Xenopus laevis (African clawed frog): 108701859
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Entry
108701859 CDS
T01010
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108701859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108701859
Membrane trafficking [BR:
xla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108701859
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
TPR_VPS8_2
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
TPR_Vps41
zf-RING_11
zf_RING_Vps8_fungal
zf-RING_2
zf-RING_UBOX
WDR55
DUF1841
Motif
Other DBs
NCBI-GeneID:
108701859
NCBI-ProteinID:
XP_041433214
UniProt:
A0A8J1LV45
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All DBs
Position
9_10L:87340117..87420715
Genome browser
AA seq
1405 aa
AA seq
DB search
MDDDLNRSQSHLGFLDMDKEVEAKQDLIDDKEFDIPQVDTPPTLESILNETDDEEESFIP
EDPALLNVEAIDVHSCDTSSLASSDSGDRVSKRKKKLPDAFSRHGSVMHHSLLKGISAQI
VSAADKVDAGLPTAIAVSNLIAVGTSHGLALIFGKDANQALRLCLGSTAVGAQYGAVSAL
SINNDCSRLLCGFAKGQITMWDLAGGKLLRTITDAHPPGTAILHIKFTDDPTLAVCNDSG
GSVFELTFKRVMGVRTCESRCLFSGSKGEVCCIEPLHTKTELRDHPITNYSLLAMSSLTK
ILVIGLKPSLKVWMTFPYGRMDPSSVPLLAWHFVILQGALNPMLAFCRGDVVHFLLVKRD
ESGAIHIIKQKQLHLHYDLINFTWINARTVALLDSAEKLHVIDRQTQEELETLEISDVQL
VYNSSHFKSLATGGNVSQALALVGEKACYESISSYGGQIFYLGTKSVHAMTLRNWRERVD
HLLKQDCYNEALSLAWSFHEGKAKAVVGLSGDPKKRKSVVADKIVEILLQYTEKALRKCP
EQGKIQVMEQHFQDTVPVMVDYCLLLQRTDILFSQMYDKLSENCVAKGVFLECLEPYLLR
DQLPGLTAHVMKDLLLHFQDRGQMESVEACIVHMDITSLDIQNIVHMCWEHRLYDAVIYV
YNKGTNDFISPMEKLFNAISAPINSGKSLTDEQVVMGNKLLVYISSSLAGRAYPLGDIPE
DLVPLVKNQVFEFLIRLHSPEAPQEEEVYPYIRTLLHFDTREFLNVLALTFEDFTNDKQA
LEHQQRIVDILLKVMVENSDFTPSQVGCLFTFLARQLAKPDNTLFVNRMLFDQVLEFLCS
PDDDSRHSERQQVLLELLQAGGVVQFEENRLIQLAERAQFYQICEFMYERKHQYDKIIDC
YMQDPVRKQDVFNYIHNILSIPGYSSEEKEATWDKTMQHMEELVLLCPSKAAELVCTHFT
GHLEDVIGKLKDSLLVLQFLRGLLDPRDGAQVTPEVLQTLPHITELFIDLMYQYEPGQVA
PMLQILEHYRLEETIQIAQRHNHHETLAYLLEKKGDVQAAFRVMLMRLQERLSNLTSDFV
DSPGLQVMPNVKDLEETLTETILLCERTSDTLNQQQREALWFPLLEAMMSPQKLFSSSSA
QIFSEALKSLTMQVLNSMATYISLPSILQRILQDPVYGKGKLVEIQGLVLGMLDTFNYEQ
TLLETTTNLLNQDLHWSLCNLKASVTRALVPKQDYCCVCLQQYKKRQEAADEIIVFSCGH
LYHSLCLLGKDCKVEVGGQSPWICYRCNSSNKGRAGRQTVTDVKKGRTASLVQVRVSSSR
SSREEATKKSSTDPILDPQQLQAFQHLCRLYKGTSRLALVTELCRSQSPEKSSSYYASYG
GLATSSVFQNENFQLHLAPPPFFGD
NT seq
4218 nt
NT seq
+upstream
nt +downstream
nt
atggatgatgatctgaacagatctcagagtcatttgggtttcctagatatggacaaggag
gtggaagcaaaacaagacctgatagatgacaaggagtttgacattccccaggtggacacg
ccacctacacttgagagcatcttgaatgagacagatgatgaagaggagtctttcattcct
gaagatcctgctcttctcaatgtagaggcaatagatgtccattcttgtgacacatcatcc
ttggcaagctcagacagtggtgatcgtgtaagcaagagaaagaaaaagcttcctgatgcc
ttttctcgccatgggtctgtaatgcaccattcactgcttaaaggaatctctgctcaaatt
gtttcagcagctgataaagtggatgctggtttgcctactgccatagcagtgtccaatctc
attgcagttggtacttcccatggcttggccttgatatttggcaaagacgcaaatcaggcc
ctgaggctctgcctgggaagcacagcagtgggagcacaatatggagctgtctctgctctg
agtattaacaatgactgctccagattactctgtggttttgccaaaggacagattactatg
tgggacctggctggcggaaagcttttaagaaccataacagatgcccatcctcctggaact
gcaattttacatatcaagttcacagatgacccaactcttgcagtctgcaatgacagtggt
ggatccgtattcgagttaacttttaagagagtaatgggagtgcgaacctgtgagtcccgt
tgccttttcagtggatctaagggagaagtttgctgtattgaacctctgcacaccaagact
gagctacgtgatcaccctataaccaactactcattgctggcaatgtcctctctaaccaag
attctcgtgattggcttgaagccctctctgaaagtttggatgacctttccctatggacgg
atggatccttccagtgtcccactgctggcctggcactttgttatcctgcaaggagcccta
