Xenopus laevis (African clawed frog): 108700098
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Entry
108700098 CDS
T01010
Symbol
col4a5.S
Name
(RefSeq) collagen alpha-5(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108700098 (col4a5.S)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108700098 (col4a5.S)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108700098 (col4a5.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108700098 (col4a5.S)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108700098 (col4a5.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108700098 (col4a5.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108700098 (col4a5.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108700098
NCBI-ProteinID:
XP_018088458
Xenbase:
XB-GENE-6486725
UniProt:
A0A8J0TGS7
LinkDB
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Position
8S:57829573..57978445
Genome browser
AA seq
1685 aa
AA seq
DB search
MRLGGWQRRVPCLAALLLVLGYWAQSAESAACQGCKSVSKCDCSGVKGEKGERGLPGLEG
HLGLPGFPGPEGPPGTRGPKGDAGIPGPLGPKGIRGPPGLPGFPGNPGQPGLPGQDGAPG
PPGIPGCNGTKGERGFSGSSGFSGAPGPPGPPGFPGVKGDPGESFPIAQGEKGDPGLPGL
PGLPGLLGPHGIQGPVGRPGPAGLPGAQGPPGAPGPKGNMGLNFQGSKGEKGEPGIQGLP
GPPGQLEQVEPPQTTIQKGEKGVPGDQGFPGERGSMGPPGPPGGAKGEKGEPGEPGKIGK
PGKYGKNGLPGVEGLRGDPGLPGSPGRGGEQGQKGDRGLPGPPGEVISRPGIGKVGPKGN
TGPPGITGPKGDHGFPGLQGPPGFPGSPGTSSVGLPGSPGLPGERGQKGDDGPPGISIPG
LPGSEGLRGPPGAPGLPGRPGPPSVPQAEICQPGSPGVPGLPGDPGYAGERGQKGDKGDT
CYNCLGNGILGPKGDPGLPGPAGSPGLPGATGQKGEQGTPGLNGLPGPPGFPGSPGSSGR
PGPKGEPGEVIGGIGIKGEKGDPGFPGPAGSSGLDGPLGRDGTPGIPGPKGEPGGFALNG
DRGLPGDPGLPGLPGDRGLMGPPGFGPSGPPGEKGIQGVSGRPGAPGIPGLKGAPGQTVM
EKGDPGPPGLPGIPGDTGNPGELGLPGQPGVPGVSGAKGEPGVPGIGVPGPAGPKGFPGN
PGPSGAPGLAGRPGSDGLPGQPGLPGSKGDPGYGLPGLQGTPGPAGLKGSQGPKGESGFP
GSPGLPGRAGFDGPVGPKGDPGQNGLSGPPGPPGVPGIGGQGPPGQPGLPGPAGPPGSPG
IQGGKGDPGAPGFDMPGPPGDRGNPGFPGEQGFTGPPGPPGAQGHDGLPGFPGAKGEMGV
MGPPGPVGTAGNPGNPGLPGPKGNDGNSGQPGLPGLPGREGEKGDTGPAGPPGIIDSANL
ELKGIKGEPGLPGAPGISGPKGAAGLPGNSGLPGQIGLPGSSGLPGPKGDPGLPGQPGIS
GAPGLKGSMGEMGLPGPLGAKGSPGQPGRPGVSGSPGFFGLKGEKGDPGISGIGIPGLPG
QKGEPGQNGFPGSPGAKGNPGNPGLPGLSGITGPKGDPGLPGFPGSPGAPGPKGADGPTG
NSGLPGPPGIRGESGRPGLQGPPGEKGQPGQDGIPGPSGLKGEPGLPGFGSPGLPGLPGS
LGPKGDAGLPGTPGNPGFPGFKGDQGFPGSSGPQGPPGQAGLTGPRTEGPKGDPGPVGPS
GRPGPPGLEGARGPPGEGSFKGEKGNPGLPGQPGFPGTKGEPGARGFPGDPGRPGLNGMK
GDQGVPGVPGFPGMKGPGGPPGLGGIQGEPGLPGDMGLPGPPGPKGEYREIKGASGLPGP
PGRPGANGPPGSLGPPGLPGPLGLPGDPGRDGLPGFEGQSGRKGERGPPGQPGSRGINGP
PGPDGLQGPPGPSGLGSVAHGFLMTRHSQSTDVPGCPLGTTSIYDGYSLLYVQGNERAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMDPLRGRDIQPF
