Xenopus laevis (African clawed frog): 108699958 Help Entry 108699958         CDS       T01010                                  Symbol nup188.S Name (RefSeq) nucleoporin NUP188   KO K14311   nuclear pore complex protein Nup188 Organism xla  Xenopus laevis (African clawed frog) Pathway xla03013   Nucleocytoplasmic transport Brite KEGG Orthology (KO) [BR:xla00001]  09120 Genetic Information Processing   09122 Translation    03013 Nucleocytoplasmic transport     108699958 (nup188.S)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:xla03019]     108699958 (nup188.S) Messenger RNA biogenesis [BR:xla03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Nuclear pore complex      108699958 (nup188.S) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Nup188_N-subdom_III Nup188_N Nup188_SH3-like Motif Other DBs NCBI-GeneID:  108699958 NCBI-ProteinID:  XP_018088199 Xenbase:  XB-GENE-6485603 UniProt:  A0A1L8F1N1 A0A974C2N7 Structure PDBPDBj LinkDB All DBs Position 8S:34463223..34492779 Genome browser AA seq 1739 aa AA seqDB search MAAAGSLYWRTSRELWTILLGRSSMKDGYQIKAELDRYGDRLLQGLAYYKPPSTRSADKV KANKNLSPALQELGLRLSKFLALDEEQSVELLQTYLQYDYRGTQESVKVLPQDERQSQAL MLKMADYYYEERISLLRCVLYILNYFQDDKHPYSAEFSKCVELMEQKELFGKYLKQFESL CREEAPTWETHGNFMTERQVSRWFVQRLREQAMLLEIIFLYFACFAASPSDLLALTKLFK EQGFGCRLQNHHLVEPSMDPLVERIGYFSILIFLEALDMDTLMTCSLSDKIEQHPFSSEE QVCKEMDSILVTLGDVPHHGPVLLAWALLRFTLNPDKVTSAVRKMGSTAIQLHLFQYLTR MLQSLRSGENNCTTSTACLCVYTFLAYVLSTLEEQVSQSQQDLVETACQVFAAPNLPDLF WNMEPTAGLGILLDSVVGMFPFRISPLLKLFTALVSKSSAKKVYSFLDRMSSYTEHYRHK PHDILSHDDETLWKRQTPKLLYALGLGQTNLRIPQGALGQVMADENGFLVRWEYSYSCWT LFTCEIEMLLHVVSTADVIHQCQRVKPIIDLVHKVISTDLSIADCLLPITSRIYMLLQRL TTVMNPPMDFLSSCVDCLTALATRLPAKVWTDLRHTGFLPFAANPVSGHLISTEGMNAGG YGSLFGIEQSQGEYSVTLSFLRLITTLVKGQLGSTQSQGLVPCILFVLREMLPNYHRWRY NSHGVREQLGFQILSLIHAILNLCPEEEEGSSAPNLRSLCIFSLTNTEAGQAVINIMGIG VDTLNTVMLTQAGSSGTEGQGQMLMQTIKLAFSITNNVIRLKPPSSGVSPLEHALTQHGA HGNNLIAVLAKYIYHRYDPSLPRLAIQLLKRLAMVAPMSVYACLGSDAAAIRDAFLSRLR DNIEDMQIKIMILEFLTVAVETQPGLIELFLNLEAKDTNEGSKEYSLGEWSCLQVVLKLI DSQDPESSWGAPLLHRSAIAFLHALWQDRRDSAMTVLRTKPNFWENLTSPLFGTLACPSE SSELSILETCAFIMKIICLEIYYAVRGSLGDSLKKILKKFSEEERFTYWSNYVHSLVCQV AETEGTCNSLTEYQQLLSAWRMFLIVATHNADVMHLTNPEVRQKLFKDILGGTQALLVVP RSVACMHLSSMLCTVMIILLRRWKNDLAAPEDILNSLTQILEGVLQRDQQLVEKTKAQIF SALISVLEMKPMKASEIPQYSQLLLNVCETLQEEVVSLVDHTRHEVPASDTSEDKDSMET EDTGRIRQKDQRDGVCVLGLHLAKELCEADEEGDQWQQVLRKLPVLPILFSALEVSLRIK QNLHFCEAILHFLFTLAKTHQGAAAMAGAGITQTVCLPLLSVYQLSSNGAGSVQPAVSLR KSLDAPSWPGVYRLTVSLMERLLKTLRYNFLSEALDFVGVHQERILQCLSAVRTVQSLSC LEEADHTVGFLLQLSNFTKEWHFHLPQLIKDVQVNLCYLCQACTSLLHSRKMLQHYLQIK NGESMSSTATPRGQRTPQTPSKQPTAESEALELRQLRTVQHSLLKILGKTLATLRAFTPD LCQILQVQPLDLAQYNLLFALSFTTPAFDADVTPSFGTLLATVNVTLSMLGEMDKKKDHP LSRALVESNNTGESKNNKSLLLFIMENCFYLLISQAVRYLRDPSVHPRDKQRMKQELSSE