKSEANSVPSLVS
ALSVPILPPTKSHAVSALNTRSASSPSQFSHQKSSLEHMGSVHYPPILVTNSHGNSVSYT
EEYPKYESLGDHGYYSMISDFSNLSISSMHSSEYYQPEQERAGFSRNSSPCPESCVSHNS
SDSYSSYSDLYLGISDPGLEDNMKPSRQPQSRLQPFAHGYHEALTRVQSYGQEQPMQASR
KQSSSHLALHIQHPLVGARSSCPGDYPGQENMHPGANAQPGRALVMTRMDSISDSRLYES
NPMRQRRPPLCREQHASWDPLPCPTDSYGYHSYPLSSNLMQPCYEPVMVRSMPEKMEQLW
QSPYWPPMSGEPREQHIIPEHQYQTYKNLCNIFPPGIVLSVMEKNPHMTDAQQLAAIIVS
RLRSGHHHC
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgacggcctggtccatggtcaagaaactggaaatggaaaagaggccctctaaagagagg
gcagctgcaaaagagatggagtactcacaggatctgggagactgcagtggggaatctgac
gaatggaccagctcggaaagtgaagcagagcaacaaatagggcggagtggactgagggga
tatggtaacaccttatttaaggaagcagatatctctagcaaaccccatcgtcagctgtgc
aggtctccttgtctggaccgtcctagtttctctcagagcagcattcaggtccctatagac
aaccaaataaaacttgcggaggcaaagagcaatcttgacagggaataccaagcaaagatg
gactttgccttaaagttgggctattgtggggaacagatacaagctgtccttaacaagctg
ggcgcagaagcacttattaatgacatcttggctgagctggtgaggctgggcaacaaggga
gagtcagagacacagagcagtggaagtgggagcagtggaatcctggtacccaggggaccc
tgtaccaaagagattgcaagtccagaactgtctttagaagatgaaatcgtagacaacact
gaaaatctaaggcctattgttattgatggaagcaatgtggccatgagccatgggaataaa
gaggtcttctcctgccgagggatacagctggctgtggagtggttcttggagaaaggccat
aaggatattactgtgtttgtgccagcatggaggaaagagcagtcccgccccgacgcacca
atcacagagcaggagattctacggaaactggagaaggagaagattttggtatttacacct
tcccgcagggtgcagggcaggagagtggtgtgttacgatgatcgattcatagttaagctt
gcctttgattctgatggaattattgtatccaacgacaactatcgcgacctccagaatgag
aaaccagagtggaagaaatttatagaagagcgcctccttatgtactcatttgtgaatgac
aagtttatgcctccagatgatcctttgggaaggcatggccccagtttggaaaatttcctg
cgaaaaaagccagttatccctgagcacaagaagcaaccctgtccttatggtaaaaaatgc
acatatgggcacaagtgtaaatattaccatcctgaacgtgtgaaccaacctctgcgctca
gtggcagatgagctaaggataagtgcaaaactgtcagcggtgaagactatgagtgaaggt
gctctgatgaaatgtggaatggtgccatcctgcttaaggggagatgggatcattgaaaca
aagcgtattgcccccaagaggcagtcagaccctagcatccgttctgcagccgtggaacca
gagcagaggctctcggcagctcgcaaatctgaagccaattctgtgccatccctggtgtct
gctctgagcgtcccaatccttccccctacaaagagccatgctgttagtgctttgaatacc
cgatcagctagcagcccatcacagttctcccaccagaagtcatctctggagcacatgggg
agtgttcattatcctcctatcctggtgaccaacagtcatggcaactcagtgagctataca
gaagagtacccgaaatatgagtctctaggagaccatggatattactccatgatcagtgat
ttttctaacctgagtattagcagcatgcatagctcagaatattaccagccagaacaggaa
cgagcaggtttttccaggaactcaagcccttgcccagaaagctgcgtgagtcacaacagc
agtgactcctactcctcttatagtgacctgtatctaggtatatctgaccctggccttgaa
gataacatgaagccttcaaggcaaccacaaagccgcctgcagccatttgctcatggttat
catgaagccttaaccagagttcagagctatgggcaagagcagccaatgcaagcttcacgg
aaacaatcctcttcccatttagcccttcatattcaacatccgctcgttggggcacgatcc
agctgcccaggagattacccaggacaggagaacatgcaccctggtgccaatgctcagcca
ggtagggcattggttatgacccgaatggatagcatatcagattctcgcctctatgagagc
aatcccatgaggcaaaggagacccccactgtgtcgggagcagcatgctagctgggacccc
ttaccatgtcccacagattcatatggctaccattcatacccactgagcagcaacctgatg
cagccctgctatgaaccagtcatggttaggagcatgcctgagaagatggagcagctctgg
caatccccctactggcccccaatgtcaggggaacctagagagcaacatatcattccagag
catcagtatcagacctacaagaacctttgcaacatctttccaccaggaattgtcctctct
gtgatggagaagaacccacatatgacagatgcccaacaacttgcagccatcattgtttca
cggttacggtcaggtcatcatcattgctag
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