ISRCAVCEAPAMVIAVHSQTIQIPQCPQGWSSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVEMSEMFSKPQSETLKAGDLRTRVSRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgggaggttggcagcggcgggtgccctgcctggctgcgttgctgttggtgctg
ggctactgggcacagagtgcagagtctgcggcctgccaaggttgtaaatcagtatcgaaa
tgtgactgcagcggtgttaaaggagaaaagggtgagagaggccttccagggttagaagga
cacttgggtctaccaggatttcctggacctgaaggaccgcctggaactcgtggtccaaag
ggtgatgctggtattccaggacccttaggacccaaaggaatacgaggacctcctggactt
cccggatttccaggaaaccctggtcagcctggcctgccaggacaagatggtgcaccagga
cctccaggtatcccaggatgcaatggcacaaagggagaacgtggtttctcaggaagttca
ggtttttcaggtgcaccaggaccaccgggtcccccaggatttccaggggtgaaaggagat
ccaggtgaatctttccccattgcacaaggagaaaaaggtgacccaggattaccaggcctt
ccaggtttaccaggtttgcttggtcctcatggaattcagggtcccgtgggtcgtcctggt
cctgctggcttaccgggggcacaaggaccacctggagctccaggacccaagggtaacatg
gggctcaatttccagggatcaaagggtgaaaagggtgaacccggtattcagggacttcca
ggaccaccgggacaactagagcaagttgaacctccacaaactacaattcagaagggagag
aagggtgtccccggtgaccaaggattcccaggagagcgtggatcaatgggtcctccaggt
cctcctggaggtgcaaaaggagagaagggagaaccaggggaaccaggaaagattgggaag
ccaggaaaatatgggaagaatggactgcctggtgtcgagggtctcaggggtgacccaggc
ttgccaggaagtccgggcagaggtggggagcagggtcagaaaggtgaccgtgggttacct
gggccaccaggagaggttatttcaagaccaggaataggtaaagttggaccaaagggaaac
acaggaccccctggaataacagggccaaaaggagaccatgggttccctggattacaaggt
cctcctggttttcctggatcaccaggtacttcaagtgtaggcctcccaggaagtccaggc
cttcctggtgaaagagggcagaagggtgatgatggtccaccaggaatttccattccaggg
cttccaggttctgaaggacttagaggaccccctggtgccccaggtttgcctggtcgacct
ggaccaccttcagttcctcaggcggagatatgccagccaggatcacctggtgttccagga
cttccaggagatccaggatatgcaggagaaagaggacagaaaggcgataaaggagacaca
tgttataactgcctaggaaatggtattttaggtccaaaaggtgatcctggtttgcctggc
cccgctggaagtccaggcttacctggagctacagggcaaaaaggggagcaaggcactcca
ggattaaatgggcttccaggacctccgggtttccctggcagtcccggttcctctggacga
cctggtcccaaaggagaacctggagaagtaattggtggtatcggaattaaaggagaaaag
ggggatcctggattccctggtccagctggatcttctggtctggatggcccacttggaaga
gatggaactccagggatacctgggcctaagggagagccgggtggctttgcattgaacggt
gatcgtggtcttcctggtgaccctgggctccctggacttcctggagaccgaggactaatg
ggtcctcctggttttggtcccagtggtccacctggagagaagggaattcaaggtgtttct
ggtcgaccaggagcccctggcattcctggccttaaaggagctcctggacaaactgtgatg
gaaaaaggggatcctggacctccaggtcttccaggtatcccaggggataccggaaatcca
ggtgaactgggtctgcctggtcagccaggagttccaggtgtttcaggtgcaaagggagaa
ccaggggttccaggcattggagttcctgggcctgcaggcccaaaaggatttcctggtaat
cctgggccatccggtgcccctgggttggcaggaagacctggttcagatgggttgcctgga
cagcctggcttaccaggatcaaagggtgaccctggatatgggttacctgggctccaaggc
accccaggccctgctggattgaaaggatcccaaggaccaaaaggagaatctggcttccca
ggatcgccaggccttcctggacgagcagggtttgatggtcctgtaggaccaaaaggtgac
cctggacaaaatggcttatcaggaccccccggaccacctggtgtacctggcattggtggt
caaggtccgccagggcaaccaggacttccagggccagcaggtcctccagggagcccagga
