Xenopus laevis (African clawed frog): 108701503
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Entry
108701503 CDS
T01010
Symbol
cpsf4.L
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108701503 (cpsf4.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108701503 (cpsf4.L)
03019 Messenger RNA biogenesis [BR:
xla03019
]
108701503 (cpsf4.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108701503 (cpsf4.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108701503 (cpsf4.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_3
Torus
zf-CCCH_2
zf-CCHC
zf-CCCH_12
zf-CCCH_4
zf-CCCH_RBM22
zf-CCHC_3
zf-C3H1
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
108701503
NCBI-ProteinID:
XP_018091745
Xenbase:
XB-GENE-17332920
UniProt:
A0A1L8EXA7
A0A974BZZ8
LinkDB
All DBs
Position
9_10L:complement(95622414..95631203)
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AA seq
269 aa
AA seq
DB search
MQELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHTRRVICVNYLVGFCIEGPNCKFMHPRFELPMGTTEQPP
LPQQTQIQQKQNNNQVLQRSSSLIQLTSQNSPVGQQRSPQTIGVMQSQSGNMGNRGPRPL
DQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagttaatcgcttgtgtggaccacttacggttcgatctggagctggccgtggaa
caacagctgggggctcaaccccttccattcccgggcatggacaaatctggggctgctgtt
tgtgagttttttctgaagtcggcctgtggaaaaggtggaatgtgtccgtttaggcatatc
agtggagagaagactgtagtctgtaaacattggttgcggggcctttgtaagaagggagac
cagtgtgaattcttgcatgagtatgatatgaccaaaatgcctgagtgctacttctactcc
aagtttggtgagtgcagtaacaaagagtgcccatttttgcatattgacccggaatcaaag
ataaaagactgcccatggtacgacaggggcttctgtaaacacgggcctctttgcaggcac
cggcatactcgaagagtcatttgtgtcaactacttggtgggattctgtatcgaaggccct
aactgtaaatttatgcatcctcgttttgaattacctatgggaaccaccgaacagccgcct
ctacctcagcagacacagattcagcagaagcaaaataataaccaggtgttacaaagatca
tcctcactcattcagctaacaagccagaactctcctgtcggccaacagcgttctccacag
acaatcggggtcatgcagtcacaaagcggcaacatggggaaccgggggcctaggccactg
gaccaggttacctgctataagtgtggggagaaaggacattatgccaacagatgtacaaaa
ggtcacttggctttcctgagtggacagtga
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integrated database retrieval system
