Xenopus laevis (African clawed frog): 108698517
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Entry
108698517 CDS
T01010
Symbol
ercc2.L
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD isoform X1
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03022
Basal transcription factors
xla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108698517 (ercc2.L)
09124 Replication and repair
03420 Nucleotide excision repair
108698517 (ercc2.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108698517 (ercc2.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108698517 (ercc2.L)
03400 DNA repair and recombination proteins [BR:
xla03400
]
108698517 (ercc2.L)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
108698517 (ercc2.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
108698517 (ercc2.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108698517 (ercc2.L)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
108698517 (ercc2.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
DEAD
ResIII
SNF2-rel_dom
MtaB
Motif
Other DBs
NCBI-GeneID:
108698517
NCBI-ProteinID:
XP_018085549
Xenbase:
XB-GENE-6486806
UniProt:
A0A8J0TIY0
LinkDB
All DBs
Position
8L:62748799..62771169
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNIDGLLVYFPYEYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLSLIVAYQ
RAYPLEVTKLIYCSRTVPEIEKVVEELRKLIEYTQTQTGETLNFLALALSSRRNLCVNPE
VSALRFGKEIDGRCHSLTASFVRSQRQRDPTVPSCRFYEEFDAIGRETPLPPGTYNLDDL
RTVGRQKGWCPYYLARHALGQCNVVVYSYHYLLDPKIADLVSRELAKKSVVVFDEAHNID
NVCIDSMSVTITRRTLERSQTNIETLNTAIQKMKDLDEKKLKEEYARLVEGLREASVARE
TDVYLSNPVLPDEILQEAVPGCIRNALHFLGFLRRLVGYIKSRLRAGHVTQEGPVAFLRD
LFEKVCIERKPMRFCAERLRSLTRTLEIADITDLSPLVLITNFATLVSTYTKGFMIIIEP
FEDRTPSISNPVLHFSCLDSSLAIKPVFQRFQSVIITSGTLSPLDIYPKILDFRPVTMAT
FTMTLARVCLCPMVVGRGNDQVAMSSKFETREDLAVMRNYGNLLLEMSAVVPDGIVGFFT
SYLYMENIVASWYEQGILENIQRNKLIFIETQDGAETSVALEKYQEACENGRGAILLSVA
RGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLQFLRDQFHLRENDFLTFDAMRHA
AQCVGRAIRGKTDYGIMLFADKRYARSDKRGKLPLWIQEHLTDANLNLTLDESVHLARHF
LRQMAQPFRREDQLGLSLLTLEQLQSEEMLQKIQEIAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgaatatagatgggttactggtatactttccctatgagtacatatatccagaa
cagtactcctacatgttggagctcaagaggaccctggatgccaagggtcatggtgttctg
gagatgccttcaggaactgggaaaactgtttctctgctgtcgctcattgtggcctaccaa
agggcatacccattagaagtcaccaagttaatatactgttccagaactgttcctgaaata
gagaaggttgtggaggagttaagaaagctaattgaatacactcaaacacagactggagag
acactcaattttttggctctggccctgagctccagacgtaatctttgtgttaatccagag
gtcagtgctttgcgttttgggaaagagatagatggtcgttgtcacagtttgacagcttcc
tttgttcgttcccagagacagagagacccaactgtaccaagctgtcggttttatgaggaa
tttgatgccattggacgtgagacccctcttcctcctggtacctacaatctggatgacctt
aggactgtggggagacaaaaaggctggtgtccttattaccttgcccgacatgctctggga
cagtgcaatgtagttgtgtacagttatcactacttactggaccccaaaatagctgacctt
gtctctcgtgaacttgcgaagaaatctgttgttgtctttgatgaagctcataatattgat
aatgtctgtattgactctatgagtgtcaccatcacacgtcgaaccctggaacgcagtcag
acaaacattgaaacgctcaacactgcaatacaaaaaatgaaagatttagatgaaaagaag
ctgaaggaggagtacgctcgactggtggagggattgcgagaggccagtgttgcaagggaa
actgatgtgtacctgtccaaccctgtcttacctgatgaaattctgcaagaggcggtgcca
ggatgcatccgaaatgctcttcatttcctgggttttctgcggcgattggtgggctacatc
aaatctcgtctacgtgcaggccatgtaacacaagagggtcctgtcgccttcctacgtgac
ctttttgagaaagtctgcattgaaaggaagccaatgcgtttctgtgcagaacggttgcgt
tccctcacacgcactcttgagattgcagacattacagacctctccccccttgtcctcata
accaactttgctacccttgtcagcacatatactaaaggttttatgatcatcattgaacca
ttcgaggacagaactccatctataagtaatcctgtgctgcactttagctgcctagattct
tcccttgctattaaacctgtattccaaaggtttcagtctgtcatcatcacttctgggacc
ctctctcccttggatatctaccccaaaattttggattttcgccctgttactatggcaacg
tttacaatgaccttggcccgcgtttgtctttgtcctatggttgtgggccgtgggaatgat
caagtggcaatgagttcaaagtttgaaacaagggaagatctcgctgtgatgaggaattat
gggaaccttctgcttgaaatgtctgctgtggtcccagatggaatagtaggattttttacc
agttacctatatatggagaacattgtggcttcatggtatgaacagggaatattggaaaac
attcagaggaacaaattgatctttattgagacacaagatggagcagagaccagcgttgcc
ttagaaaaatatcaagaggcttgtgaaaatggaagaggagctatcctgttatctgttgca
cgaggaaaagtatctgagggcattgattttgtgcatcactatggccgagctgtaataatg
tttggggttccatatgtatatacacaaagccgcatactgaaggctcgtcttcagttcctg
cgggatcagttccatttacgtgagaatgattttttgacatttgatgctatgagacatgca
gctcagtgtgtaggacgtgctatacgtggtaaaactgactatggaataatgctctttgct
gataagcggtatgcacgctctgataagagaggaaagctgccactctggattcaagaacat
cttacagacgcaaacttaaaccttacactggatgaaagtgtccatctagcccgacacttc
cttagacaaatggctcaaccattccgcagggaggaccagctgggactgtctcttcttact
cttgagcagttgcaatctgaagagatgctacagaagatacaagagattgctcatcaggtg
tga
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