KEGG   Xenopus laevis (African clawed frog): 108703583
Entry
108703583         CDS       T01010                                 
Symbol
polr2a.S
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03020  RNA polymerase
xla03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    108703583 (polr2a.S)
  09124 Replication and repair
   03420 Nucleotide excision repair
    108703583 (polr2a.S)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:xla03021]
    108703583 (polr2a.S)
   03400 DNA repair and recombination proteins [BR:xla03400]
    108703583 (polr2a.S)
Enzymes [BR:xla01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     108703583 (polr2a.S)
Transcription machinery [BR:xla03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     108703583 (polr2a.S)
DNA repair and recombination proteins [BR:xla03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      108703583 (polr2a.S)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 108703583
NCBI-ProteinID: XP_018095283
Xenbase: XB-GENE-17343962
UniProt: A0A8J0U2K7
LinkDB
Position
3S:131886905..131901961
AA seq 1968 aa
MHGAPSGDSACPLRTIKRVQFGVIGPDELKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVYHVGFLVKTMKVLRCVCFFCSKLLVDAN
NPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRF
ARPEWLIITVLPVPPLCVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNEIPGLPRAMQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMSFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINC
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELVMGILCKKSLGTSAGSLVHISYLEMGH
DTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKDILSDAHVQNELEKEFEKMKED
REVLRVIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVDGVRELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLSSRRMIEEFRLSGEAFDWLLGEIESKFNQAIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIL
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNIPGLGGGGPTGMF
FGTAPSPMGGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPSYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq 5907 nt   +upstreamnt  +downstreamnt
atgcacggggctccctccggggatagcgcctgtccgctacggaccatcaaacgggtccag
ttcggcgtcatcgggcctgacgagttgaaacggatgtctgtaacagaaggtggaattaaa
tactcggagacaacagagggcggtcgccccaagcttggaggattgatggaccccaggcag
ggcgtcattgagaggagtgggagatgtcagacatgtgcaggtaacatgactgaatgtccc
ggccacttcgggcacattgaattggccaaaccagtctatcatgttggatttttggtcaag
accatgaaagtgttgagatgtgtgtgcttcttctgctccaagcttctggttgatgctaac
aacccaaagattaaggacatcctaataaagtccaaagggcaacccaagaagcgactgacc
cacgtgtatgagttgtgcaaggggaaaaacatttgtgaggggggagaagagatggacaac
aagtttggggtggagcagactgagggtgatgaggacattcagaaagaaaagggacacggt
ggctgtggccgctaccaaccgcgtattcgccgcactgggctggagctctatgccgagtgg
aaacacgtaaacgaggattcccaggagaagaaaatcttgctgagtcctgagcgtgtgcac
gagatcttcaagcgaatcacagatgaggaatgcttcattttgggaatggacccccgattt
gcacgtcctgagtggctcattatcactgtcctgcctgtgccccccctgtgtgtgagacca
gcagtcgtaatgcagggctcggccaggaatcaggatgacttgacacacaaactggctgat
attgtgaagattaataatcaactccggagaaatgagcagaatggagccgcagcccacgtc
atagcagaggatgtaaagctgcttcagttccacgtggccacaatggtggataatgagatt
cctggtctgcccagggccatgcagaagtctggacgtcccttaaagtcagtaaagcagagg
ttaaaaggcaaagagggacgagtgaggggaaaccttatgggcaagcgagtggacttctct
gctagaactgtcatcacacccgatcccaatctttccatcgatcaagttggggtgccgagg
tccatcgctgcaaacatgagcttccccgagattgtcactcctttcaacattgataggctg
caggagttggtgcgtcgtgggaacagtcagtatcctggggccaagtacattatccgagat
aacggtgaccggattgacctgcgatttcaccccaaacccagcgatctacacttacagatt
ggttacaaggtggagagacacatgtgtgacggagatatagtgatctttaacagacagccc
acgctgcacaagatgtctatgatgggacatagagttcggatcttgccatggtccactttt
cgtctaaacttgagtgtaaccactccgtacaatgctgactttgatggggatgaaatgaac
cttcaccttcctcagtctctggagacccgggcagaaattcaggagctggctatggttccc
aggatgattgtgactcctcagtccaacagacccgtcatgggtattgtgcaagacactctc
acagctgtgcgcaaatttaccaaaagagacgtctttctggaacggggagaagtgatgaat
ttgctgatgttcttgtccacgtgggatgggaaggtcccacaaccggccatcctgaaacca
cgtcctctgtggactggaaagcagatcttctctctcattgtcccagggcacattaactgt
atccgaacccacagcacacatccagatgatgaggacagcggcccgtataaacacatctct
ccaggagacacaaaggtgatagtggaaaacggggagcttgtcatgggaattctgtgtaag
aaatctctgggaacttcagcaggttccttggttcatatttcctatttggaaatgggccac
