Xenopus laevis (African clawed frog): 108702698
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Entry
108702698 CDS
T01010
Symbol
cpsf4l.S
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108702698 (cpsf4l.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108702698 (cpsf4l.S)
03019 Messenger RNA biogenesis [BR:
xla03019
]
108702698 (cpsf4l.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108702698 (cpsf4l.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108702698 (cpsf4l.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_3
zf-CCCH_4
zf-CCHC
Nab2-like_zf-CCCH_
Motif
Other DBs
NCBI-GeneID:
108702698
NCBI-ProteinID:
XP_018093805
Xenbase:
XB-GENE-6488296
UniProt:
A0A974BTL2
A0A1L8EM14
LinkDB
All DBs
Position
9_10S:complement(20804436..20831487)
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AA seq
269 aa
AA seq
DB search
MQELIASIEKFSFDLEKDIEGQRGALLLPFHGMDKSGAAVCDFFVKGVCRKGPMCPFRHL
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMGRMPECYFYSKFGECSNKDCPFLHIDPASK
VKDCPWYDRGFCKHGPACKHRHTRRVMCTNYLVGFCPDGPKCKYVHPKADLVLCNTDHPK
NTTVQQRLPATSLHCDLETIAKHQGLMFDHSRLSHLTVISMVQERIRKLQENVYGGLRPL
EQVTCFKCGERGHYANKCNRSRLAFLMRK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaactcattgcaagcatagagaagttcagcttcgaccttgagaaagatattgaa
ggtcagcggggtgcactgctgctgcctttccatggcatggataaatccggagcagctgtg
tgcgatttctttgtgaaaggggtatgcaggaaaggtcccatgtgtccattccggcacctg
agtggagaaaagactgtagtctgcaagcactggctcaggggtctgtgcaaaaaaggcgat
cagtgtgaattccttcatgagtatgatatgggccgcatgcctgaatgttacttctactct
aaatttggagaatgcagcaataaggactgccccttcttacacattgaccctgcatctaaa
gtgaaggattgtccatggtatgacagaggattctgcaagcatgggccagcgtgcaagcac
cggcatactcgcagagtcatgtgtacaaactacctggttggtttctgtccagatggcccc
aagtgtaaatatgtacaccctaaagctgacttggttctgtgcaatacggaccatccgaag
aatacaactgttcagcagagattacctgctacgtctttgcattgtgacctggagaccata
gcaaagcaccaaggactgatgtttgaccattctcgcctgtcacaccttacagtgatcagc
atggtgcaggagcgcatccggaaactgcaggagaacgtctatggtggactgagacctctg
gagcaagttacctgctttaagtgtggagaaagaggtcactacgccaacaagtgcaacaga
agccgtcttgccttcctgatgagaaaataa
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integrated database retrieval system