LSTLLSSLSRYFRRGGPSSPAGGLMPSPQPKGASAAKVVPEAQEPLIQLVQAFVRHVQR NT seq 5220 nt NT seq  +upstreamnt  +downstreamnt atggcagcggccgggagtctatattggaggaccagtcgagaattatggaccattttgctt ggacgctcctctatgaaggatggatatcagatcaaagcagagctcgatcgatatggagac cggctccttcagggactggcatactacaagcctcccagcacaagatccgcagacaaagtg aaagccaataagaatctgtctccggccctacaggagcttggtttgcgactcagcaaattt ctggccctggatgaagagcagagcgtggagctgttacagacatatctgcagtacgattac agagggacacaggaatccgtaaaggttttgccacaggacgagaggcagagtcaagctttg atgctcaagatggcggattattactatgaggagaggatttccctgctacgctgtgtcctg tacattctgaattatttccaggatgacaagcatccctatagtgcggaattctccaaatgt gtagaattgatggagcagaaggaattattcggcaagtacctgaagcagtttgaaagtctc tgcagggaggaggccccgacatgggaaactcatggaaatttcatgacagaacgccaggtg tcccggtggtttgtgcagcgcttgcgagagcaggccatgctcctggagatcatattctta tactttgcctgttttgctgcttcgccctccgacctactagcactcaccaaactgttcaag gagcaaggctttgggtgccggctgcaaaaccaccacctcgtagaaccatcaatggaccct ctggtggagcgaattgggtacttttccatcctaatatttctggaggcgctagacatggac actctaatgacctgttctttaagtgacaaaatagagcagcatccattttcttctgaggag caggtctgcaaggagatggacagtattctggttacactgggagacgtcccacaccatgga cctgtgctgctggcctgggccctgctgcgtttcaccctgaacccggataaggttacctct gctgttcgtaaaatgggcagcaccgccattcagctccatctctttcagtatttaactcga atgcttcagtcccttagaagcggagaaaataattgtacaaccagcacggcttgtttgtgt gtctacacctttctggcatatgttctctccaccctagaggaacaagtctcacagagtcag caggatcttgtagaaacagcttgccaggtgtttgctgctccgaatttacccgatctcttc tggaacatggaacccacagcaggcctggggattcttctggacagtgtggttgggatgttc ccatttcgcatttcacctctcctaaagcttttcactgctcttgtctcaaaatcttcagca aaaaaggtgtacagcttcctagaccggatgtcttcttacactgagcactaccgccacaag ccacatgatatcctatcgcatgatgacgagacgctgtggaagaggcagacccctaaactg ctctatgcactaggactaggacaaaccaatttgcgcatcccacaaggggctctagggcaa gtgatggctgatgaaaatggcttcctggtccgctgggagtattcctatagctgctggact ctgtttacctgtgagattgagatgctgctgcatgttgtgtctacggcagatgtgatccat cagtgccaaagggtgaaacccataattgaccttgttcataaggttatcagcacagacctg tccatagctgactgtcttctgcccatcacatcacggatttacatgctcttacagaggtta acaactgtaatgaacccaccaatggatttcctctcgtcttgtgttgactgcctgacagcg ttggccacacgtttgcctgctaaggtttggacagacctaagacacacagggttcttaccc tttgcggcaaatcctgtctctgggcacttaattagcactgaagggatgaatgctggcggt tacggctcactttttggcattgagcagtcacaaggggaatacagtgtcacactctctttt ctccgcctgatcaccaccttagtgaagggacagttgggaagcacccaaagccagggactt gtgccctgtatcctctttgtgctgcgtgaaatgctcccaaattatcacaggtggcgttat aatagtcacggtgtgagggaacaactaggcttccagatcctgagtttgattcatgctatc ctcaacttatgccctgaggaagaggagggcagcagtgccccaaacctgcgatccctgtgc atcttcagcctcacaaacactgaggcaggacaggctgtcattaatatcatggggatcggc gtggacacactcaatacggtcatgctgactcaggctgggagcagtggcaccgagggccaa gggcaaatgcttatgcaaaccattaaactggctttctccatcaccaacaatgttatcagg ctgaagcccccttctagtggggtctccccgctggagcatgcactcactcagcacggagct catgggaacaatctaattgctgtcctggcaaaatacatttatcacagatatgatccgtcg