gacactacccgtctgttctattccaacattcagactgtcatcaacaactggctacttata
gagggtcatacaattggaattggtgactccattgctgatgccaaaacctatcaggacatt
cagaataccattaaaaaagccaagcaagatgtaatagaggtcatagagaaagcccataac
aatgaactggagcccacgccaggtaacaccctgcgtcagacttttgagaaccaagtcaac
aggatcctgaacgatgccagagacaaaactggctcctctgcccagaaatctctctccgag
tacaacaacttcaagtccatggtggtgtctggggccaaaggatcaaagatcaacatttcc
caggttattgctgtggtcggccagcagaatgtggagggaaagcgaattccttttgggttc
aaacatcggacgctcccacactttattaaggatgattacggccctgagagtaggggcttt
gtggagaattcctaccttgctggtctgaccccaactgaattcttctttcatgccatggga
ggtagagagggtctgattgatacagctgtaaaaactgctgagacaggttacatccagaga
cgactgatcaagtctatggagtctgtcatggtgaagtatgacgctacagtgcgaaattcc
atcaaccaggttgtgcagctgagatacggagaggatggtctggctggggagagcgtagag
ttccagaatttggccaccttgaagccttcaaacaaagcatttgaaaaaaagttcaagttt
gattatgccaatgagcgggctttacgcaggacgctgcaggaggatgtagtgaaggacatt
ctcagcgatgcccatgtacagaatgaactggagaaggagtttgagaagatgaaggaggac
agagaagttctgagggtcatattcccaactggggacagcaaggttgtccttccctgtaac
ctgcaaagaatgatttggaacgctcagaagatatttcatataaacacacgcatgccctca
gatcttcaccccattaaagttgtagatggggtaagggagctcagcaaaaaactggtgatt
gtaaatggggacgatcccctcagccgacaggcgcaggagaatgccaccctcctgtttaac
atccacctgcgctccaccctcagtagtcggcgaatgattgaggagttcaggctcagtgga
gaggcttttgattggctcttgggggagattgagtctaaattcaatcaagccattgcacat
ccaggagagatggtgggggctttggccgcccagtctctaggagagccagctactcagatg
accctgaacaccttccattacgccggtgtgtcggctaaaaacgtcaccctgggtgtccca
cgtctaaaggaactgatcaacatctcgaagaaaccaaagaccccttctctgacggtcttc
ttgctggggcagtctgctcgggatgctgagagggcaaaggatattctgtgccgcctggag
cacacaacactacgcaaggtcacagccaacactgccatttattatgatccaaaccctcag
aatactgtggttgcagaggaccaggaatgggttaatgtgtactatgaaatgcctgacttt
gatgtgacgagaatctccccctggctgctccgcgtggaactggaccggaagcacatgact
gaccgcaaactgaccatggagcagatagcggagaaaatcaatgcaggctttggggatgat
ctcaactgtatcttcaatgatgacaacgctgagaaactggttttgagaatccggatcatg
aacagtgaagaaaacaagatgcaggacgaggaggaagttgtggacaagatggacgatgat
gtgtttctgcgttgcattgagtcaaacatgctgactgatatgactcttcaaggaattgag
caaattagcaaggtgtacatgcatctcccccagactgacaataagaaaaagatcattctt
actgaggacggggagttcaaggcccttcaggaatggattctggaaacagacggtgtcagc
ctgatgcgtgtcctcagtgagaaggacgtggatccagtcagaaccacctcaaacgatatt
gtggagatatttacggtcctgggcatagaagctgtcagaaaagccctggagagggaattg
taccacgtcatctcgtttgatggttcatacgttaattaccgccacttggcgctactgtgc
gacaccatgacctgcagggggcatcttatggctatcacacgtcatggagtcaacaggcag
gacacggggccactcatgaaatgttcctttgaagagacggtggatgtgctgatggaagcc
gctgctcatggagagtctgatcccatgaagggggtgtctgagaatatcatgttgggacaa
ctggctccagcaggaacaggctgctttgacttactgttggatgcagagaagtgtaaattt
ggcatggagattcccaccaacattcctggccttggaggaggtggacccaccggcatgttt
tttggtactgcccccagccctatgggaggaatgtcacctgccatgaccccttggaaccag
ggagccaccccggcatatggagcctggtccccaagtatcggaagtggaatgacccctgga
gctgccggcttctctccaagtgccgcttctgatgccagtggcttcagcccaggttactcc
cctgcttggtcccccacccctggttctcctggatctccagggccttcaagtccctacatt
ccctccccaggtggcgctatgtctccaagttactctcctacctcccctgcttatgaaccc
cgaagccctggaggctacactccccagagccccagctattcaccaacttctccttcctac
agcccaacatccccttcttactcccccacaagtcccaactactctcccacatctcccagt
tattctcccacttctcccagctactctccaacatctccatcttacagccccacctctcct
tcttattctcccacaagcccaagctactcccccacttcacccagctacagccctacatct
cccagttacagcccaacatcaccaagctactcccctacatctcccagttacagcccaaca
tcccccagctactcccctacttctcccagttacagcccaacatcacccagctactcccct
acaagtcccagctactctcctacaagccccagttactctccaacatctccatcttacagc
cccacctccccatcctactcccctacttcccccaactactccccttcttcccccaactat
acgccaacatctcccagttactctcccacttctcccagttacagtcctacctctcccagt
tactctcccacatctcctaattacagtccaaccagccctagttattctcccacatctccc
agttactcaccctccagtccccgttacaccccacagtctcccagctacacgccaagctct
cccagttacagcccaagttctcccagttactctcctaccagccccaaatacaccccaaca
agcccatcttacagccccagctccccagagtacaccccaacttctcccaagtactctcca
acatcacccaagtactccccaacttcacccaagtattcgccaacatctcccacatattct
cctacaactccaaaatactcccccacctccccaacctactcgccaacttcccctgtttac
accccaacttcacccaagtattcgccaacctctcccacctactctcccacctcccccaaa
tattcccctacctccccgacttattccccaaccagccccaaaggctccacgtactctcct
acttctccaggttacagccccacgtctccaacgtacagtctcaccagcccggcaatcagt
ccagatgacagtgatgaggacaactga

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