Xenopus laevis (African clawed frog): 108698734
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Entry
108698734 CDS
T01010
Symbol
dicer1.L
Name
(RefSeq) endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108698734 (dicer1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108698734 (dicer1.L)
microRNA pathway
RISC loading complex
108698734 (dicer1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Dicer_dimer
Ribonucleas_3_3
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
Motif
Other DBs
NCBI-GeneID:
108698734
NCBI-ProteinID:
XP_018085949
Xenbase:
XB-GENE-17331064
UniProt:
A0A1L8F9L1
A0A974H8H3
LinkDB
All DBs
Position
8L:complement(79467703..79513409)
Genome browser
AA seq
1891 aa
AA seq
DB search
MAGLQLMTPASSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALDHNTIVCLNSGSGK
TFIAVLLSKELSYQIRGDFSKNAKRTVFLVNSEKQVSQQVSAVRTHTDLKVGEYSDLQKT
QCWAKEKWYQEFETRQVLVMTCHIFLNVLKSGNVSLSNINLLVFDECHLAIQDHPYREIM
KICESCQPCPRILGLTASILNGKCDPRDLEEKIQKLEKILRSNAETATDLVVLDRYASQP
CEIVLDCGPYVDRSGLFQRLLNELDEALNFLIDCNISTHSKERDSTIISKQILSDCRAVL
LVLGPWCADKVAGMMVRELQKYIKHEQEELHRKFLLFTDTILRKIHALCEEHFSPASLDM
KFVTPKVIKLLEILRKYKPYERQQFESVEWYNNRNQDNYVSWSDSEDDDDDEDEEIEEKE
KTETSFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQ
PRNKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQ
SKGRARAPISNYIMLADSDKIKTFEEDLKTYKAIEKILRNKCSKSIDCGNTESEPVVDDD
EIFPPYVLRQDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTREMSDGPYRSTLY
LPINSPLRAPIVGPPMNCARLAERAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDL
HDEEETSVPGRPGSTKRRQCYPKAIPECLRNSYPKPGQPCYLYVIGMVLTTPLPDELNFR
RRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLNLEQLELITR
LHQYIFSHILRLEKPALEFKPTVADCAYCVLPLNVVNDSGTLDIDFKFVEDIEKSEARTG
IPNTQYSAESPFIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETF
AEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQ
NKQILVPELCAIHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVKSLPED
FRYPNLDFGWKRSIDSKTFISSQSSSAVESEGDCRLNTTMVPDSATSSAANHVIYTQTND
QMSVNCTPLCQKSLSDLRGVCFSEDYKAINGVSCNGVTSDSEAESGVCFQKDERIACTQE
IPEKSTSFHIQNLPKENQPILNECTLSKKFLDGNVSKPTSDECPSTCTSDMQYESGLSNG
YSSKTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLS
YMRSKKVSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKSSDKWESNETSGE
GVMANGKIDEDFDDDDEEDEDLMWRNPKEETDFDDDFLEYDQEHIKFIDSMLMGSGAFVK
KIPLSSFAPPDQNYEWRAPKKPLLESAQFPSEFDDFDYSSWDAMCYLDPSKAVEEDDFVV
GFWNPSEENCGTDVGKQSISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCS
LGLKVLPQVRRSVTSTNSISASSSYQKTSTRDICTLNSELSSCKGVEYGYLKIPPRCMFE
HPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAI
LDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDD
FVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVW
RVYYPMMHPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVEVVGKGKFK
GVGRSYRIAKSAAARRALRSLKANQSQVPNS
NT seq
5676 nt
NT seq
+upstream
nt +downstream
nt
atggcaggacttcagctcatgactccagcctcctctccaatgggtcccttttttgggctg
