Xenopus laevis (African clawed frog): 108703535
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Entry
108703535 CDS
T01010
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 3-like isoform X1
KO
K11642
chromodomain-helicase-DNA-binding protein 3 [EC:5.6.2.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108703535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108703535
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
108703535
Chromatin remodeling factors
NuRD complex
108703535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
ResIII
HDA2-3
HMG_box
DEAD
AAA_22
PHD_2
Motif
Other DBs
NCBI-GeneID:
108703535
NCBI-ProteinID:
XP_041444882
UniProt:
A0A8J1MSY6
LinkDB
All DBs
Position
3S:complement(128395120..128441964)
Genome browser
AA seq
2027 aa
AA seq
DB search
MSSPLRDDEEEEEEEMAVSEEGDGEKEEDDEDEGAEEEERDEDDEAQATRSRHCSPSFYF
PPTASREPGSVETDYTPPPTVPAAADQDEDNVSPVPSPQEPVTKKKRGPKKKIKDKVKIP
KAIKPRKRRKPDSDEDLRWDEGIGDQASPDSDSELGGKKRKKKHKEKKEKKTKKRKKEEE
VVVQRKVEQKSSAALLSSWGLEDVDYVFTDEDYHTLTNYKAFSQFMRPLIAKKNPKIPMS
KMMTILGAKWREFSANNPFKSSPAAVAAVAAAAAAAVAEQVTPVALSTMVTVTQVLPMRR
AKTKEGKGPGHKKPSKSPRAAEPKKATKRKMAPLKIRLAGVKRKTGSSSEEMDVCEASDL
ENSSVHSSSAPSDSSGRVKRKRGRPARRKKKVAVAVEEGVSTGEGYETDHQDYCEVCQQG
GEIILCDTCPRAYHLVCLEPELERAPQGKWSCPHCEKEGVQWEAKELEEEEMEDRKRERR
EEEDDHMEFCRVCKDGGELLCCDACVSSYHIHCLNPPLPDIPHGEWLCPRCTCPQLKGRV
QKILHWRWGVPPEGVPPPPQPQDGAQDEDPPRALQGRSEREFFVKWAGMSYWHCSWITEL
QLEIFHTVMYRNFQRKNDMDEPPPFDYGSGEDEGKSEKSKDAAYSDLEERFYRYGIKPEW
MSVQRIINHSVDKRGNYHYLVKWRDLSYDQSTWEEDAMKLPDYEYHKQMYWRHRELIMGD
SACCPHKHKRQHKESYLDGAPRSPINDPTVKYETQPQFVSSTGGTLHMYQLEGLNWLRFS
WAQGTDTILADEMGLGKTIQTIVFLNSLYKEGHTRGPFLVSAPLSTIINWEREFQMWAPD
FYVVTYTGDKDSRAVIRENEFSYQDNVMKGGKKAFKMKAQAQVKFHVLLTSYELVTIDQA
ALGSIRWACLVVDEAHRLKNNQSKFFRVLNGYQIDYKLLLTGTPLQNNLEELFHLLNFLT
PVRFNNLEGFLEEFADISKEDQIKKLHDLLGPHLLRRMKADVFKNMPAKTELIVRVELSP
MQKKYYKFILTRNFDALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPAASLESPILPSGAY
EGGSLVKASGKLLLLQKMLRKLNEQGHRVLIFSQMTKMLDLLEDFLDFEGYKYERIDGGI
TGALRQEAIDRFNAPGAPQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRA
HRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKAGSMSKQELDDILK
FGTEELFKVENEGDNKEEDSSVIHYDNGAVERLLDRNQDVTEDTEVQNMNEYLSSFKVAQ
YVVKEEEKLEELEREVIKQEENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRVRKQVNYN
DAAQEDQDNQSEYSVGSEEEDEDFDERAEGRRQSRRQLRNEKDKPLPPLLARVGGNIEVL
GFNTRQRKAFLNAVMRWGMPPQDAFSTHWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADG
SETFADGVPREGLSRQQVLTRIGVMSLVKKKIQEFEHINGRWSMPELMPDPSLDSKLSSR
ASSPTVKTSTTTPEQSLTNTPCTSKPATPAPSERGENGGTPVEKGEAECKEEKESDVKGT
EKKEIEPEQTATVRTPSPKDSGTPVCNSESEKSGEKLTETPDVTPGKEEAKAELTAETVG
DKTAAAAPEPEKPTEVTSEAAPREEVKQEREAVKDGKMNIQKEEVRSSNGRREENRPERA
RFMFNIADGGFTELHTLWQNEERAAVCSGRLNDIWHRRHDYWLLAGIVIHGYARWQDIQN
DAPFAVINEPFKSEANKGNFLEMKNKFLARRFKLLEQALVIEEQLRRAAYLNMTQDPTHP
AMALNARFSELECLAESHQHLSKESIAGNKPANAVLHKVLNQLEELLSDMKADVTRLPAS
LARIPPIAARLQMSERSILSRLASKGSESTAPPVFPPGPYTTPPMFGATFPSNPQSAALS
GTNYNQMPMGSFLSVSNGPPVLVKKEREMDLLDRKESRGGEVICIDD
NT seq
6084 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgccgctcagggacgacgaggaagaggaggaagaagaaatggccgtgtccgaa
