Xenopus laevis (African clawed frog): 108698394
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Entry
108698394 CDS
T01010
Symbol
col4a6.L
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04382
Cornified envelope formation
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04518
Integrin signaling
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108698394 (col4a6.L)
04518 Integrin signaling
108698394 (col4a6.L)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108698394 (col4a6.L)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108698394 (col4a6.L)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108698394 (col4a6.L)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108698394 (col4a6.L)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108698394 (col4a6.L)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108698394 (col4a6.L)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108698394 (col4a6.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108698394
NCBI-ProteinID:
XP_018085320
Xenbase:
XB-GENE-6487573
UniProt:
A0A1L8F7C9
A0A974C6E3
LinkDB
All DBs
Position
8L:complement(42086839..42223266)
Genome browser
AA seq
1710 aa
AA seq
DB search
MVTRLCLLVAAACFAAQLVQGGGKKFYQGPCAGRDCSGGCKCFPEKGARGRPGQLGPQGP
MGPPGFSGPEGVAGPKGERGDHGSQGGAGPKGDKGSVGVPGFDGNDGIPGHVGQGGHRGL
PGLDGCNGTIGDSGFPGANGLPGGPGFPGRTGPKGQKGEPSFFQGDIKGPKGEDGLPGRN
GLPGPRGPNGAEGITGPAGFPGFPGPPGPPGLPGPTGNRGVGYYGEKGHKGDVGPPGPPG
PRASTGPVEFTEPAKGIQGDKGDRGFPGVRGESGFPGLPGFGFSGEKGEKGIPGLPGPRG
FPGLDGSNGYPGRKGQPGLPGFDGLDGFKGIKGEEGDIGLPGTPIYIDEEGSAVTGPPGD
AGSPGFPGSPGDEGISGAPGLPGQPGLPSFVRGNTGQSGFPGIQGPKGEQGNPGKPGFGP
PGIPGRVGQPGPPGLPGQDGPPGESAGFQTALGEPGLPGGQGNRGPPGQIGPKGYKGADG
DCACEGGDLSKGSPGSPGLPGRRGSPGFSGLNGITGDPGRRGYDGPPGPPGSPGSVGFPG
LKGEKGDPVYSTGRGSRGDPGSVGPRGAPGAEGKPGRDGRPGLPGLKGAPGTGGSGVPGE
KGFPGLPGPKGSRGGTGPPGIGYPGSPGSRGLPGDPGQAGLPGQPGLAGPPGDCCCGANV
GNGDLVTVGGTTLPCVIAGEPGLPGVNGPPGFPGLKGNKGFPGIPGQRGFDGAKGQPGNP
GFGGFPGPPGFPGPRGEEGAPGFPGLPGGEGFPGMNGIPGAPGQKGLRGEVLGATPGSPG
EPGLPGIIGDKGLPGDAGFSGQRGFDGRPGLMGAKGERGNAGFPGSPGPKGQPGFGGLLG
IKGKQGPPGDIGYSGSPGCQGFPGIKGLPGDRGIPGIAGTKGRPGALGDAGRPGEIGLPG
LPGSGGRDGLPGFQGLKGEKGSPGVRGFTGMPGIPGLPGVNGYKGICGSPGRDGQKGNDG
FKGEKGLTGDIGIPGPVILPPPELRAKGTQGEPGPSGPPGFTGPRGDKGFPGLPGTQGSP
GFPGSPGRDKGLPGGPGLPGAFGRPGFPGSKGEPGIVGFPGMPGPNGAEGIPGVSGFPGS
PGLPGPKGERGETLGQPGRPGVKGETGIPGVSGQRGFDGIPGDVGSIGITGNPGQKGPSG
ELGRIGQPGNPGYLGYRGNPGLVGSPGLPGPPGFSGTPGAAGPKGFSGPPGIRGLNGLAG
SKGTPGTPGLSEAGRPGSPGFPGPKGERGSPNTIPGQPGFPGSKGFPGQTGLPGAVGLPG
LPGPPGFSFPSSVPGRPGDPGPPGRDGEAGLPGLPGPRGPPGPGSNQGDTGDAGYPGIPG
RPGIKGEPGIPGNSGSPGAPGLKGLRGDPGFIGSPGKEGSVGDAGFPGPKGERGNPGLPG
PRGRPGPPPSIEDYQIPIGLPGLPGINGFDGVAGEIGQQGSNGPAGGKGFPGRSGQIGRN
GPPGAPGPIGDPGEPGIPGSPGFEGSPGKQGAVGLPGMAGRSVGVGYTLVKHSQSEQVPP
CPLGMARLWDGYSLLFVEGQEKAHNQDLGLAGSCLPRFSTMPFIYCNINEVCYYASRNDK