ccctggcaacaggaggctattcatgacaacatttataccccacggaaatatcaggtggaa
ctactcgaagcagcattggatcataataccatagtatgtttgaattctggctcagggaag
acatttattgcagtactactcagtaaagagctgtcataccagatccgtggggacttcagc
aaaaatgccaagaggactgtgtttctggtcaattccgagaaacaggtttctcaacaagtg
tctgctgtcaggacccatacagacctcaaggtgggggaatattcagatctacaaaaaaca
caatgctgggcaaaagaaaaatggtaccaggaatttgaaactcgtcaggtcttggtcatg
acctgccacatcttcctgaacgttctgaaaagtgggaatgtgtcattgtcaaacattaat
ctgttggtgtttgacgaatgtcatcttgcaattcaagatcacccatatcgagaaatcatg
aagatatgtgagagttgccagccgtgccctcggatcctgggtctaactgcttcaatatta
aatggaaaatgtgaccctcgtgacctagaggaaaagatccagaaactagagaaaatatta
aggagtaatgcagaaactgcaactgatttggttgttttagacaggtatgcttcccagcca
tgtgaaattgtgttggactgtgggccatacgttgacagaagtggactgtttcaaagactt
ttaaatgaattagatgaagcacttaactttctcattgactgtaatatttccacacattct
aaagagagagattccacaataatttcaaaacagattctgtcagactgtcgggctgttctg
ttagtcttgggaccatggtgtgctgataaagttgcggggatgatggtgagagagctgcag
aagtatatcaaacatgagcaggaagaactgcacagaaaattccttttgtttacagacact
atcttaaggaagatccatgctctttgtgaggaacacttctcaccagcctctcttgatatg
aaatttgtcacgcctaaagttataaaacttctggaaatcttgcgcaaatataaaccctat
gaacggcagcaatttgaaagtgttgaatggtataacaatagaaatcaggataactatgtg
tcttggagtgattctgaagatgatgatgatgacgaagatgaagaaattgaggagaaagaa
aaaacggaaacaagttttccatccccattcacaaacattctgtgtggcatcatcttcgtg
gaacgtagatacacagccgtagtattaaacaggttaattaaagaagccgggaagcaagat
ccagagctggcctatatcagtagcaactttattacaggacacggcataggaaagaaccag
ccacgcaataagcagatggaagttgagttcagaaagcaggaagaggttcttcgtaaattt
cgtgcacacgaaaccaacttgttgatagctacaagcattgttgaggaaggagtggacata
ccaaaatgcaacttggtggttcgatttgatttaccttcagagtacagatcctatgttcaa
tccaaaggcagagccagagcaccaatctcaaattacatcatgctagctgatagtgataaa
ataaagacatttgaagaggaccttaaaacatacaaagcaatcgaaaagattttgcggaac
aaatgctcaaaatccattgattgtggaaatacggaatctgagcccgttgtggatgatgat
gaaatatttccaccttacgtattgagacaggatgatggcagcccacgagttacaatcaac
acagctattggacatatcaacaggtactgtgctaggctacctagtgacccatttactcat
cttgctcctaagtgcaaaacacgagagatgtctgatggaccttatcgctcaactctctac
ctgccaattaattctccacttagagcccccattgttggccctccgatgaactgtgcaagg
ctagctgagagagctgtagctcttatatgctgtaagaaactacatgaaattggcgaactg
gacgaccatttaatgcctgttggcaaggaaactgtaaaatatgaggaggagcttgatttg
catgatgaggaagaaaccagtgttccaggcagacctggatccacaaaaagaaggcagtgc
tatccaaaagctatccctgaatgtttacggaacagctaccccaagcccggtcagccttgt
tacttgtatgtcataggaatggtattaaccactcctctaccagatgaacttaattttagg
agacggaaactgtatccccctgaagacacaacaagatgttttggaatactgactgccaaa
cccatacctcagattcctcactttcctgtctatactcgctcaggagaggtgaccatatca
attgaactgaagaagtctggttttacattaaacttagaacaacttgagctcattactaga
ctccaccagtacattttttcacatattcttcgtcttgagaaacctgcactagaatttaaa
cccacagtagccgattgtgcttactgtgttctacctcttaatgttgtaaatgattctggc
actttggacattgatttcaaatttgtagaagatattgagaaatcagaagcacgtactggt
atacctaatacacagtattcagctgaaagtccttttattttcaaattagaagactaccag
gatgcagttatcattccaagatatcgaaattttgaccagccacacagattttatgtagct
gatgtatacactgatcttacaccactcagcaagtttccttcccctgaatatgaaacattt
gctgaatattacaaaacaaagtataacctcgatctcacaaacctcaatcagccacttttg