gaaggggacggcgagaaggaggaggatgatgaagatgaaggcgcggaggaggaggaaaga
gatgaagacgacgaagctcaggcgacacgaagccgccattgcagccccagcttctatttc
ccgccaacagcctccagggagccggggagtgttgaaaccgattacacaccaccgccgacc
gttccagctgccgcagatcaggatgaggacaatgtatctcctgtgccttctccccaagaa
cccgttacaaagaagaagagaggacctaagaagaaaataaaagacaaagtgaaaatacca
aaggccattaaacctcgcaagcgcagaaagccagacagtgatgaagacttgcgctgggat
gagggtattggggatcaagcctctcctgacagtgacagtgagcttggtggaaagaagaga
aagaagaaacacaaagaaaagaaggaaaagaaaaccaaaaaaaggaaaaaagaagaggag
gtggtggtacagcgcaaggtggaacaaaagtcctcagcagcactcttgtccagttggggt
ttagaggatgtagattatgtcttcacagatgaagattatcatacactgaccaactacaag
gccttcagccagtttatgaggcctctcattgctaagaagaatcccaagattcccatgtcc
aagatgatgacaattctaggtgccaagtggcgagaattcagcgcaaacaaccctttcaaa
tcctcacccgcggcagtggcagccgttgcagcagcagccgcagcagcagtcgctgagcaa
gtaactcctgtggccctctccactatggtcactgttactcaggtgttgccaatgcgcaga
gccaagactaaggagggaaaaggacctgggcataagaagccgagcaagagcccacgagcg
gcagagccaaagaaggctaccaaaaggaaaatggcgcctctgaagatcaggctggcaggt
gtgaagcgcaagactggcagttctagtgaagagatggatgtctgtgaggcatcagacttg
gagaactcaagtgtccacagctcgtcggctccttccgacagctctggaagagtaaagagg
aaaagaggaagacctgcaaggagaaagaagaaggttgcagttgcagtggaggagggggtg
tctacaggtgaaggctatgagactgaccatcaagattactgtgaagtctgtcagcaggga
ggtgagattatcctgtgtgacacatgcccgagagcatatcacctggtgtgcctggaaccg
gaactagaacgggcaccacagggcaagtggagttgcccccactgtgagaaggaaggagtg
cagtgggaagccaaggagctggaagaagaagagatggaagatcgcaaaagggagaggcgg
gaggaggaggatgaccacatggagttctgccgtgtttgtaaagatggaggggagctgttg
tgctgcgatgcttgtgtgtcctcctatcacatccactgcctgaaccctccactgcctgat
attccacacggagagtggctctgtccacgctgcacgtgcccacagctgaagggcagagtg
cagaagatcctgcactggcgctggggggtacccccggaaggagtgccgcctcctcctcag
cctcaagatggggcacaagacgaggatccgcctcgggccttgcaagggagatcagagagg
gagttctttgtgaagtgggcaggaatgtcgtactggcactgcagctggataacagagcta
cagctggagatctttcacacagtcatgtaccgcaacttccagcggaagaacgacatggac
gagcctcctccctttgattacggttccggggaggacgagggcaagagcgaaaaaagcaag
gatgccgcctactccgatttggaggaacgattttaccgttatggcataaaaccggagtgg
atgtctgtccagagaatcatcaaccacagtgtggataagaggggtaactaccactacctg
gtgaagtggcgagacctgtcatacgatcagtccacgtgggaggaggatgccatgaagctg
cccgactatgaataccacaagcagatgtactggagacacagggaactgatcatgggggat
agtgcttgctgccctcacaaacacaagaggcaacataaggaatcctacttagacggagcc
cccaggtctcccattaatgaccctacagtcaagtatgagacccaaccccagtttgtatcg
agcacagggggcacactgcatatgtaccagctggagggactgaactggctgcgattctca
tgggcgcagggcactgataccatcctggcagatgagatgggacttggaaagacgatacaa
accatcgtgtttctgaactccctctataaagagggacacacgaggggaccgtttcttgtc
agcgcccctctttccaccatcattaactgggagcgcgagttccaaatgtgggcccccgat
ttctacgtggtgacgtacaccggcgataaagacagtcgagcggtcatcagagagaacgag
ttttcctaccaggacaatgtcatgaaaggggggaagaaagcgtttaagatgaaggctcag
gcccaggtgaagtttcatgttctcctcacctcctatgaactagtcaccattgaccaggct
gctctgggatctattcgttgggcctgcctggtggtggacgaagctcaccgactgaagaat
aaccagtccaagtttttccgggttttaaatggataccagatcgattacaaactgctccta
acaggaacccccctgcagaataatctggaagaactgttccatctgctcaacttcctcacc
cctgtgagattcaacaacctggaagggttcctggaggaatttgcagacatttccaaggaa
gaccagatcaagaaactgcacgacctcttggggcctcaccttttgcgccggatgaaggcc
gacgtgttcaagaacatgccggccaaaacggagctgattgttcgtgtagagctcagccca
atgcagaagaaatactataaattcatcctcacccgtaactttgatgctttgaactcaagg
