Xenopus laevis (African clawed frog): 108698385
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Entry
108698385 CDS
T01010
Symbol
thoc2.L
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03013
Nucleocytoplasmic transport
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108698385 (thoc2.L)
09122 Translation
03013 Nucleocytoplasmic transport
108698385 (thoc2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108698385 (thoc2.L)
03041 Spliceosome [BR:
xla03041
]
108698385 (thoc2.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108698385 (thoc2.L)
Spliceosome [BR:
xla03041
]
Complex C
Other components
EJC/TREX
108698385 (thoc2.L)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108698385 (thoc2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
108698385
NCBI-ProteinID:
XP_018085308
Xenbase:
XB-GENE-17346865
UniProt:
A0A1L8F7C4
A0A974H776
LinkDB
All DBs
Position
8L:complement(39960787..40038876)
Genome browser
AA seq
1588 aa
AA seq
DB search
MAATLLPADWIKNWEKSGKNDFLQLCRSLSEKGQEFVTFTEIQQVLYEFACQVVKGNLKY
DQVAGVFAEIIALRDDMPSILADVFCILDVETSCLEEKWRRDHFTQLVSSCLYLVSDTIL
KERLDPDTLESLGLIKQSQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGSITSDLILENIKSLIGCFNLDPNRVLDIILEVYECRPDHDDFFAPLIESYMCMCEPQT
LCHILGFKFKFYQEPSGETPSSLYRVAAVLLQNNLIELEDLYVHLLPAESSIIEEYKKEV
IEAKQIVRKLTMVVLSSDKGEEKEKEKDEEKTEKPPDNQKLGLLESLLRIGDWQHAQSIM
DQMPPYYAASHKPIAVALCDLIHKTIEPLYRRMGVPKGAKGSRIVPLQSKRAPKQAESFE
DLRRDAFTMLCYLGPHLSHDPILLAKVVRLGKALMKESQSETNAEEKERMEVLFSCLLSV
TDQVLLPAITLLDGNACMSEELWGMFKCFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTI
DRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTS
LNYDVLAYCIIEALANPEKEKMKHDDTTISSWLQSLASFCGAIFRKYPIELGGLLQYVAN
QLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAVTGGEQLKAEGGYFGQIRNTKKSS
QRLKDSLLEYELALPLCLLMAQQRNGVVFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQHKV
HKYITSCELVMSPVHEAVISLHPPKVWEDISPQFYSTFWSLTMYDLSVPSNSYSREINKL
KSQMRAIDENMDMPPNKKKKEKERCTALQEKLVEEEKKQSEHVARVLQRMKLEKDNWLLA
RSTKNETITKFLQLCIFPRCIFSAIDAVYCARFVELVHLQKTPNFSTLLCYDRVFSDIIY
TVASCTENEASRYGRFLCCMLETVTKWHSDRNVYDKDCGSYPGFVTILRAASFDSGNKAD
QLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALER
RVHKICQDEKEKRPDLYALAMGYSGQLKSRKNFMVPENDFHHKDPPVRSSVPPPVQNGPG
TVSQSASMLVNAAKPEEGTTEETDKLKEKAQSALKVVTKAASTAPKVTASNGNSTSASKV
LKEKEDKDKTGKEKEKDKREKTPVAPLETKAPGKEAKEKVKEDRPNKDEKLRDVKEKTPK
ADKEKEKAKKEEKSQKEEKSKAIMMSNESKISSDKERERELSREKEALKEAKTKESSKSA
EKSAVSGSLKSPVPRTDMPETEREQKRRKIDTHSSPSHSSAVKDNLSEFKDSSTKHYTNH
TTPTISKNKEKEVEKKELEKSRERSREREKKEEKERKEKKRDHSNGDRELMQESKRRKEE
