Xenopus laevis (African clawed frog): 108700098
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Entry
108700098 CDS
T01010
Symbol
col4a5.S
Name
(RefSeq) collagen alpha-5(IV) chain isoform X2
KO
K06237
collagen type IV alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04382
Cornified envelope formation
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04518
Integrin signaling
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108700098 (col4a5.S)
04518 Integrin signaling
108700098 (col4a5.S)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108700098 (col4a5.S)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108700098 (col4a5.S)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108700098 (col4a5.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108700098 (col4a5.S)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108700098 (col4a5.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108700098 (col4a5.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108700098 (col4a5.S)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108700098
NCBI-ProteinID:
XP_018088458
Xenbase:
XB-GENE-6486725
UniProt:
A0A8J0TGS7
LinkDB
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Position
8S:57829573..57978445
Genome browser
AA seq
1685 aa
AA seq
DB search
MRLGGWQRRVPCLAALLLVLGYWAQSAESAACQGCKSVSKCDCSGVKGEKGERGLPGLEG
HLGLPGFPGPEGPPGTRGPKGDAGIPGPLGPKGIRGPPGLPGFPGNPGQPGLPGQDGAPG
PPGIPGCNGTKGERGFSGSSGFSGAPGPPGPPGFPGVKGDPGESFPIAQGEKGDPGLPGL
PGLPGLLGPHGIQGPVGRPGPAGLPGAQGPPGAPGPKGNMGLNFQGSKGEKGEPGIQGLP
GPPGQLEQVEPPQTTIQKGEKGVPGDQGFPGERGSMGPPGPPGGAKGEKGEPGEPGKIGK
PGKYGKNGLPGVEGLRGDPGLPGSPGRGGEQGQKGDRGLPGPPGEVISRPGIGKVGPKGN
TGPPGITGPKGDHGFPGLQGPPGFPGSPGTSSVGLPGSPGLPGERGQKGDDGPPGISIPG
LPGSEGLRGPPGAPGLPGRPGPPSVPQAEICQPGSPGVPGLPGDPGYAGERGQKGDKGDT
CYNCLGNGILGPKGDPGLPGPAGSPGLPGATGQKGEQGTPGLNGLPGPPGFPGSPGSSGR
PGPKGEPGEVIGGIGIKGEKGDPGFPGPAGSSGLDGPLGRDGTPGIPGPKGEPGGFALNG
DRGLPGDPGLPGLPGDRGLMGPPGFGPSGPPGEKGIQGVSGRPGAPGIPGLKGAPGQTVM
EKGDPGPPGLPGIPGDTGNPGELGLPGQPGVPGVSGAKGEPGVPGIGVPGPAGPKGFPGN
PGPSGAPGLAGRPGSDGLPGQPGLPGSKGDPGYGLPGLQGTPGPAGLKGSQGPKGESGFP
GSPGLPGRAGFDGPVGPKGDPGQNGLSGPPGPPGVPGIGGQGPPGQPGLPGPAGPPGSPG
IQGGKGDPGAPGFDMPGPPGDRGNPGFPGEQGFTGPPGPPGAQGHDGLPGFPGAKGEMGV
MGPPGPVGTAGNPGNPGLPGPKGNDGNSGQPGLPGLPGREGEKGDTGPAGPPGIIDSANL
ELKGIKGEPGLPGAPGISGPKGAAGLPGNSGLPGQIGLPGSSGLPGPKGDPGLPGQPGIS
GAPGLKGSMGEMGLPGPLGAKGSPGQPGRPGVSGSPGFFGLKGEKGDPGISGIGIPGLPG
QKGEPGQNGFPGSPGAKGNPGNPGLPGLSGITGPKGDPGLPGFPGSPGAPGPKGADGPTG
NSGLPGPPGIRGESGRPGLQGPPGEKGQPGQDGIPGPSGLKGEPGLPGFGSPGLPGLPGS
LGPKGDAGLPGTPGNPGFPGFKGDQGFPGSSGPQGPPGQAGLTGPRTEGPKGDPGPVGPS
GRPGPPGLEGARGPPGEGSFKGEKGNPGLPGQPGFPGTKGEPGARGFPGDPGRPGLNGMK
GDQGVPGVPGFPGMKGPGGPPGLGGIQGEPGLPGDMGLPGPPGPKGEYREIKGASGLPGP
PGRPGANGPPGSLGPPGLPGPLGLPGDPGRDGLPGFEGQSGRKGERGPPGQPGSRGINGP
