Xenopus laevis (African clawed frog): 108702157
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Entry
108702157 CDS
T01010
Symbol
helz.S
Name
(RefSeq) probable helicase with zinc finger domain
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108702157 (helz.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
108702157 (helz.S)
3'-5' decay
Other 3'-5' decay factors
108702157 (helz.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
zf-CCCH
AAA_19
ResIII
UvrD-helicase
PhoH
PAM2
zf_CCCH_4
zf-CCCH_4
AAA_16
AAA_7
AAA_22
AAA_5
Helicase_RecD
Mov-10_helical
Motif
Other DBs
NCBI-GeneID:
108702157
NCBI-ProteinID:
XP_018093146
Xenbase:
XB-GENE-6485951
UniProt:
A0A1L8ENJ4
A0A974BTT9
LinkDB
All DBs
Position
9_10S:complement(46417484..46475637)
Genome browser
AA seq
1929 aa
AA seq
DB search
MADRRLENFCEQACESLRRQEYEAVVSLCTEALRALSHYKTAHTNESNQTELSRIQTESL
LYRIVSFLQLKNYDQADEDCRHVLGPCRTRLDSSVHAVLCSLHLEGKLQAVSNVLSKCLA
GETLNGLVTKDLTQLKMLLAEIETVSNTVRSSYHSDDLEDGSQDGWQFRPPPRGVTSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELEEWQKRYASRLIRLKQQKENTQFSGSYMESLI
EKWMNSLSPEKVLSEYVEGVHVEYSPDLSVTVTTKKSHQTWTFLLTCKPARLLQRVALLY
DAHRPHFSIVAIAAGDSNSQVPQLVPESCQEWVGEKMAQNGLDHCIYKVAIEFTTEIFGT
FRQTIVFDFGAEPVLMQRIMVDAASTEDLEYLMQARQQLLTTAKRWDSMSKTIVEFEPNE
TTELERSLLGRYQIPLSADQLFTQSVLDKTLTKCNYQSRLHDLLYIEEIAQYKEVSKFNI
KVQLQLVASFLLTGVTGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVT
KEKSVQSQGTKEKVYEAVIEEKTKEFIFLRICKDCCEELKLKPDREMQVELQFQLNRLPL
CEMHYALDRVKDNSILFPDLSMTPPIPWSPNRQWDELLDPRLNAKQKEAILAITTPLSVQ
LPPVLIIGPYGTGKTFTLAQAVKHILKQQETRVLICTHSNSAADLYIKDYLHPYVETGNP
QARPLRVYFRNRWVKTVHPVVHQYCLISSTHAVFQMPQKEDILQHRVVVVTLSTSQYLCQ
LDLEPGFFTHILLDEAAQAMESETIMPLALANKSTRIVLAGDHMQLSPFVYSEFARERNL
HVSLLDRLYELYPVDFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPSHKDFYPL
TFFTARGEDIQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDEGSIGVVTPYADQV
FRIRAELRKKRLSEISVERVLNVQGKQFRVLFLSTVRTRHTCKHRQTPIKRKEQLLEDST
EDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWEQFITICHENKSLHGI
TFEQIKSQLEALELKKTYVLNPLAPEFIPRALRQQHSGNSSKQQQSPPKCKGHHNQNDHF
LGDGLVQPNPSVLIGNPIRAYTPPLGPHSNIGKSPSPVQRIDPHTGTSILYVPAVYGGNM
VMSVPLPVPWPSYQGRFSVDPRLMTHTAMAYNMNLLQAHGRGSPIPFGVGHHSPVNVGAP
QQPLQHPDKDQHEQLRNGKSENNQGANLNKLRTPEKKPPESKQGDMDPNAQRSPDSRGNP
TFLTPKFHRKDNPSQRHLNVHLAPPQPQFPLPNRNYQHLSQLQRPPFSIQQQNMLTQQQN
HLSELQNQIPPQPGQLVPQHNHLNQQTPQASQLSPAFPPGPNHSFFNNPMPARPHSPSVD
GMMSEQPPPPMLQDVNTLRSVPQHNPLLSSHMNNFIEESPHCMGAGDTLDRLHGNVALET
LRQQQTRIQQWNEHSAFLSQGNIPYPHHPHLQHLPQQALGIPQQQLVRPNWKIPSAEEES
EVAYSRFQEFLRELSHHDPIEGRDLSEMPPPQSRLLQYRQVQARSPPALSSPSSSHGGQY
PNFNENSRDMEMTNNPAFAQHMTHMYPLPPGHTTPPPLKYLQHDGSWTYASLAQNPLMGQ
GFHYGMSPIQHRPPQNPFIHQLQNHQQPASQESFHAPASRAVSTSSLHTLEEYEPRGPGR
PLYQRRISASSLHTGSDDLGICLESLGQRKDLEEQTNQPPFSYSSPEMWISGAPSATYQN
IPCNGSSRTVPPRDMLVAPPKMAKPPDDQLKAENMQLPASFNYNVLQHLGQFPPLMPNKQ
IVDPNGAAAMQQSVGCNKPTMSYASALRAPPRPKPPPEQAKKNSDPLSLFQELSLGSSSG
NNGFYSYFK
NT seq
5790 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagaagattggagaatttctgtgaacaagcatgtgaatctctcagaaggcaa