NGTGSSSKHSKSESPSDSPRSNEKERNKSKSSSKEKGDFMKSEKMEKSSSGSKKESRHDK
EKSEKKEKRESTGGKEEKKHHKSSDKHR
NT seq
4767 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacgttactacccgctgattggataaagaactgggaaaaatcaggaaaaaac
gacttcttgcaactatgccgcagcctcagtgaaaaaggccaggaattcgttacattcaca
gaaattcagcaggtcctgtatgaatttgcatgtcaagttgttaaaggaaatttgaagtac
gatcaagttgctggcgtttttgctgaaataatagccctcagagatgacatgccctcaatc
ttagcagatgtattttgtattttggatgtagaaacaagctgtttggaagaaaaatggaga
agagaccattttacccaactagtatcatcctgtttgtatttagtctcagacacgattctg
aaagagcgcctagatccagacacgctggaatccctggggcttatcaaacagtcacaacag
ttcaaccagaaatctgtgaaaataaagaccaaacttttttataagcaacagaaatttaat
ttattacgtgaagaaaatgaaggctatgcaaagctgatcacagaacttggacaagatctt
tcgggaagcataaccagtgatttaattcttgaaaatattaagtctttaatcggttgcttt
aacctggaccccaacagagtgctggatatcattttagaagtgtacgaatgtcgaccagac
catgatgatttttttgcgccattgattgaatcatacatgtgcatgtgtgaacctcaaaca
ctgtgtcatatccttgggtttaaattcaagttttatcaggagcccagtggagaaacccct
tcttctttgtacagagtagcggctgtgcttttgcaaaacaatctcattgaactagaggat
ctttatgtgcatcttcttccagcagagagtagcattattgaggagtacaagaaggaagtg
atagaggccaagcagattgtcagaaaacttaccatggtggtcttgtcctctgataaaggc
gaagaaaaggaaaaagaaaaggatgaagagaagacagaaaagcctcctgacaaccaaaag
ctaggcttgttggaatccctactgaggattggcgactggcaacatgcgcaaagtattatg
gatcagatgcctccatattatgctgcttcacacaaaccaattgccgtggctctgtgtgat
ctaattcataaaactattgaaccgctttatcgaagaatgggggtacccaaaggtgccaaa
ggatctcgtattgttcccttacaaagcaagagagccccaaagcaagcagaatcatttgaa
gacttacggagagatgccttcactatgctttgctacctgggcccacatctttctcatgac
cctatattgcttgcgaaagtagttaggcttggaaaagcattaatgaaagagtcacagtct
gagacgaacgcagaagaaaaagaaaggatggaggttttattcagttgcttgctcagcgtt
acagaccaagtgttactacctgctattactttattggatggcaacgcctgtatgtcggaa
gaactttggggaatgttcaaatgctttccttaccaatacagatatcgtctgtatggtcag
tggaagaatgaaacatacaacagccacccgttgctggtcaaagttaaggcacaaacaatt
gacagagccaagtacatcatgaaacgtctgacaaaagaaaacgtcaagccatcaggaaga
caaataggaaaactaagccatagcaatccaaccattctgtttgattatattctttcgcag
atccaaaagtatgacaacctcatcacaccagttgttgattcgctgaaatacctaacttca
ctaaattatgatgtcctggcttactgcataatagaagctcttgctaatccagaaaaagag
aagatgaagcatgatgacaccactatttctagctggttgcagagtttagctagcttttgc
ggagcaattttccgaaaatatcctatagaactaggtggtcttctgcagtatgtggctaat
cagttgaaagctggcaaaagctttgatttactgattttgaaagaggtagtgcaaaagatg
gctggaatcgaaatcactgaggaaatgacaatggaacaactagaggcagtgactggtgga
gagcagctaaaagctgagggtggttattttggacaaataagaaacacaaagaaatcatct
cagagattaaaagattccttgctggagtatgaattggctcttcctttgtgtctgcttatg
gcccagcagaggaacggcgtagtattccaagaggggggagagaaacacttaaagctggtg
ggaaaactgtatgatcagtgtcatgatactctggtgcagtttggaggatttttggcttcc
