Xenopus laevis (African clawed frog): 108701497
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Entry
108701497 CDS
T01010
Symbol
sf3b1.L
Name
(RefSeq) splicing factor 3B subunit 1-like
KO
K12828
splicing factor 3B subunit 1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108701497 (sf3b1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108701497 (sf3b1.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108701497 (sf3b1.L)
Spliceosome [BR:
xla03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
108701497 (sf3b1.L)
Complex B
108701497 (sf3b1.L)
Complex C
U2 SnRNP specific factors
108701497 (sf3b1.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
108701497 (sf3b1.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
Motif
Other DBs
NCBI-GeneID:
108701497
NCBI-ProteinID:
XP_018091737
Xenbase:
XB-GENE-17336384
UniProt:
A0A8J0TYA5
LinkDB
All DBs
Position
9_10L:94893098..94939438
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AA seq
1306 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKAALDEEEGVGLDSTGYFDQEIYGGSDSRFTGYVTSIAA
NEQEDDDDDVSSATFEQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIANREDEYKQQ
RRKMIISPERLDPFADGGKTPDPKLNARTFKDVMQEQYLTKEEREIRQQIAEKAKSGDLK
VVNGSSASSASQPPSKRKRRWDQTGDQTPGSTPKKLSSWDQAEVTPGHTPSLRWDETPGR
AKGNETPGATPGSKIWDPTPSHTPSGAATPGRGDTPGHVTPGHSGATSSARKNRWDETPK
TERDTPGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKT
PIGTPAMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPP
AGYVPIRTPARKLTATPTPLGGMTGFHMPTEDRTMKSVSDQPSGNLPFLKPDDIQYFDKL
LVDVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPL
LMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIIS
NLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSW
QARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATP
YGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQ
SPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTV
ELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILY
AFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRT
AVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLP
RLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATV
NTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRV
PELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLG
VYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMVQYCLQGLFHPA
RKVRDVYWKIYNSIYIGSQDALIAHYPRIYNDEKNTYIRYELDYIL
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaaattgcgaaaacacacgaagatattgaagcacaaatacgtgaaattcaaggg
aagaaggcagccctcgatgaagaggaaggagttggacttgattctactggatattttgat
caagaaatttatggtggtagtgatagcagatttactggatatgtcacatctatagcagca
aatgaacaagaagatgatgatgatgatgtttcatcagcaacttttgaacagaagaaacca
ggttatcatgctccagttgcattattaaatgatatccctcagtccaccgaacagtatgat
ccgtttgcagaacacagaccacagaagattgcaaatcgtgaagatgaatataaacagcaa
agaagaaagatgattatttcgcctgaaaggcttgatccttttgcagatggcggcaaaaca
ccagatcctaaattaaatgcaagaaccttcaaagatgttatgcaggaacaatatctaaca
aaggaagagcgtgaaatacgacagcaaatagcagagaaggctaaatctggggatcttaaa
gtggttaatggatcatctgcatcttctgcatcgcagccaccttctaaacgcaaacgtaga
tgggatcaaacaggggatcaaacacccggttctacaccaaagaaattatcaagctgggat
caagcggaggtcacacctggacacacaccttcgttaagatgggatgaaactccagggcgt
gcaaaaggaaacgagactcctggagcaacaccaggttcaaaaatttgggatcctacacct