PGPDGLQGPPGPSGLGSVAHGFLMTRHSQSTDVPGCPLGTTSIYDGYSLLYVQGNERAHG
QDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPMSMDPLRGRDIQPF
ISRCAVCEAPAMVIAVHSQTIQIPQCPQGWSSLWIGYSFMMHTSAGAEGSGQALASPGSC
LEEFRSAPFIECHGRGTCNYYANSYSFWLATVEMSEMFSKPQSETLKAGDLRTRVSRCQV
CMKRT
NT seq
5058 nt
NT seq
+upstream
nt +downstream
nt
atgaggctgggaggttggcagcggcgggtgccctgcctggctgcgttgctgttggtgctg
ggctactgggcacagagtgcagagtctgcggcctgccaaggttgtaaatcagtatcgaaa
tgtgactgcagcggtgttaaaggagaaaagggtgagagaggccttccagggttagaagga
cacttgggtctaccaggatttcctggacctgaaggaccgcctggaactcgtggtccaaag
ggtgatgctggtattccaggacccttaggacccaaaggaatacgaggacctcctggactt
cccggatttccaggaaaccctggtcagcctggcctgccaggacaagatggtgcaccagga
cctccaggtatcccaggatgcaatggcacaaagggagaacgtggtttctcaggaagttca
ggtttttcaggtgcaccaggaccaccgggtcccccaggatttccaggggtgaaaggagat
ccaggtgaatctttccccattgcacaaggagaaaaaggtgacccaggattaccaggcctt
ccaggtttaccaggtttgcttggtcctcatggaattcagggtcccgtgggtcgtcctggt
cctgctggcttaccgggggcacaaggaccacctggagctccaggacccaagggtaacatg
gggctcaatttccagggatcaaagggtgaaaagggtgaacccggtattcagggacttcca
ggaccaccgggacaactagagcaagttgaacctccacaaactacaattcagaagggagag
aagggtgtccccggtgaccaaggattcccaggagagcgtggatcaatgggtcctccaggt
cctcctggaggtgcaaaaggagagaagggagaaccaggggaaccaggaaagattgggaag
ccaggaaaatatgggaagaatggactgcctggtgtcgagggtctcaggggtgacccaggc
ttgccaggaagtccgggcagaggtggggagcagggtcagaaaggtgaccgtgggttacct
gggccaccaggagaggttatttcaagaccaggaataggtaaagttggaccaaagggaaac
acaggaccccctggaataacagggccaaaaggagaccatgggttccctggattacaaggt
cctcctggttttcctggatcaccaggtacttcaagtgtaggcctcccaggaagtccaggc
cttcctggtgaaagagggcagaagggtgatgatggtccaccaggaatttccattccaggg
cttccaggttctgaaggacttagaggaccccctggtgccccaggtttgcctggtcgacct
ggaccaccttcagttcctcaggcggagatatgccagccaggatcacctggtgttccagga
cttccaggagatccaggatatgcaggagaaagaggacagaaaggcgataaaggagacaca
tgttataactgcctaggaaatggtattttaggtccaaaaggtgatcctggtttgcctggc
cccgctggaagtccaggcttacctggagctacagggcaaaaaggggagcaaggcactcca
ggattaaatgggcttccaggacctccgggtttccctggcagtcccggttcctctggacga
cctggtcccaaaggagaacctggagaagtaattggtggtatcggaattaaaggagaaaag
ggggatcctggattccctggtccagctggatcttctggtctggatggcccacttggaaga
gatggaactccagggatacctgggcctaagggagagccgggtggctttgcattgaacggt
gatcgtggtcttcctggtgaccctgggctccctggacttcctggagaccgaggactaatg
ggtcctcctggttttggtcccagtggtccacctggagagaagggaattcaaggtgtttct
ggtcgaccaggagcccctggcattcctggccttaaaggagctcctggacaaactgtgatg
gaaaaaggggatcctggacctccaggtcttccaggtatcccaggggataccggaaatcca
ggtgaactgggtctgcctggtcagccaggagttccaggtgtttcaggtgcaaagggagaa
ccaggggttccaggcattggagttcctgggcctgcaggcccaaaaggatttcctggtaat
cctgggccatccggtgcccctgggttggcaggaagacctggttcagatgggttgcctgga
cagcctggcttaccaggatcaaagggtgaccctggatatgggttacctgggctccaaggc
accccaggccctgctggattgaaaggatcccaaggaccaaaaggagaatctggcttccca
ggatcgccaggccttcctggacgagcagggtttgatggtcctgtaggaccaaaaggtgac