aaccccatgctggcattttgcaggggggatgtggtacatttcctcttggtgaaaagggat
gaatctggagcaattcatattattaaacagaaacaacttcatttgcactatgatcttatc
aactttacttggattaatgcccgcacagtggctcttctcgacagtgcagagaagctacac
gtgatcgatcgtcagacacaggaggaacttgagaccctggagatatccgatgtgcaactt
gtatacaacagcagccactttaagtctctggccactgggggaaatgtgagccaggccctg
gccctggtaggcgagaaagcttgctacgaatcaattagcagctatggagggcagatcttc
tacctgggaacaaagtcagtccatgccatgacactgagaaactggagagagagagttgac
catttactgaagcaggactgttataatgaggctttgtcattagcatggtcctttcatgaa
ggcaaagctaaagctgttgtgggactgtctggagacccaaagaagaggaagagtgttgta
gctgataagattgttgaaatcttactccagtatactgaaaaagcactaaggaaatgtccc
gagcaaggaaaaatccaggtgatggagcagcatttccaggatactgtgccagtaatggtg
gattactgcctcctattacagcgcacggatatcctatttagccagatgtatgacaagtta
agtgagaattgtgtggccaaaggtgtgttcttggagtgcttagaaccatatctgttacgg
gaccagttgccaggtcttactgcacatgtcatgaaggatctgctcctccatttccaggac
cgagggcagatggaaagtgttgaggcttgtattgtgcacatggatatcaccagtctggac
atacagaatattgtccacatgtgctgggagcacagactttatgatgcagtgatttatgtg
tacaacaaagggaccaatgactttattagcccaatggagaaactgttcaatgccatctct
gctcctatcaactctgggaagtcactgactgatgagcaagtcgtgatggggaacaagctg
ctggtttacatcagttctagtttggcaggacgagcatatcctttgggggacattccagaa
gaccttgtgcctttggtgaaaaatcaggtatttgagttcctgattcgtttgcactctcca
gaggccccacaggaagaggaggtgtatccatatatacgtaccctgctacactttgataca
cgggagttcctcaatgttctagccttgacttttgaagactttacaaacgataagcaagca
ttggaacatcagcaacgtattgtggatatccttctgaaggttatggtggaaaactctgac
tttactccatcccaagtgggctgcctctttactttcctagcccgacagcttgccaaaccg
gataatactctttttgtgaaccgaatgttgtttgaccaggttttagaattcctgtgtagt
ccagatgatgactcccgacattctgagcgacaacaggttcttcttgaacttcttcaggct
ggaggagttgtgcagtttgaagagaacagactgatccagctggcagaaagagcgcaattc
tatcagatttgtgagtttatgtatgagcggaaacaccagtatgataaaatcatagactgc
tacatgcaagaccctgtgaggaagcaagatgtgttcaactatattcataacatattatca
atccctggttatagtagtgaggagaaggaagccacatgggacaaaacaatgcaacacatg
gaggaactagtattgttgtgtcctagcaaagcagctgaacttgtgtgtacacactttacc
gggcatttggaagatgtcattgggaagcttaaggattcattattggttttacagtttctc
agaggtctccttgatccaagggacggagcccaggtgacccctgaagtattacaaactctt
ccccacatcacagaacttttcatagatttgatgtatcaatatgaaccaggacaagtggcc
ccaatgctgcagatactggagcactatagacttgaggagacaatacagattgcacaaaga
cacaatcatcatgaaaccttggcatatctcttggagaagaagggggacgttcaagctgcc
ttccgagtcatgcttatgagactgcaagaaaggctctccaatctgacctcagactttgtg
gattcaccaggcctccaagtaatgcccaatgtgaaagatttggaagaaactttgaccgag
actattttactgtgtgaaaggacttcagacaccctaaaccagcaacagcgagaggcatta
tggtttcctttgctagaagcaatgatgtctccacaaaagctcttcagttcttcttctgca
caaatattctccgaagcattaaaatctctgacgatgcaggttctgaacagtatggccacg
tacatctctctcccatccatcctccaaagaatccttcaggaccctgtgtatgggaagggg
aaactggttgaaatccaaggtctggttctgggaatgctagacacatttaactatgaacag
acactactggaaactactactaatctactgaaccaagacttgcactggtctctttgcaac
ttgaaggcttcagtgacccgggctctagttcccaaacaggactactgctgtgtgtgtctg
cagcaatacaagaagagacaggaagctgctgatgaaatcattgtattcagctgtggccac
ctttaccattcactttgcctcctgggcaaggactgcaaggttgaagttggaggacagagt
ccgtggatctgctatcgttgtaactcaagtaacaaaggccgtgcggggaggcagacagtg
acagatgtgaagaaaggccgaactgcatcattagtacaggtgagagtatcctcatcccga
tcatccagagaggaggccaccaagaagtcaagcaccgatcccatcctggatccacagcag
ctgcaggctttccagcatctctgccgtctctacaaaggaacctcccggttggctctcgtt
actgagctatgccgctctcagagcccagaaaaatcatcttcgtattatgcttcttatggt
ggattagctacaagtagtgtttttcagaatgaaaacttccaactacaccttgcaccgccc
cctttctttggcgactga
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integrated database retrieval system