ggaggagggaaccaagtgtctcttctaaacatcatgatggacctgaagaaatgttgtaac
cacccgtatctcttcccagcggcttcattggagtccccaatactgcccagcggtgcctat
gaaggagggtcgcttgttaaagcttcggggaaactgctccttttacagaagatgctccgg
aagctgaacgagcaggggcaccgcgttctgatattctctcagatgacgaagatgctggat
ctcctggaggacttcctggattttgagggctataaatatgagcggatagacggcggcatt
acgggtgccttgaggcaggaggctatcgaccgatttaatgctccaggcgctccgcagttt
tgtttcctcctctccacccgcgctggaggactcggtattaacctcgctacggccgacacg
gttatcatatatgattctgattggaacccccataatgacatccaggcattcagccgtgct
cataggattggacaggccaacaaggtgatgatttaccgctttgtgacgcgggcgtcggtg
gaagagcggataacacaggtggccaaaagaaagatgatgttgacccacttggtggtgcgg
ccgggcctgggttccaaggcaggttccatgtccaagcaggaactggatgatatcctcaaa
tttggaacggaggagctgtttaaagttgagaatgaaggtgataataaggaagaggacagc
agtgtgatccattatgataacggggcagtcgaacggctgctggaccgcaatcaggatgta
acagaggacacggaggttcagaacatgaacgagtatctcagctcctttaaagtggctcag
tatgtcgtaaaggaagaggagaagctggaagaactggaaagggaggtgattaagcaggag
gagaatgtggatcccgactattgggagaagctgctgaggcaccactatgagcagcagcag
gaagacctggcacggaacctcggcaaggggaagagagtgcgcaagcaggtcaactacaat
gatgccgcacaggaagaccaggacaaccagtctgaatactccgtgggctcggaggaggag
gatgaagattttgacgagagggcggaaggacgcaggcagtctcgccgccaactacgaaat
gagaaggacaagcctctgccacctctgctggctcgggttggtgggaacatagaggtcctg
gggttcaacacacggcagaggaaggctttcttaaatgcagtgatgcgctgggggatgcca
ccacaggatgccttttctactcactggctagtgagggatctgagaggcaagtcggagaag
gagttcaaagcgtacgtgtctctgtttatgagacatctctgtgagcctggagccgacggt
tcagagacgtttgctgacggtgttccccgcgaaggcctctcgcgacagcaggttctgacc
cgcatcggcgttatgtctttggtgaagaaaaagatacaggagtttgagcatataaacggt
cgatggagcatgccggagctgatgccagaccctagcctagactccaagctctcgtctcga
gcctcctctcccactgtaaaaacctccaccaccactccagagcaaagcctcaccaacacc
ccatgcacctccaaaccagctacacctgcccccagcgagcggggtgagaatgggggaacc
ccagtggaaaaaggagaagcggaatgcaaggaggagaaggaaagtgatgtgaagggaacg
gagaagaaagagattgagcctgagcaaacagctactgtgaggactcccagccccaaggat
tccgggacccctgtgtgtaattcggagtcggagaaaagcggagagaagctgacagaaact
cctgatgttactcctgggaaggaggaagcgaaggcagaattaactgcagagacagttggc
gacaaaactgcagctgctgctcctgagcctgagaaaccaacagaagttacatcagaagca
gcaccgagagaggaggtgaagcaggagcgagaggcagtgaaagacggcaagatgaatatc
cagaaggaagaagtgaggagcagtaatggaaggagagaagagaacagaccagaaagagcc
agatttatgttcaacattgcagatggggggttcacagagctccacaccttgtggcagaac
gaggaaagagccgccgtctgctccggccgattgaacgacatctggcaccgccggcacgat
tactggttattagccggcattgtgatacatggctacgctcgctggcaagacattcagaac
gatgcgccatttgccgtcattaatgaaccctttaaatctgaggccaataagggaaatttc
ctggagatgaagaacaagttcctggcacgacgattcaagctcctggaacaggctctagtg
attgaggagcagctccggagagcagcctatctcaacatgacccaggaccctacccacccg
gccatggcccttaacgctcgcttctccgagttggaatgtctcgcagagagtcaccagcac
ctctccaaggagtccattgcagggaacaagccagccaatgccgtgctccataaagtgctc
aaccaattggaggagctgctgagtgatatgaaggcggacgtaactcgcctccccgcctcc
ctcgcacgtatcccgcccatcgcggcaagactgcagatgtcagagcgcagtatcctgagc
cgactcgcaagcaaggggagcgagagcacagctcctccggtgttccctcctggcccttac
accactcctcctatgtttggggccacattcccaagcaacccccagtcggcagcactctcg
gggacaaactataatcagatgcctatgggctctttcctgtctgtttctaatgggccccct
gttcttgtgaaaaaggaacgagagatggatttgctggacagaaaggaaagcagaggtgga
gaggtgatctgtattgatgactga
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integrated database retrieval system
