Xenopus laevis (African clawed frog): 108700372
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Entry
108700372 CDS
T01010
Symbol
copa.S
Name
(RefSeq) coatomer subunit alpha isoform X2
KO
K05236
coatomer subunit alpha
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108700372 (copa.S)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108700372 (copa.S)
Membrane trafficking [BR:
xla04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108700372 (copa.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108700372 (copa.S)
Exosomal proteins of bladder cancer cells
108700372 (copa.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
108700372
NCBI-ProteinID:
XP_018088990
Xenbase:
XB-GENE-17335234
UniProt:
A0A1L8F4N1
A0A974C515
LinkDB
All DBs
Position
8S:99227862..99251702
Genome browser
AA seq
1224 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWVLTSLHNGVIQLWDYRMCTLIDKFDEHDGPVRGVDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVEAD
VRGISGVDLFGTSDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
EVDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLAAH
PNLNLFAAGHDGGMIVFKLERERPAYAVHGNILYYVKDRFLRQLDFNSSKDVAVMQLRSG
SKFPVFNMSYNPAENAVLLCTRASNLENSTYDLYTIPKDTDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSILIKNLKNEITKKVQVPNCDEIFYAGTGNLLLRDSDSITLFDVQQK
RTLASVKISKVKYVIWSSDMSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWEESGV
FIYTTSNHIKYALTTGDHGIIRTLDLPIYITRVKGNNVYCLDRECRPRVLTIDPTEFKFK
LALINRKYDEVLHMVRNAKLVGQSIIAYLQKKGYPEVALHFVKDEKTRFSLALECGNIEI
ALEAAKALDDKNCWEKLGEVALLQGNHQIVEMCYQRTKNFDKLSFLYLITGNLEKLRKMM
KIAEIRKDMSGQYQNALFLGDVDERVRILKNCGQKSLAYLTAATHGINDEEESLKETFDL
EKEIIPEVDPDAKLLMPPPPIMPLDTNWPLLTMSKGFFEGTIANKGKGGALAADIDVDTV
GGEGWGEDAELQLDEDGFVDAGENLGDEMAGKGQEEGGGWDVEEDLDLPPELDVPSGPSG
TAEDGFFVPPTKGSSPAQTWCNNSQLPVDHILAGSFETAMRLLHDQVGVVNFGPFKQHFL
HTFSRGRSTYQALPGLPAMYGYPQRNWKDAGLKNGLPAVGLKLNDLIQRLQLCYQLTTSG
KFEEAVEKFRLILLSLPLLVVDNKQEISEAQQLITICREYIVGLSMEIERKKLPKDTLEQ
QKRICEMAAYFTHSNLQPVHMILVLRTAVNLFFKLKNFKTAATFARRLLELGPKPEVAQQ
TRKILSACEKNLTDTYQLNYDMHNPFDICAASYRPIYRGKPVEKCPLSGACYSPEFKGQI
CRVTTVTEIGKDVIGLRISPLQLR
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgctgaccaagttcgagacaaagtccgcccgagtcaaagggctgagctttcacccgaag
aggccgtgggtcctcaccagtctgcacaatggagtcatccagctgtgggattaccggatg
tgcactcttatcgacaagtttgatgagcatgacggtcccgtccgtggcgttgacttccac
aagcagcagccactgtttgtctctgggggagatgactacaaaatcaaggtgtggaattac
aagctccggcgctgcctcttcactctgctgggacatcttgattatatccgcaccaccttc
ttccatcatgagtacccctggatcctgagcgcgtccgatgaccagaccatccgcatctgg
aactggcagtctcgcacttgtgtttgcgttcttactggtcacaaccattacgtcatgtgc
gctcagttccacccctctgaagacctggtggtctctgccagcttggatcagactgtgcgc
gtttgggatatttctggcctgaggaagaagaacttgtctcctggagcagtggaagccgat
gtccgggggatctctggggtggatctgtttgggacgtctgatgcggtggtgaagcatgtt
ctagaggggcacgaccgtggagttaactgggccgccttccaccccaccatgcctttgatt
gtgtcaggagcagacgacagacaagtgaaaatctggaggatgaacgagtcgaaagcctgg
gaagtagacacatgccgtggtcattacaacaatgtctcatgcgccgtctttcatcctcgc
caagagctgattctcagtaactccgaggacaaaagcattcgagtgtgggacatgtccaaa
