Xenopus laevis (African clawed frog): 108702660
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Entry
108702660 CDS
T01010
Symbol
prpf6.S
Name
(RefSeq) pre-mRNA-processing factor 6
KO
K12855
pre-mRNA-processing factor 6
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108702660 (prpf6.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108702660 (prpf6.S)
Spliceosome [BR:
xla03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108702660 (prpf6.S)
Complex C
U5 SnRNP specific factors
108702660 (prpf6.S)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
TPR_16
HAT_Syf1_CNRKL1_N
TPR_17
TPR_2
TPR_8
TPR_1
FAT
ARM_TT21_2nd
TPR_CcmH_CycH
TPR_9
ARM_TT21_C
TPR_21
T7SS_EccA1_N
TPR_12
Motif
Other DBs
NCBI-GeneID:
108702660
NCBI-ProteinID:
XP_018093755
Xenbase:
XB-GENE-17343407
UniProt:
A0A1L8ELX8
A0A974BT50
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All DBs
Position
9_10S:complement(17294143..17303831)
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AA seq
972 aa
AA seq
DB search
MAASTSAGSGAGPSGSGNPAGASGLTAAITGTMNKKKKPFLGMAAPLGYVPGLGRGATGF
TTRSDIGPARDANDPVDDRHAPPGKRTVGDQMKKNQADDDDEDLNDTNYDEFNGYAGSLF
SSGPYEKDDEEADAIYAALDKRMDERRKERREQREKEEIEKYRMERPKIQQQFSDLKRKL
AEVTEEEWLSIPEVGDARNKRQRNPRHEKLTPVPDSFFAKHLQTGENHTSVDPRQAQFGG
LNSPFPGGLNSPYPGGMTPGLMTPGTGDLDMRKIGQARNTLMDMRLSQVSDSVSGQTVVD
PKGYLTDLNSMIPTHGGDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVAR
NLIMKGTEMCPKSEDVWLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDLRAK
KRVLRKALEHVPNSVRLWKAAVELEEPEDARIMLSRAVECCPTNVELWLALARLETYENA
RKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEINREQWIQD
AEECDKAGSVVTCQAVIRAVIGIGIEEEDRKHTWMEDADSCVSHSALECARAIYAHSLQV
FPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARS
ILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLG
NIEAAQDLCEEALRHYEEFPKLWMMKGQIEEQMEQTEKARDAYNQGLKKCPHSTPLWLLL
SHLEEKVGQLTRARAILEKSRLKNPKTPELWLESVRLEFRAGLKNIANTLMAKALQECPN
SGILWAEAVFLEARPQRKTKSVDALKKCEHDPHVLLAVAKLFWSERKITKAREWFHRTVK
IDSDLGDAWATFYKFELQHGTEEQQEEIRKRCENAEPRHGELWCAGSKDIKNWQQKIGEI
LVLVAAQIKNTF
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctccacatctgcaggaagcggcgcggggccctcgggctctggaaacccagcc
ggtgcctcgggactgaccgcagctatcaccggcactatgaataagaagaagaaaccgttc
cttgggatggcggcaccgctcggatatgtaccgggcctgggtcgaggtgccactggcttc
acaacccgttcagatattggtcctgctcgtgatgccaatgacccggtggatgaccgccat
gcccctccgggaaagagaactgtgggggaccagatgaagaagaaccaagcagatgatgat
gatgaagacttgaatgatacaaattatgatgagttcaatggctacgctgggagcttgttt
tctagcggcccctatgagaaggacgatgaggaagcagatgccatatacgcagccctggat
aagcgtatggacgagaggcgaaaggagagaagggagcagagagaaaaggaggaaattgag
aaatatcgtatggagagacccaagatccagcagcagttctctgacctgaagaggaagctg
gcagaagtgacagaagaagagtggctgagcatccctgaggtgggagatgcacgtaataag
cgccagagaaacccacggcatgaaaagctaacgcctgttcccgacagcttctttgcaaag
catttacagacaggggagaaccacacgtcagttgatccacgtcaggcgcaatttggaggt
ttaaactcccctttcccaggaggactgaattctccataccctggcgggatgactccgggg
ctaatgactcctggtactggggatctggacatgaggaagattggacaggccaggaacaca
ctaatggacatgagactgagccaggtgtccgactctgtaagtggtcagactgtggttgac
cccaaaggttatctgactgacctgaattctatgatcccaacccacggaggagatatcaat
gatattaaaaaagcccgtctacttctgaagtctgtaagagaaacaaaccctcatcaccct
ccagcctggatcgcttctgcccgtcttgaggaggtgactggcaaattacaagtagctcga
aacctcatcatgaaaggaacagagatgtgtcccaagagtgaagatgtctggctggaggct
gctcgattacagcccggggacactgccaaggctgtggtagcacaagctgtgcgtcacctc
ccacagtctgtgagaatctatatccgagcagcagagctggagaccgatcttcgagcaaag
aaacgtgtcctgagaaaagctctggagcatgtccctaactctgtccgtctgtggaaagct
gccgtggagttggaggagccagaggatgcccgaatcatgttgagccgtgccgttgagtgt
tgcccaaccaatgtggagttatggctggctttggctaggttggagacctatgaaaatgcc
cgtaaagttctgaacaaagctcgggagaacattcccacagacagacatatttggatcaca
gctgccaagctggaagaggccaatgggaacacacagatggtggagaagattatagacaga
gcaatcacatctctgagagccaacggagtagaaatcaaccgtgagcaatggatacaggat
gctgaggagtgtgacaaggctggcagcgtagtaacatgtcaggcagtcatcagggctgta
attggcatcggaatagaagaggaggatcggaagcacacatggatggaggatgctgacagt
tgtgtctctcacagtgccttggagtgtgccagggctatctatgcccactcccttcaagtt
ttccccagcaagaagagtgtgtggctgagggctgcttattttgagaagaaccatggtaca
agggagtctctggaagcactcttgcagcgtgcagttgcccactgtcctaaagcagaagtg
ttgtggttgatgggagccaagtccaagtggctcgcaggcgatgtaccggctgccagaagt
atccttgccctggctttccaggccaatcccaacagtgaagagatctggttagccgccgtg
aaattggagtctgaaaacaatgagtatgagcgagctcgtcgactgttggccaaggctcgg
agcagtgcacctactgccagggtgttcatgaaatctgtaaagctggaatgggttttgggg
aacattgaagcagctcaggatctctgtgaggaagccctacgtcactatgaggagttcccc
aaactgtggatgatgaagggacagattgaagagcaaatggaacagactgaaaaggccaga
gatgcttataaccaagggttgaagaagtgtccccattctacgcctttgtggttactcctg
tctcatctggaggagaaggttggccagctgacacgagccagggctatcctggagaagtct
cgtctgaaaaacccaaagactccagagctgtggcttgaatctgtgcgtctggagttccga
gctggtctaaagaacattgccaataccctgatggctaaagctctgcaagaatgtcccaac
tcaggaattctttgggcagaagcagttttccttgaagccaggccccagcgcaagacaaag
agtgttgatgctctgaagaagtgtgagcatgatccacatgtgctgctggcagttgctaag
ctcttctggagtgaacgcaaaattacaaaagctcgggaatggtttcaccgaactgtgaaa
attgactcggacctaggggacgcctgggcaaccttctataagtttgaactgcagcacggt
acagaggagcagcaagaggagatcagaaagcgttgtgaaaacgcagaaccacgccatggg
gagctttggtgtgcagggtccaaagatataaagaactggcagcagaagataggggagatc
cttgtcctggtggcagctcaaatcaagaacacgttctga
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