Xenopus laevis (African clawed frog): 108698398
Help
Entry
108698398 CDS
T01010
Symbol
fip1l1.L
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1 isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108698398 (fip1l1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108698398 (fip1l1.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108698398 (fip1l1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fip1
Motif
Other DBs
NCBI-GeneID:
108698398
NCBI-ProteinID:
XP_018085335
Xenbase:
XB-GENE-17335724
UniProt:
A0A8J0TGS8
LinkDB
All DBs
Position
1L:41365532..41425879
Genome browser
AA seq
602 aa
AA seq
DB search
MSASGELVERMVVSSGTSGSTAPALSSPATSTVTTAVSASPGAADGGGGGDEEEEWLYGE
ENEAAAADDDEEDITSSQPVPEIEAETTENGVVKTVTETEDDSESDSDDDDDDVHVTIGD
IKTGAPQYVPYGTTPVNLNIKTGGRIYGPTGKGKGVDLDAPGSINGVPLLEVDLDSFEDK
PWRKPGADLSDYFNYGFNEDTWKAYCEKQKRLRMGLDALPLSSITNKITVQQGRTGNTEK
DTILQSVKSEFSSPTSLFKPGIPPPSRKTSSAIDVIGQTTTITRVEGRRRGANESNIQVV
SEQSPSEVDNNFIKPPPPFFPPGAPPTHLPPPPLFPPPPNVSTAPPLIPPPGSISFSMQK
PSRYGIPITVPPPEKTGKKVSVRKMSPKRSFPPPPGGPPPSLIPTIESGHSSGYDGRSAP
AFPYGSVSFPHMPGSAGPWSSLVDTSKPWDYYPRREKDRDRDRERDRERDRDRDRERVRE
RERDRERERDHSPSAGAYNSEEERYRYKEYNERTERSYERHRERISREKEERHRERRHRE
KEKEESSRHKSSRSSSRRRHESEEGDSHRRHKHKKSKRSKEGKDAGTEAVQESESVESTN
AD
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtctgctagcggagagctggttgagcggatggtggtttcgtcagggacaagcggcagt
accgcccctgctctctcctcacccgccacctccacagtcactaccgctgtcagtgcctcg
cccggggcagcggatggaggaggcggtggtgatgaggaagaggaatggctgtacggggaa
gaaaatgaagctgcagcagcagatgatgacgaagaagacataacaagctctcaacctgta
cctgaaatcgaagcagagactactgagaatggtgttgtgaaaacggtgactgagacagaa
gatgacagtgaaagtgacagcgacgatgatgatgatgatgtccatgttaccataggagat
attaaaactggagctcctcagtatgtgccatatggaacaacccctgttaatttaaatatt
aaaactgggggaagaatatatggaccaacaggaaaaggtaaaggggttgatttggatgcc
ccaggaagtattaatggcgtgcctctgttggaagtagacttggactcttttgaggacaaa
ccttggcgaaaaccaggtgctgatctgtcagattattttaattatggttttaatgaagat
acatggaaagcttactgtgaaaaacaaaagaggctaaggatgggcttggacgcacttcca
ctttcttctataacaaataaaataacggtacagcagggcagaacaggcaatacagaaaag
gataccattttgcagagtgtcaaatcagagttttcgtctcccacttcattattcaaacct
ggaattcctcctccaagtcgaaaaacctcaagcgcaattgatgtgattggtcagacaacc
actatcactcgtgtagaaggacggcggcgaggtgcaaatgaaagcaatatccaggtagtt
tccgaacagtctccttctgaagtggataataattttatcaagccacccccaccatttttc
cctcctggagcaccccctacacatcttccaccacctcccctttttcctccaccaccaaat
gtcagtactgccccacctttaatcccaccacctggatcaatatcgttctcgatgcaaaaa
ccatctcgatacggaattcctatcactgtgccacctccagagaagacaggaaagaaagtg
agtgtgagaaaaatgagcccgaaacgcagtttccctcctcctcctggaggcccaccacca
tctctcatcccaacaatagaaagtggtcactcttctggctatgatgggcgatcagctcct
gcatttccttatggcagtgtgtcttttcctcacatgcctggttctgctggtccatggtcc
agtctggtagatacctccaaaccgtgggactactatcccaggagagagaaggacagagac
cgtgacagggaacgagatcgagaacgggacagagatcgagatcgcgagcgagtccgtgag
agggaacgggacagagaacgagagcgagatcacagtccaagcgcaggcgcatataatagt
gaggaagagcgatacagatacaaggagtataacgagcgaacagaaaggagctacgagcgt
cacagagaaagaatcagcagagaaaaggaggaaagacacagggaaaggagacatcgggag
aaggagaaagaggagtcgtcccgtcacaaatcatcccgaagcagcagcaggcgccgccac
gagagcgaagagggcgacagtcacagaagacacaaacacaaaaagtccaaaagaagcaaa
gaaggcaaagatgcagggaccgaagccgtgcaggaatccgaaagtgttgaatccaccaat
gccgattag
DBGET
integrated database retrieval system