atacaggggggaaaaggagatcctggcgctccagggtttgacatgccaggcccaccagga
gatcgtggtaatcctggatttccaggagaacaaggatttacaggtccaccagggccccca
ggtgcccaaggtcatgatggattaccaggcttcccaggtgctaaaggtgaaatgggtgtt
atgggaccaccaggacctgttggaacagctggtaatcctggaaaccctggtttacctggg
cctaaaggaaatgatgggaattctggtcaacctggcctgccgggcctaccaggtagggaa
ggtgaaaagggagatacaggaccagcaggacctcctggaataattgattctgcaaactta
gagcttaaaggaattaaaggagaacctggattgccaggtgcaccaggaataagtggacca
aaaggtgctgctggacttccaggtaactcaggactcccaggacagattggacttccagga
tcttcaggacttccagggcccaagggagatcctggtcttcctggtcagcctggtatttca
ggtgctcctgggttgaaagggagcatgggagagatgggacttcctgggccacttggtgct
aaaggttcccctggacaaccaggacgacctggagtatcagggtctcctgggttttttgga
ctaaaaggtgaaaaaggtgatccaggcatttcaggaattggcatcccaggcttgcctgga
caaaagggtgaaccagggcaaaatggctttccaggcagccctggtgctaaaggtaaccca
ggaaacccaggactgcccggcctatcagggattacaggacctaaaggagatccaggtctt
ccaggatttccaggcagcccaggagctccaggacctaaaggagctgatgggcccacagga
aactctgggttacctgggcctccaggcattcggggtgaatcaggtcgtcctggacttcaa
ggacctcctggtgaaaagggtcaaccaggtcaggatggaattcctgggccttctggtttg
aagggagaaccaggtttgccaggttttggatcaccagggttacctggccttccaggaagt
ctaggtccaaagggtgatgcaggacttcctggaacccctggaaaccccggatttccaggt
ttcaaaggagatcaaggctttccgggatcttctgggccacaaggacctccaggacaagct
ggcctaacagggccacggacagaaggacccaagggagatcctgggcctgtaggtccctct
ggaagaccaggtcctcctggcctagaaggtgcccgtggtccccctggtgagggaagtttt
aaaggagaaaaaggaaaccctggacttccaggtcagcctggatttccaggaactaaagga
gaaccaggagcacgtggtttcccaggtgacccaggacgaccaggtcttaatgggatgaaa
ggtgaccaaggtgttcctggtgttccaggattcccaggtatgaaaggaccaggtggccct
cctggattgggtggcattcaaggtgaaccaggtctcccaggtgatatgggtttgccaggt
cctcctgggcctaaaggagaataccgtgagatcaaaggagcttcaggtctgccaggtccc
cccggtcgcccaggagcaaatggacctccaggatcccttggaccacccggacttccaggt
cctttgggtctccctggagatcctggcagagatggactccctggatttgagggacaaagt
ggaagaaagggtgaacgtggcccaccaggccaaccaggatctcgaggaattaatggtcca
cccggtccagacggtttacaaggtcctcctggcccctctgggctaggatctgttgctcat
ggattccttatgacccggcacagtcaatcaacagatgtcccaggctgtccgcttggaacc
accagtatctatgatggctattccctactgtatgtgcaaggaaatgagagggcacacgga
caagatttgggtaccgctggcagctgcctccgccgcttcagcacaatgcctttcatgttc
tgcaacattaataacgtgtgtaactttgcttcaagaaatgattattcctactggctgtcc
acgccggagcctatgcctatgagcatggatcctttaagagggagggatattcagccattc
attagcaggtgtgctgtttgtgaagctccagctatggtgattgcagtccacagccagaca
atacaaatcccacaatgcccacaaggctggtcctctctctggattggatactctttcatg
atgcatacaagtgccggtgctgaaggctcaggacaagctctggcatcacctggatcctgc
ttggaagaattccgatccgcgcctttcattgaatgtcacggccggggaacctgcaattac
tatgccaattcgtacagtttttggttggccacagtggaaatgtctgaaatgtttagcaaa
cctcagtcggaaacactaaaagcgggtgatctaaggacacgtgtcagtcgttgccaagta
tgtatgaagaggacgtaa
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