cctggacaaaatggcttatcaggaccccccggaccacctggtgtacctggcattggtggt
caaggtccgccagggcaaccaggacttccagggccagcaggtcctccagggagcccagga
atacaggggggaaaaggagatcctggcgctccagggtttgacatgccaggcccaccagga
gatcgtggtaatcctggatttccaggagaacaaggatttacaggtccaccagggccccca
ggtgcccaaggtcatgatggattaccaggcttcccaggtgctaaaggtgaaatgggtgtt
atgggaccaccaggacctgttggaacagctggtaatcctggaaaccctggtttacctggg
cctaaaggaaatgatgggaattctggtcaacctggcctgccgggcctaccaggtagggaa
ggtgaaaagggagatacaggaccagcaggacctcctggaataattgattctgcaaactta
gagcttaaaggaattaaaggagaacctggattgccaggtgcaccaggaataagtggacca
aaaggtgctgctggacttccaggtaactcaggactcccaggacagattggacttccagga
tcttcaggacttccagggcccaagggagatcctggtcttcctggtcagcctggtatttca
ggtgctcctgggttgaaagggagcatgggagagatgggacttcctgggccacttggtgct
aaaggttcccctggacaaccaggacgacctggagtatcagggtctcctgggttttttgga
ctaaaaggtgaaaaaggtgatccaggcatttcaggaattggcatcccaggcttgcctgga
caaaagggtgaaccagggcaaaatggctttccaggcagccctggtgctaaaggtaaccca
ggaaacccaggactgcccggcctatcagggattacaggacctaaaggagatccaggtctt
ccaggatttccaggcagcccaggagctccaggacctaaaggagctgatgggcccacagga
aactctgggttacctgggcctccaggcattcggggtgaatcaggtcgtcctggacttcaa
ggacctcctggtgaaaagggtcaaccaggtcaggatggaattcctgggccttctggtttg
aagggagaaccaggtttgccaggttttggatcaccagggttacctggccttccaggaagt
ctaggtccaaagggtgatgcaggacttcctggaacccctggaaaccccggatttccaggt
ttcaaaggagatcaaggctttccgggatcttctgggccacaaggacctccaggacaagct
ggcctaacagggccacggacagaaggacccaagggagatcctgggcctgtaggtccctct
ggaagaccaggtcctcctggcctagaaggtgcccgtggtccccctggtgagggaagtttt
aaaggagaaaaaggaaaccctggacttccaggtcagcctggatttccaggaactaaagga
gaaccaggagcacgtggtttcccaggtgacccaggacgaccaggtcttaatgggatgaaa
ggtgaccaaggtgttcctggtgttccaggattcccaggtatgaaaggaccaggtggccct
cctggattgggtggcattcaaggtgaaccaggtctcccaggtgatatgggtttgccaggt
cctcctgggcctaaaggagaataccgtgagatcaaaggagcttcaggtctgccaggtccc
cccggtcgcccaggagcaaatggacctccaggatcccttggaccacccggacttccaggt
cctttgggtctccctggagatcctggcagagatggactccctggatttgagggacaaagt
ggaagaaagggtgaacgtggcccaccaggccaaccaggatctcgaggaattaatggtcca
cccggtccagacggtttacaaggtcctcctggcccctctgggctaggatctgttgctcat
ggattccttatgacccggcacagtcaatcaacagatgtcccaggctgtccgcttggaacc
accagtatctatgatggctattccctactgtatgtgcaaggaaatgagagggcacacgga
caagatttgggtaccgctggcagctgcctccgccgcttcagcacaatgcctttcatgttc
tgcaacattaataacgtgtgtaactttgcttcaagaaatgattattcctactggctgtcc
acgccggagcctatgcctatgagcatggatcctttaagagggagggatattcagccattc
attagcaggtgtgctgtttgtgaagctccagctatggtgattgcagtccacagccagaca
atacaaatcccacaatgcccacaaggctggtcctctctctggattggatactctttcatg
atgcatacaagtgccggtgctgaaggctcaggacaagctctggcatcacctggatcctgc
ttggaagaattccgatccgcgcctttcattgaatgtcacggccggggaacctgcaattac
tatgccaattcgtacagtttttggttggccacagtggaaatgtctgaaatgtttagcaaa
cctcagtcggaaacactaaaagcgggtgatctaaggacacgtgtcagtcgttgccaagta
tgtatgaagaggacgtaa
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