gatgtggaccacacatcgtcaagacttaatttgctgactcctcgccatctgaatcagaag
gggaaagctctccctctaagcagtgctgaaaagagaaaagccaaatgggagagtttacaa
aacaaacagatcctggttccagagctttgtgctatacatccagtcccagcatccttatgg
agaaaagcggtttgcttgccaagcatactttatcgattgcattgccttcttacagcagaa
gaactgagagcccaaaccgctattgatgctggagtaggggtcaaatctcttcctgaagac
ttccgatacccaaatttggattttggatggaaaaggtctatagacagtaaaacattcatc
tctagtcaaagctcctcagctgtcgaaagtgaaggtgactgcagactcaatacaaccatg
gtccctgacagtgctacaagttcagctgctaatcatgtaatctacacgcaaactaatgac
caaatgtctgtgaactgcacaccgctatgtcagaaatctctgagtgacctccgaggggtt
tgcttctctgaggattacaaagcaattaatggtgtttcttgcaatggtgttaccagtgat
tcggaagcagaaagtggtgtgtgtttccagaaggatgaacgaattgcctgcacgcaggaa
atacctgaaaaatctacctcgtttcacattcagaatttacctaaggagaaccagcccata
cttaatgaatgtactctgagcaaaaagtttcttgatggaaatgtcagcaaacctacctca
gatgagtgccccagcacctgtacttcagacatgcaatatgaaagtgggctttccaatggg
tactcttcaaaaactcttggccccaaccctggtcttatccttcaggccttgactctgtcc
aatgcaagtgatggtttcaatctggagcgtcttgaaatgcttggtgactcattcttgaaa
catgccattaccacatatctgttctgcacataccctgatgctcatgagggtcgtctgtcc
tatatgcgcagcaagaaggtcagtaactgtaacctttatcggcttggaaaaaagaaaggc
tcacccagccggatggtggtgtccattttcgatccacctgttaactggcttccccctggt
tatattgttaaccaggacaagagttctgataagtgggaaagtaatgaaacgtctggtgag
ggtgtgatggctaatggcaaaattgatgaagactttgatgatgatgatgaagaagatgaa
gatcttatgtggaggaatccaaaagaggaaaccgattttgatgatgactttctagaatat
gatcaagagcatataaaattcattgacagcatgttaatgggatctggggcatttgtgaag
aaaatacctctgtcttcatttgcacccccagaccagaattatgaatggagggcaccaaag
aaacctctactggaaagtgctcagtttccttctgaatttgatgattttgattacagttct
tgggatgccatgtgttatttggatcccagcaaggctgtagaggaggatgactttgtagta
ggcttttggaatccatcggaagagaactgtggaactgatgttggaaagcagtccatttcg
tatgacctacacacagagcagtgtattgcagacaaaagtattgctgactgtgtagaggct
ttattaggctgctatctgaccagttgtggtgagagagctgcgcaactgtttctttgttct
ttgggcttaaaagtgctcccacaagtaagaaggtctgttactagcacaaattccattagt
gcatcatcatcttaccagaaaacaagcaccagagacatctgcactcttaactctgagctg
tcttcttgcaaaggcgtggaatacggttatttaaagatccctccgaggtgtatgtttgag
cacccagatgctgaaaaaacccttgaccatctaatatctggttttgagaactttgagaag
aaaataaactatccatttaaaaacaaggcctaccttctacaggcttttacacatgcctct
taccactacaatactataactgattgctaccagcgtttagaatttcttggagatgcaatt
ttggactacctcattactaagcacctttatgaagacccacgccagcactcaccaggagtc
ctcactgacctgcgttctgctcttgtgaataacaccatatttgcatctctagctgtgaaa
tatgactaccataaatacttcaaggccatctctcctgaactgttccatgtaattgatgat
tttgtgcaatttcagcttgaaaaaaatgaaatgcaagggatggattctgagttacgtagg
tctgaagaagacgaagagaaagaagaggatattgaagtcccaaaagcaatgggagacata
tttgagtcacttgcgggagctatttatatggacagcggcatgtcgttggaaactgtatgg
cgtgtgtactatcctatgatgcatccactaattgaaaaattctctgctaatgttcctcgt
tccccagtgagagaattgctggaaatggagcctgaaactgctaaattcagtccggctgaa
agaacatacgatggaaaagtcagagtgacagtggaagttgttggaaaaggaaaatttaaa
ggagttggaagaagttacagaattgccaaatctgcagcagccaggagagcactaagaagc
ctcaaagcaaatcaatctcaggtccccaacagctga
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integrated database retrieval system