gagtatgaagcagtggtgtctctatgtactgaggctcttcgggccctcagccactacaaa
accgctcacaccaatgaatccaaccagacagaactcagtcggatccagactgaaagccta
ctgtacagaattgtgtcctttctgcagctgaaaaactatgatcaagcagatgaagactgc
aggcatgttctggggccatgtcgcacccggctagacagctcggttcatgcagtgctgtgc
tctttgcacctggaagggaagctgcaggctgtgtcaaatgttctgtccaaatgtctggct
ggggagactctgaatggcttggtaaccaaggatctaactcaactgaaaatgctcctggct
gaaattgagactgtcagtaacacggtccggtccagttaccatagtgatgatctggaagat
gggtcccaagatggatggcagttccgcccccctccccggggtgtgacgagcagcgaggaa
tacacgttatgtaagaggttcctggagcaggggatttgcaggtacggagcacagtgcact
tccgcgcactcccaggaagagttggaggaatggcagaaacgctacgcctcacgcctcatc
cgactcaagcagcagaaggaaaacacccagttttctggcagctatatggaaagtttaata
gaaaaatggatgaactcattgtcaccagagaaagtgctcagcgagtacgtggaaggagtg
catgtggagtacagtcctgacctctctgtcactgtcaccaccaaaaagtcacatcaaaca
tggacctttcttctcacttgtaagcctgcacgactcctacagcgggtggcgctcctctat
gatgcacacagacctcatttcagtattgttgcaatagctgctggagacagcaactctcaa
gtaccccagctagtcccagaaagttgccaggaatgggtgggagagaagatggcacagaac
gggttggaccattgcatatacaaagtagcgatagaatttaccacagagatctttggaact
ttccggcaaacgattgtgttcgactttggtgcagagcccgttcttatgcagagaataatg
gtggatgctgcatccactgaagaccttgaatacttgatgcaagctcggcagcagctgcta
acgacagccaaacgctgggattccatgtcaaagactattgtagagtttgaacccaatgaa
actactgaattggaaaggagcttgcttggccgataccaaattcccctctctgctgatcag
ttgtttacacagtctgtcctggacaaaaccctgaccaagtgcaactatcagtctcgctta
cacgacttgctctacatcgaggagattgcacagtacaaggaggttagcaagtttaatatc
aaggtgcagctgcagctggtagcaagcttcttgctgactggtgtaactggaggtgcaaaa
tatgcccagaatggacagctctttggacgctttaaactcactgagacactttctgaagat
actttggctgggagactggtaatgaccaaagtgaatgctgtatatttgctgcctgtcaca
aaggagaaatcggttcagagccagggcaccaaagagaaggtttatgaggcggttatcgag
gagaaaaccaaggagtttattttcctgagaatatgcaaggactgctgtgaagagctcaag
ctcaaacctgatcgggagatgcaggttgagcttcagttccagctgaataggcttcccctc
tgtgaaatgcactatgccttggacagagtcaaggacaacagcatcctgtttccagatctg
agcatgactccacctataccgtggagtcccaacaggcagtgggatgagttgctggacccc
cggctaaatgcaaagcagaaggaagcgatcttggccatcaccacccccctttctgtacaa
cttcctcctgtcctcattattggcccatatgggaccggcaaaactttcacgctggctcaa
gccgtaaagcacatcctaaaacagcaagagaccagggttcttatctgcacccattccaac
agtgctgctgacctctacatcaaggattacttgcatccttacgttgaaacagggaatccc
caagccagaccactcagggtatatttccgaaatcgctgggtaaagactgtccacccagtg
gtgcaccagtactgtctgatatccagcacgcatgctgtctttcagatgccccagaaggag
gatatactgcaacaccgggtggtggtggttacactgagcacgtctcaatacctatgccag
ttggatctagaacccgggtttttcacacatatcctgttagatgaagcggcacaagccatg
gagagtgagactattatgcccctcgcattggcaaacaaaagtacaaggatcgttctggct
ggagaccacatgcagctcagcccatttgtgtacagcgaatttgccagagagaggaacctg
cacgtctcattacttgaccgactgtatgaactgtaccctgtagactttccctgtcgtatt
ctgctgtgtgagaattaccgttcacatgaagccatcataaactacacctcagagctattc
tatgagggcaaactgatggccagtggcaagcaaccctcgcacaaagacttctaccctcta
actttcttcacagcacgtggggaggacatacaagagaagaacagcactgctttttacaat
aacgcagaggtatttgaagtagtggagcgtgtggaagagttacggaggaaatggcctgtg
gcctggggcaaattggacgagggcagcattggagtggtaacaccatacgcagaccaagtt
ttcaggattcgtgcagagcttcggaaaaaacgcctgtcagaaatcagtgtggaaagagtg