aggactggggtccagactttccgcagagaccacgaccgcttctgggttcttgccgcccac
cccaatcttaacctttttgcagcaggacatgatggtgggatgatcgtgttcaagctggaa
cgagagcggcccgcttatgctgtgcatggaaatatcttgtattatgtcaaggacagattc
ctgcgccagttggactttaacagctccaaggatgtggctgtgatgcagctaagaagcggc
tccaagttcccggtgttcaatatgtcgtacaacccagctgaaaatgctgtcctgctttgc
acgagagccagcaacctggagaacagcacctatgacctgtacaccatccccaaggatacc
gactcccagaatcccgatgcccctgaagggaagcgatcctctggtctgactgcagtgtgg
gtggcgcggaatagatttgcagtcctggatcgcatgcattcaattctcattaagaacctg
aagaacgagatcaccaagaaggtccaggtgcccaactgcgatgagatcttttatgctggg
acggggaacctgcttctccgagactctgactccatcactctgtttgacgtgcagcagaag
cgaactctggcatctgtaaagatctccaaagtgaagtatgtcatttggtcatcagacatg
tcccatgtggctcttctggccaagcacgctattatgatctgcaatagaaagctggaatcc
ctctgcaacatccatgagaatatccgtgtcaagagtggtgcctgggaggagagtggggtg
ttcatctacactaccagcaaccacatcaaatacgctctcaccactggagatcacggtatt
atacggacactggatctgcccatttacataacacgtgtcaagggcaacaatgtatattgc
ctggatagagaatgcaggcctcgagtgctgaccatcgatcctactgaattcaagttcaag
ctcgctttgattaacaggaagtacgatgaggtgctgcacatggtgagaaatgctaaactc
gtgggtcagtccataattgcctacctccaaaagaagggctacccagaagtggcgctgcac
tttgtgaaggatgagaagacccgattcagcctggctctggaatgtggaaacattgagatc
gcccttgaagcagccaaagctctggatgacaagaattgctgggagaaactgggggaggtg
gccctgctacaagggaaccaccagattgtggagatgtgctaccagcgcaccaagaatttt
gacaagctctctttcctttaccttattactggcaacctcgaaaaactgcgcaagatgatg
aaaatcgcggagatccgtaaagacatgagtggccagtaccagaatgctctcttccttggg
gatgtggatgaaagggtgcggatactgaagaactgtgggcagaaatctctggcctacctg
acagctgccacccacggaatcaacgatgaagaggagagcttgaaggagacctttgaccta
gaaaaagagataatcccagaggttgaccctgatgctaagctgctgatgcctccacccccc
atcatgcctctggacactaactggcctctgttgaccatgtctaagggcttctttgaagga
accattgcaaacaaaggtaaaggcggagcactggccgcagatattgatgtggatactgtg
ggaggtgaaggctggggagaagatgctgaacttcagttggatgaagatggttttgtggat
gctggggaaaacttgggagacgagatggcaggaaaaggacaagaggagggtggaggatgg
gatgtggaagaggatcttgaccttccccctgagctggatgttccctctggcccgtctggc
actgctgaagatggcttctttgtgcccccaactaaaggcagcagtccagctcagacatgg
tgtaataactcccagcttcctgttgatcacatcctggccggctcctttgaaactgcaatg
cggttgctccatgaccaagttggagtggtaaactttggcccatttaagcaacatttcctc
cacaccttctcccgaggtcgcagcacataccaggccctgccgggtctccctgccatgtat
ggctacccccagcgcaattggaaggatgcaggcttgaagaacgggcttcctgctgttggc
ctgaagctcaacgacctgatccagcgcttacagctctgctaccagctcaccacctctggc
aagtttgaggaggctgtggagaagttccgcctgatccttctcagcttgccactgcttgtc
gtggacaataagcaagagatttcagaggcccagcagctaatcactatttgtcgggaatac
attgtgggtctgtccatggagattgaacgcaagaaactcccgaaagacactttggagcaa
caaaaacgtatctgtgagatggccgcttatttcacacactccaacctgcagcccgttcac
atgattctggtactgagaacagcagtcaacctcttcttcaaactcaagaattttaaaaca
gctgctacttttgcccggcgactccttgagcttggtccaaagccagaggttgctcaacag
acccgtaaaatattgtcggcttgtgagaagaacttgacagacacctatcagctcaactat
gacatgcacaatccctttgatatctgcgctgcctcttaccggcccatctacagagggaaa
cctgttgagaaatgcccattgagtggcgcctgctacagtcctgagttcaaaggacaaatc
tgtagggtcacaacggtgacagaaatcggcaaggatgtgattggattgaggatcagccct
ctgcagttacgttaa
DBGET
integrated database retrieval system