SYWLSTTAPIPMMPVANTEIKDYISRCSVCEAPSQAVAVHSQDNTIPQCPNGWRSLWIGY
SFLMHTAAGAEGGGQSLVSPGSCLEDFRATPFIECSGARGTCHYFANKYSFWLTTVEETR
QFARPPTSETLKSGQLRTRVSRCQVCMKNL
NT seq
5133 nt
NT seq
+upstream
nt +downstream
nt
atggtgacacgactttgcctgctggtagctgctgcctgcttcgctgcacaactggtgcaa
gggggaggaaaaaagttctatcaggggccatgtgccggacgagattgtagtgggggctgc
aaatgttttccagaaaaaggagctcggggtcgaccagggcaacttgggccccagggtcca
atggggccaccaggattttcaggacctgagggagtagcagggccaaaaggtgaaagaggt
gatcatggatctcaaggaggagctgggcctaaaggagataagggctcagtgggagttcca
ggctttgatgggaatgatggaatacctggtcatgttggacagggaggccatagagggtta
cctggacttgatggctgtaatggcaccataggcgattcaggctttcctggtgctaatggc
ttacctgggggacctggatttccaggtcgtactggtccaaaaggtcagaaaggtgaacct
tctttttttcaaggtgatataaaaggacctaagggagaagatggactgcctggacgaaat
ggattacctgggccacgtgggcctaatggagcagagggtataactggtccagccggattc
cctggcttcccgggtcctccgggtccacctggattgcctggtcctacaggaaaccgcggt
gttggctattatggagagaaagggcataagggagatgttggacctcctggtcccccaggg
ccaagagcatctactgggccagtggagtttactgagccagcaaagggaattcaaggagac
aagggtgatagaggctttccaggggtgcgaggggagtcgggatttcctggccttccggga
tttggtttcagtggagagaagggtgaaaaaggaatacctggccttcctggcccaagaggt
tttccaggactggatggatccaatggctatcccggcaggaaggggcagccggggttacct
ggttttgatggacttgatggtttcaaaggaattaagggtgaagaaggagacattggccta
cctgggactccaatatacatagacgaggaaggctcagccgtcacaggcccaccaggagat
gcaggttctcctggattccctgggagtccaggagatgagggtattagtggggcaccaggc
cttcccggtcaacctggtttaccgtcatttgttagaggcaatactggacaatctggtttt
ccaggtattcaaggtcctaaaggggagcaaggcaacccaggaaaaccaggttttgggcca
cctggaattccagggagagttggccaaccaggacctcctggtctaccaggacaagatgga
ccccctggtgaaagtgctggattccaaacagctttaggcgaaccaggtttaccaggaggc
caaggaaacagagggcccccaggacaaatcggacctaaaggatataaaggagctgacgga
gactgtgcttgtgaaggaggcgatcttagcaaaggaagtcctggatcaccaggtctacct
ggtcgaagaggaagtcctggtttttctggcctaaatggaataacaggtgatcctggaaga
agaggctacgatggaccacctggtccaccaggttctcctggctcagttgggtttcctgga
ctaaaaggagagaagggagatccagtgtattcaactggtagaggttctcgtggtgaccct
gggtctgtaggccccaggggtgcacctggtgctgaaggaaaacctggaagagatggtcgt
ccaggattacctggcctaaaaggagctcctggcactggcggctctggtgttcctggtgag
aagggattcccaggcttgcctgggccaaaggggagccgtgggggaacaggacctccaggt
attggttacccaggttctcctggatctcgtggtcttcctggtgacccaggacaagcagga
ttaccaggacaaccaggtctggcaggaccaccaggtgactgctgctgcggggccaatgtt
ggtaatggagacttagtcacagtgggaggaacaacattgccctgtgttattgctggagaa
ccaggccttccgggagtcaatggtccaccaggatttccaggtcttaaaggtaataaggga
tttccaggaattccaggacaacgggggtttgatggtgctaaaggtcaaccaggcaatcca
ggttttggtggatttccggggcctcctggatttcctggacctcgtggagaagaaggtgct
ccagggttccctggattaccaggtggcgaaggatttcctggaatgaatgggatcccaggg
gccccaggtcaaaaaggattgcgaggagaagtattgggggcaacacctggatctcctggt
gagccaggcctaccaggaatcattggagacaaaggcttgccaggagatgctggtttctca
ggacagagaggttttgatggaaggcctggacttatgggtgctaaaggagaacggggtaat