ttgaatgttcaggggaaacagttccgggtcctattcctcagtacagtccgaacgcgacac
acatgcaaacacagacagactccaatcaagaggaaggaacagctcctggaagattccacc
gaagatttggattatggtttcctctccaattataaactactcaacaccgccattacccgt
gcccagtccctggtggctgtggtgggcgatcccattgctttatgctctattggaaggtgc
aggaagttttgggagcaatttatcaccatatgccatgaaaataaaagccttcacggcatt
accttcgagcagatcaaatcccagctagaggccttagagctgaagaaaacatatgtgctc
aatccactggctcctgaattcattccccgggccctccgacagcagcactcaggaaattct
tctaagcagcagcagtcacccccaaagtgtaaggggcaccacaatcagaatgaccacttt
ctaggagacggactagttcagccaaacccctctgttttgattggcaatcctatccgggcc
tacacaccaccactgggcccacactccaacataggaaagtctcctagtcctgtgcagaga
attgatccacacaccggcaccagtattctttatgtgcctgccgtctatggaggaaacatg
gtcatgtctgtgcctttacctgtaccgtggcccagttatcagggcaggttttctgttgac
cctcggcttatgacacacacagctatggcgtataacatgaacctcctccaggcacatggc
cgcggctcccccatcccatttggcgttggtcatcattctcctgtcaacgttggggccccc
cagcaaccccttcagcacccagacaaagatcaacatgagcagcttcgtaatggtaaaagc
gaaaacaatcaaggagcaaatctgaataagcttcgtactccagagaaaaagcctccagaa
tctaagcagggtgacatggacccaaatgcacagagaagtccagattccagaggaaacccc
acttttcttactcctaaatttcatcgtaaagataatcccagtcagagacacctgaatgtt
cacctggcccccccacagccgcagttccctttgccaaatcggaactaccagcacctctcc
cagctccagaggccaccattttccatacagcagcagaacatgcttactcagcaacagaac
catttatctgaactacaaaaccaaatacctccacagccaggccagttagtcccacagcat
aaccatttaaatcagcagacgccacaagcctcgcagctttctcctgctttccctcctgga
cccaatcactcattctttaataaccctatgcctgctcgacctcattctccaagtgtagat
ggaatgatgtctgaacagccacctcctcccatgcttcaagatgtcaacactcttcggtct
gttccccagcataacccactgctctcatcacatatgaataattttatcgaagagagccct
cactgcatgggtgctggtgacacgctggatcgtttacatggcaacgtggccttggaaaca
ttaaggcaacagcagacacgaatacagcaatggaatgaacacagtgctttcctcagtcaa
ggcaacatcccctacccacaccaccctcacctgcagcatcttcctcagcaagcattgggg
atcccccaacagcaactagtgcgaccaaactggaagatccccagtgctgaggaggaatct
gaagtggcttactcaaggtttcaggagtttttacgagagctttcgcatcatgatcccatc
gaaggcagagacctatcggaaatgccacccccccaatccagactgttacagtacaggcag
gtccaggccagaagcccaccagcactatcatccccttcctctagccatggtggccagtac
ccgaactttaatgaaaatagccgagacatggagatgaccaacaacccagcatttgcccag
cacatgacacacatgtatcccttgccacctggacacacaacacccccacccctcaaatac
ctgcaacatgatggatcatggacctatgctagccttgctcaaaatcccttaatgggacaa
ggatttcattatggcatgtcccctattcagcacagacccccacagaacccattcatacat
cagttacagaaccatcagcagccagccagtcaggaatcatttcatgcacctgcatctcga
gcagtatccacctcttcactccacaccctagaagagtatgagcctagaggacctgggagg
ccgttgtaccaaagaagaatttctgcaagctcactacatactggttccgatgatttaggc
atctgtctggagagccttgggcaacgtaaggatctagaagagcagactaaccaaccccca
ttcagctactcgtccccagagatgtggatcagtggcgcaccttctgctacctaccagaac
attccatgcaatggatccagcagaacagtaccacccagggacatgttagttgctccacca
aaaatggcgaaacctccggacgaccagctgaaagcagaaaacatgcagctccctgcttca
ttcaactacaatgtcttgcagcacctcggccagttcccgccgctcatgcccaacaaacag
attgtagatccgaatggcgcagcagccatgcagcaaagtgtcggctgcaacaaacccacc
atgtcttatgccagcgccctgcgcgctccacccaggcccaagccccctccagagcaggca
aaaaaaaatagtgaccctttgtctttgtttcaggaactaagcctaggcagttcatcaggt
aataatggcttttactcctattttaaataa
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integrated database retrieval system