agtcatacaccatctggggctgctacacctggcagaggggatactccaggtcatgtgaca
ccaggccacagtggtgcaacatccagtgcaagaaaaaatagatgggatgagactcccaaa
acggaacgtgatactcctggtcatggcagtggatgggcagaaacaccacgcacagatcgt
gggggggattctattggtgagactccaacacctggagcaagtaaaagaaaatctcgctgg
gatgaaactcctgctagtcagatgggtggtagtactccagttttgactccaggaaaaact
ccaattggcacgcctgctatgaacatggcaactccgacaccaggacacattatgagtatg
actccagaacagcttcaggcttggaggtgggagcgagaaattgatgaaagaaaccgtccc
ttatctgatgaggaattggatgccatgtttccagaaggatataaggtccttcctcctcct
gctggatacgtaccaattcgtacacctgcccgtaaattaactgcaactccaacaccatta
ggaggtatgactgggttccacatgccaacagaggataggaccatgaaaagtgttagtgac
caaccttctggcaatcttccattcctgaaacctgatgatattcagtacttcgacaaatta
ttggttgatgttgatgaatctacacttagtccagaagaacagaaagagagaaaaataatg
aaattattgttaaaaataaaaaatggtacaccgccaatgaggaaggctgccttacgacaa
ataactgataaagctcgtgaatttggagcaggtccactattcaatcagatcctgcctctg
ttgatgtcaccaacacttgaagatcaagaaagacacttgcttgttaaagttattgataga
attttgtacaaacttgatgatttggtccgcccctatgtacataagattcttgttgttatt
gaaccacttctgattgatgaagactattacgccagagtggaaggcagagaaataatctct
aatttagccaaggctgctggattagctacaatgatttcaacgatgcgaccagatattgat
aacatggatgaatacgtccgtaatacaacagctcgagcatttgcagttgttgcctctgca
cttggcattccatctctgcttccttttttgaaagccgtatgcaaaagcaaaaagtcttgg
caggctcgtcacactggaattaaaattgtgcagcaaattgccattctgatgggatgtgct
attttaccacatctaaggagtttggtggaaattattgaacatggtttggttgatgagcaa
cagaaagtccgcactatcagtgctttggctattgctgctttggcagaggcagctactcct
tatggtattgaatcatttgattccgtgctgaagcccctttggaagggaattcgacaacac
agaggaaagggtcttgccgccttcttaaaagctattggctatctaattccacttatggat
gcagaatatgcaaactactacactcgagaagtaatgttaattttgattagagaattccag
tctcctgatgaagaaatgaagaaaatcgtgttaaaggtggttaaacagtgttgtgggaca
gatggagttgaagcaaattatatcaagacagaaattctcccaccattttttaaacatttc
tggcagcatcgaatggctttggatagaagaaactacagacagttggtggataccacagtt
gaacttgcaaacaaagtgggagctgctgaaataatatcaagaattgtagacgacttaaag
gatgaagctgagcaatacaggaaaatggttatggaaaccattgagaaaataatgggaaat
ctcggagctgcagatattgatcataagcttgaggaacagcttattgatggcatcctgtat
gcattccaggagcaaacaacagaggattctgtgatgttaaatggatttggcactgttgta
aatgctcttggaaaaagagtaaagccttacctgccacaaatttgtggaacagtcttatgg
cggttgaataataaatctgctaaagtgagacagcaggctgctgacttgatatcacgtact
gcagttgtcatgaaaacttgtcaagaggaaaaactgatgggacatttgggtgttgtgttg
tatgaatatcttggagaagagtaccctgaagtactgggaagtattttaggagcacttaaa
gcaattgtcaatgttataggcatgcacaagatgacccctccaatcaaagatcttcttcca
aggttaacgcctatcctgaaaaataggcacgagaaagtacaagagaactgcattgatctt
gttggtcgtattgcagacagaggtgcagaatatgtgtcagcaagagaatggatgaggatt
tgttttgagttactggaactgctaaaggcgcataaaaaagcaattagaagagcaactgtc
aatacctttggctatattgcaaaagctattggacctcatgatgtccttgccacacttctt
aataatttgaaggttcaagagagacaaaacagagtttgcaccacagtcgcaatagctatt
gttgcagaaacctgctcaccgtttacagttttaccagcactgatgaatgaatacagagtg
ccagaactcaatgttcaaaatggtgtgttaaaatccctctctttcctttttgaatacatt
ggagaaatgggaaaggattatatttatgcagtaacaccattgctggaagatgctttaatg
gacagagatcttgtgcacagacaaacagccagtgcagttgttcagcatatgtcacttggc
gtatatggatttggatgtgaagattctctgaaccatttgctgaactatgtttggccaaat
gtgtttgaaacttcccctcatgtaatccaagctgttatgggtgcgcttgaaggcctgcga
gttgccattggtccttgtagaatggtgcagtattgcttacagggcctctttcatcctgcc
aggaaagtgagggacgtatattggaaaatatacaattcgatctatattggctcgcaagat
gccctcattgctcattatcctcgtatatataatgatgaaaagaacacatacattcgctac
gagctcgactacattttgtaa
DBGET
integrated database retrieval system