aatttgagcacagaagattatatcaaaagagttccatccattgatgttctttgcaatgaa
ttccacacacctcatgatgctgctttcttcttatccaggcctatgtatgctcatcacatt
tcatctaaatatgatgagcttaaaaaggcagagaaaggaaacaagcagcagcacaaagtg
cacaagtatatcacatcgtgcgaactggtcatgtctcctgtgcatgaagccgtgatatct
ttgcacccacctaaagtgtgggaagacatcagccctcagttttactccaccttctggtcc
ctgaccatgtacgacctctctgtcccaagcaacagctacagcagagaaatcaacaaactg
aaaagccagatgagagccatagatgaaaacatggatatgcccccaaacaaaaagaaaaaa
gaaaaggagagatgcactgccctgcaagagaagcttgtggaggaggagaagaaacagtct
gaacacgtggctcgagttctacagaggatgaagctagaaaaagataactggcttttagcc
cgatccacaaaaaatgagacaatcaccaaatttttgcagctttgtatatttcctcgctgt
attttctcagccattgacgctgtgtactgcgctcggtttgtagaacttgttcaccttcag
aaaacaccaaacttttctaccctgctctgttatgatagagttttctcagacatcatttac
acggtggcaagttgtacagagaacgaggctagccgatatgggagatttctgtgctgtatg
ctggagaccgtaacaaaatggcatagtgatagaaatgtgtatgacaaggattgcggcagt
tatccaggctttgtaacaatactaagggcagccagctttgatagcggcaacaaagctgac
cagctggattatgagaatttccgtcatgtggtgcacaaatggcattataaattgacgaag
gcgtctgtccattgccttgagacaggggaatacacccacatcaggaatatccttattgtg
ctgactaagatcctgccatggtatcctaaggttctgaacttgggccaagctctggagcgc
agagtccacaaaatatgccaagatgagaaggaaaaaaggcctgatctctatgcgttggct
atgggctactctgggcagttgaaaagcaggaaaaatttcatggtgcctgaaaatgatttc
catcacaaagatccccctgtaaggagctccgtgccacccccagtacaaaatggaccaggc
actgttagccagtctgcttccatgttggtgaatgcagctaaaccagaagaaggcactact
gaggaaaccgacaaactcaaggaaaaagctcagagtgctctgaaagttgttactaaagct
gccagcacagcaccaaaggtgactgcaagcaatgggaacagcacttctgctagcaaagtg
cttaaagaaaaagaagacaaagataaaactgggaaagaaaaagagaaagacaaacgagag
aaaacaccagttgcacctcttgagaccaaggcaccaggaaaggaggcgaaagaaaaagta
aaggaagaccgtccgaataaagatgaaaagctgcgtgatgtcaaggagaagactcctaaa
gctgacaaagaaaaggagaaggccaagaaggaagaaaaatctcagaaggaagaaaaatct
aaggcaattatgatgagcaacgagtccaaaatctcttcagataaagagagagagagggag
ctctccagagagaaagaggcattgaaagaagcaaaaaccaaggagagttccaaatccgca
gagaaatcggctgtttctgggtccttgaagtctcctgttccccgtacagacatgcctgaa
actgagagggaacaaaaacgacgcaaaattgatacacattcttctccatcgcattcctca
gcagtaaaggacaacctcagtgaatttaaggactcttcaaccaagcactacacaaaccac
actaccccaacaatatccaaaaataaggagaaagaagtggagaagaaagagctggagaaa
tcacgagagaggtcgcgcgaaagagagaagaaagaggaaaaagaacggaaggaaaagaag
agggatcactcaaatggcgaccgtgaattgatgcaggaatcaaagcgccgcaaagaagaa
aacggaaccggcagttcctcgaaacacagtaagagcgaaagtccttctgactcccctcga
tccaatgagaaagagcgcaataaatcaaaatcatcaagtaaagagaaaggggatttcatg
aaatcagaaaaaatggaaaaaagcagttctggcagcaagaaggaatccagacatgacaag
gaaaagtctgagaaaaaagaaaaacgtgagagcacaggaggaaaggaggagaaaaagcac
cataaatcttcagacaagcacagataa
DBGET
integrated database retrieval system