ctgcccaggctggctatccagctgctgaaacgcttggctatggtggcgcctatgtcggtg tatgcctgtctgggtagcgatgcagccgcaattagagacgccttcctgagccgcctgcgg gataacatcgaggacatgcagatcaagattatgatattagaattccttactgttgctgta gagacacaacccggcctcatcgaactcttcctcaacttggaggcgaaggacacaaacgag ggctcgaaggagtacagtcttggggagtggagctgcttgcaggttgtgttgaagcttatt gattcccaagaccctgagagctcctggggtgcccctctgctccaccgttcagccatcgct ttccttcatgcactttggcaggatcggagggacagtgccatgactgtcctcagaaccaag cccaacttctgggagaacctaactagccccctgtttggaacactggcgtgtccatcagaa tcgtcagagctgagcatcctggagacctgcgctttcatcatgaaaataatttgcctagaa atttactatgcagttaggggttcactgggcgactccctgaaaaagatcctgaagaaattc tcagaggaagagagattcacttactggtccaactacgtgcattccttggtctgccaggtg gcggagaccgagggaacctgtaactcactcacggagtatcagcagctgctgtcagcttgg agaatgtttctcattgtcgcaacacacaatgcagatgtgatgcacctgaccaatcctgag gtccgacagaagctatttaaggatatcttaggtggcactcaagctctgctggttgttccc aggtcggtagcctgcatgcatctcagctccatgctttgtaccgtgatgatcatcttactc cgaaggtggaaaaatgacctagcagcccccgaggacattctcaactctctgacacagatt ctggagggcgtgttgcagagagatcagcagctggtggaaaagaccaaagcccaaatcttc tctgccctcatctctgtgctagaaatgaagccaatgaaagccagtgagatcccccagtac tcccagttgctgctcaatgtgtgtgagaccctgcaggaagaagtggtttctcttgtggat catacacgtcatgaagtccccgccagtgatacctccgaggacaaggacagcatggagacc gaggacacgggcagaatccggcagaaggatcagcgtgatggagtgtgtgtgctgggcctg catctggccaaggagctgtgtgaggcggacgaagagggagaccagtggcagcaagtgctc aggaagcttccggttctgcccattctcttcagtgccctggaggtcagcctgcgcatcaag cagaatctccacttctgtgaagccattctccacttcctcttcacactcgcaaaaacccac cagggagcagctgccatggcaggtgctgggatcactcagactgtgtgtttgcctctcctt agtgtctaccagctaagttccaatggggccggctcggtccagccagcagtgtcgctccgt aaatccctggatgccccctcctggcccggtgtctatcgactcactgtgtcactcatggag cgcctgctgaagaccttgaggtacaattttctgagcgaggcgttggactttgtgggagtt catcaggaaaggattctgcagtgtctgagtgccgtgcgcactgtgcagagcctgtcctgt ttggaagaggcagatcatacggtgggattcctgctgcagctttccaacttcaccaaagaa tggcatttccaccttccacagctgattaaggacgttcaggtgaatctctgttacctgtgc caggcctgcacttctctcctgcatagccgcaagatgctgcagcactacctacagataaag aatggagaatcaatgtcctccactgcaacaccacgtgggcagcggactccacagacacca tcgaagcagccgacggcagagagtgaggcgctagagctcaggcaactgcgcactgttcag cacagccttctaaaaatcctgggcaaaactctggccactctgcgagcgttcacccctgac ctctgccaaatcctgcaagttcagcctctggacctggcccaatataatctcctgtttgcg ctgagcttcaccactccagcatttgatgcagatgttaccccctcctttggaacccttttg gccactgttaatgttacgctgagcatgctgggagagatggataaaaagaaagatcatccc ctcagtcgagctctggtggagtccaacaacactggagagagcaagaacaacaagtctctg ctgctcttcatcatggagaactgcttctacctgttgatatcacaagctgtgcgctacctt cgggacccatctgttcacccacgggacaagcagcgtatgaagcaagaactgagctcggag ctgagtacactgctgtccagtctgtctcgttacttccggaggggtggcccctcctctcct gccggcggccttatgccctcccctcagccaaagggtgcatcggctgctaaagtagtccct gaagctcaggagcccctcatccagctggtacaagcatttgtgcgccacgtacagagataa

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