gctggttttcctggcagtccaggtcccaaaggtcagcctggctttggaggattattgggg
attaaaggaaaacagggtcctcctggagatattggatactctggatcaccaggctgccaa
ggttttcctggaattaagggtttacctggagatagaggcattcctggcatagctgggacg
aagggacgcccaggagctctaggggatgcaggacgtcctggtgaaataggtctccctggg
ctacctggatcaggtggccgagatggtcttccagggttccaagggcttaaaggtgagaaa
ggctctcctggtgtgaggggattcactggaatgcctggtatcccagggcttcctggagtc
aatggatataaaggaatttgtggctcacctggaagagatggacaaaaaggaaatgatggc
tttaagggagaaaaaggtttaactggtgatattggtataccaggtcctgtcatactacca
cctcctgaacttcgtgctaaagggactcagggagaaccaggaccaagtggccctcctgga
tttacaggacctagaggtgataaaggatttcctggacttccaggaacacaggggagccct
ggctttccaggcagcccaggcagagataaaggtttacctggtggccctggattgcctgga
gcatttggaagaccaggatttcctggttcaaaaggagaacctggaatagttggatttcct
ggaatgcctgggccaaatggtgctgagggtatccctggagtttctggttttcctggcagt
cctggactaccaggaccgaaaggagaaagaggagagactttaggacaacctggacgtcca
ggagttaaaggagagactggtataccaggagtttcaggtcaaagaggttttgatggcatt
ccaggagatgttgggtcaataggaatcacaggaaatcctggacaaaagggtccttcagga
gagcttggacggataggacaaccaggaaatccaggatatctgggatatagaggcaaccct
ggattagtgggtagtcctggattaccaggacctccaggattttcaggaaccccaggggca
gcaggtcctaaaggtttttctgggcctcctggtatccgtggcttaaacggcttggctgga
agtaaggggacccctggaacaccagggcttagtgaggctggacggccaggatccccagga
tttccaggaccaaaaggtgaaagaggttctcccaacactatcccgggacaaccaggattt
cctggatctaaaggatttcccggacaaacaggtcttcctggtgccgttggcttacctggt
cttcctggaccacccggcttctcatttccctcctctgtcccagggagacccggtgaccct
ggccctcctggacgagatggagaagcaggacttcctggcctgccaggaccacgtggccct
cctggcccaggatcaaatcaaggggatacaggagacgcaggatatccaggcattcctggc
agacctggcataaagggtgaacctggaataccaggaaactcaggaagccctggagctcct
ggacttaaaggcctgagaggtgatccaggcttcattggtagcccaggcaaggaaggttct
gtaggagatgctggctttccaggaccaaagggagaaaggggcaacccaggactccctggt
cctcgaggacggcctggcccacccccatcaatagaggattaccagattcctattggatta
ccaggtctgcctggaattaatggttttgatggtgttgccggggaaattggacaacaagga
tcaaatggaccagcaggaggtaaaggattcccgggcagatctgggcaaataggaagaaat
ggcccgcctggtgctcctggtcctattggtgatcctggtgaacctggtattcctggatct
cctggttttgaaggttctcctggtaagcagggtgcagtgggcttacctggaatggcagga
cggagtgtgggtgttggatacacattagtcaagcacagccagtctgaacaggttcctcca
tgtccgcttggaatggccaggctgtgggatggctatagcttgctgtttgtggaaggacaa
gaaaaggctcacaatcaagacttgggtcttgctggttcctgtttgcctcggttcagcacc
atgccgtttatttactgcaacattaacgaggtttgctactatgctagcaggaatgacaaa
tcttattggctctctaccacggctcctatccccatgatgcccgtggctaacaccgagatt
aaagattacattagccgctgctcagtttgtgaggctccttcccaggctgttgctgttcat
agccaggataacacaatcccacaatgccccaatggatggaggagcctctggattggatac
tcttttctcatgcacacagctgcaggtgctgaaggtggtggtcaatccttggtatctcca
ggttcctgccttgaagatttccgggccactccatttattgaatgcagcggagcaagagga
acctgccattactttgccaacaagtacagcttctggttgaccactgtggaagaaacacgg
cagtttgctagaccgcccacttctgaaacgctgaaatcgggccagttgagaacacgcgtg
agccgttgccaggtgtgcatgaagaacttgtag
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