Xenopus laevis (African clawed frog): 108700244
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Entry
108700244 CDS
T01010
Symbol
dhx16.S
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108700244 (dhx16.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108700244 (dhx16.S)
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108700244 (dhx16.S)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108700244 (dhx16.S)
Complex C
U4/U6.U5 tri-SnRNP related factors
108700244 (dhx16.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
SRP54
Flavi_DEAD
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108700244
NCBI-ProteinID:
XP_018088757
Xenbase:
XB-GENE-6486356
UniProt:
A0A974H6J7
A0A1L8F3Q7
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All DBs
Position
8S:complement(82342319..82367467)
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AA seq
1032 aa
AA seq
DB search
MEGVEMWVKNQLHDVLGMSDRHVAQFLVGTALRSTSTADLLTRLRDTGAIDVTEKVKGFL
EELWQRIPRKAPVERPARAAEREAMAMQEKNKSYTLLEDSEEEEKPNSRDEKRKKKHLRK
RRKEESSDSENENVQTTKVPSPQNTSEDEDEREELARLKDLEERDAFAERVKKRDKEKTR
NIVERSDKKAYEEAQKRLKLAEEDRKQMIPELRKKSRREYLNKREKEKLEDLEAEIADEE
YLFVEPDLSKTEKKELEYKRRVRDLAKEYKKAGEKERMEKHDRYFMPEENRSKKIPDRYE
EPVTEERFAPREEQRRWEEEHIGAASLRFGAKNARDQGKEYEFVMEENEVIQFVSSARMK
GTMDKEEENSETLSESERRKLSIQEVRRSLPVFPYRSDLLQAVSNHQILIIEGETGSGKT
TQIPQYLHEHGYTNNGLKIGCTQPRRVAAMSVAARVSEEMGVKLGNEVGYSIRFEDCTSE
RTVLKYMTDGMLLREFLTEPDLATYSVIIIDEAHERTLHTDVLFGLIKDIARFRPDLKVL
VASATLNTERFSSFFDDAPVFRIPGRRYPVDIYYTKAPEADYLEACVVSVLQIHVTQPSG
DILVFLTGQEEIEACCEMLQERCRRLGSKIAEMLVLPIYANLPSDMQAKIFDPTPPGARK
VVIATNIAETSLTIDGIIYVIDPGFCKQKSYNARSGMESLIVTPCSKASANQRAGRAGRV
AAGKCFRLYTAWAYKHEMEDTTVPEIQRTNLGNVVLLLKSLGINDLIHFDFMDPPPHETL
VLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKMILASEKYGCAEQILTIAAMLSV
NNTIFYRPKDKLVHADTARANFTVPGGDHMVLLNVYTQWVESGHSLQWCYENFIQARSLR
RARDVREQLEGLMGRIEIELTSCEGDCVPVRKAITAGYFYHTARLTRSGYKTVKQQQAVY
IHPNSSLHEEQPRWVIYHELVFTTKEYMRQIIEIDSTWLLEVAPHYYKSRELEDPASKKM
PRKAGKSKEELG
NT seq
3099 nt
NT seq
+upstream
nt +downstream
nt
atggaaggagtggagatgtgggtgaagaatcagctccatgatgttctgggcatgagtgac
cgacatgtggctcagttcctggttggtactgctctgagaagtacgagcactgctgacctg
ctgacccgtcttagggacactggggccattgatgtgactgaaaaagtgaaggggttcctt
gaggagctctggcagaggatccctagaaaggcccctgttgagcgaccagctcgggctgct
gaacgagaagcaatggctatgcaggagaagaataaatcatacactttgctagaggatagt
gaagaagaggagaagcctaatagcagagatgagaaaaggaaaaagaaacacttaaggaaa
agaaggaaagaggagtcatctgatagtgaaaatgaaaatgtgcagaccactaaggtacca
tcccctcaaaatacctcagaggatgaagatgagagagaggagttggcacgattaaaagat
ctggaggagcgagatgcctttgcagaaagagtgaagaaaagagataaagaaaaaacaaga
aatattgtagagaggtcagataagaaggcatacgaagaagcccaaaaaaggctgaaatta
gcagaagaagatcgcaaacaaatgattcctgagctaaggaagaagtcccgtagggaatac
ctgaataaaagagaaaaagagaagctggaggatctagaggcagaaatagcagatgaagag
tatctttttgtggaacctgatttgagtaaaacagagaagaaggagcttgaatataagcgc
agggtgcgtgatcttgcaaaggaatacaagaaggctggggaaaaagagagaatggaaaag
catgaccgctattttatgccagaagaaaaccggagtaagaaaattcctgatcgctatgag
gaacctgtgactgaggaaagatttgctccacgtgaagaacagaggcggtgggaagaggag
catattggggcagcttctctgagatttggagcaaagaatgcacgtgatcaagggaaggag
tatgaatttgtaatggaagaaaatgaggtcatacagtttgttagctcagcacgcatgaag
gggactatggataaggaggaggagaattctgaaaccttgtctgaatcagaacggaggaaa
ctgtctatacaagaggttcgacgcagtctccctgtcttcccgtatcgttctgatcttctt
caagcagtctccaatcatcagattctcatcattgaaggagagactggatctggcaagaca
acccaaataccacagtacctgcatgaacatggttatactaacaatggtttaaagattggt
tgcacacaacctcgaagagtggctgccatgagtgtagcagcacgagtttccgaagagatg
ggcgttaaactaggcaatgaggtaggatatagcattaggtttgaagactgcacatctgag
cgcacagtgctgaagtatatgacagatgggatgttactgcgggaattcctcactgagcct
gatctggcaacttacagtgtaataataatagatgaagctcatgaacggactttgcacaca
gatgttcttttcggcctcattaaagacattgcccgtttccgcccagacctcaaagttttg
gttgccagtgccacactaaacactgagcgattctcctcgttttttgatgatgccccagtg
tttcgtattcctgggcgccggtatccagtggatatatattacaccaaggctcctgaagca
gattacttggaggcctgtgtggtgtccgtgttgcagattcatgtcacccaaccatcagga
gacatcttagtctttcttacaggacaggaagagatagaggcatgctgtgaaatgttacag
gaaagatgtcgtcggctaggatccaagattgcagagatgctagtattaccaatatatgcc
aacttgccttctgacatgcaggcaaagatctttgatcctacaccaccaggagcaagaaaa
gttgtgatagcaactaacattgctgagacttcacttacaattgatgggattatatatgtg
attgacccaggtttctgcaaacagaaaagttacaatgcccgttcaggaatggagtccctc
attgtcactccctgctcaaaggcatcagccaatcaaagggctgggagagctggacgtgtg
gcagcaggaaaatgttttcgactttatacagcttgggcatataagcatgagatggaggat
acaacagtgcctgagatccagagaactaatctgggaaatgtagttctcttgcttaaaagt
ttaggcataaacgatctaatccactttgacttcatggatccaccaccccatgagactctg
gttttagcacttgagcagctttatgcacttggtgccctgaaccaccttggagaactgaca
aagttgggtagaaggatggctgagcttcctgtggaccctatgttatccaagatgattttg
gcatctgagaagtatggttgcgctgagcagatcctcaccattgctgccatgttatctgta
aacaatactatcttttatcgacccaaagacaaattggttcatgcagatacagcgcgtgct
aattttactgtgcctgggggagaccacatggtgctgctcaatgtatatacacagtgggta
gagagtggtcactccctccaatggtgctatgagaactttatccaagctcgctctctccgc
cgagcacgagatgtgcgtgagcagcttgagggcctaatgggacgtattgagattgagttg
acatcctgtgagggggactgcgtacctgtgcgcaaggcaatcacagccggatatttctac
cacaccgcacgtcttactcgtagtggatacaagactgttaaacaacagcaggctgtctat
atccatcctaacagcagtctacacgaggagcagccccgctgggttatatatcatgaactg
gttttcactaccaaggaatatatgagacagattatagagattgacagcacatggctctta
gaggtagccccacattattacaagtctcgggagctggaagaccctgctagtaagaagatg
ccaaggaaagctggcaaaagcaaggaagagctgggctaa
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