Xenopus laevis (African clawed frog): 108703583
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Entry
108703583 CDS
T01010
Symbol
polr2a.S
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03020
RNA polymerase
xla03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108703583 (polr2a.S)
09124 Replication and repair
03420 Nucleotide excision repair
108703583 (polr2a.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108703583 (polr2a.S)
03400 DNA repair and recombination proteins [BR:
xla03400
]
108703583 (polr2a.S)
Enzymes [BR:
xla01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108703583 (polr2a.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108703583 (polr2a.S)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108703583 (polr2a.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
108703583
NCBI-ProteinID:
XP_018095283
Xenbase:
XB-GENE-17343962
UniProt:
A0A8J0U2K7
LinkDB
All DBs
Position
3S:131886905..131901961
Genome browser
AA seq
1968 aa
AA seq
DB search
MHGAPSGDSACPLRTIKRVQFGVIGPDELKRMSVTEGGIKYSETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVYHVGFLVKTMKVLRCVCFFCSKLLVDAN
NPKIKDILIKSKGQPKKRLTHVYELCKGKNICEGGEEMDNKFGVEQTEGDEDIQKEKGHG
GCGRYQPRIRRTGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRITDEECFILGMDPRF
ARPEWLIITVLPVPPLCVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHV
IAEDVKLLQFHVATMVDNEIPGLPRAMQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLSIDQVGVPRSIAANMSFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIVPGHINC
IRTHSTHPDDEDSGPYKHISPGDTKVIVENGELVMGILCKKSLGTSAGSLVHISYLEMGH
DTTRLFYSNIQTVINNWLLIEGHTIGIGDSIADAKTYQDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVE
FQNLATLKPSNKAFEKKFKFDYANERALRRTLQEDVVKDILSDAHVQNELEKEFEKMKED
REVLRVIFPTGDSKVVLPCNLQRMIWNAQKIFHINTRMPSDLHPIKVVDGVRELSKKLVI
VNGDDPLSRQAQENATLLFNIHLRSTLSSRRMIEEFRLSGEAFDWLLGEIESKFNQAIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVF
LLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSEENKMQDEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIL
TEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
YHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEA
AAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKFGMEIPTNIPGLGGGGPTGMF
FGTAPSPMGGMSPAMTPWNQGATPAYGAWSPSIGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYSPSSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPSYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEDN
NT seq
5907 nt
NT seq
+upstream
nt +downstream
nt
atgcacggggctccctccggggatagcgcctgtccgctacggaccatcaaacgggtccag
ttcggcgtcatcgggcctgacgagttgaaacggatgtctgtaacagaaggtggaattaaa
tactcggagacaacagagggcggtcgccccaagcttggaggattgatggaccccaggcag
ggcgtcattgagaggagtgggagatgtcagacatgtgcaggtaacatgactgaatgtccc
ggccacttcgggcacattgaattggccaaaccagtctatcatgttggatttttggtcaag
accatgaaagtgttgagatgtgtgtgcttcttctgctccaagcttctggttgatgctaac
aacccaaagattaaggacatcctaataaagtccaaagggcaacccaagaagcgactgacc
cacgtgtatgagttgtgcaaggggaaaaacatttgtgaggggggagaagagatggacaac
aagtttggggtggagcagactgagggtgatgaggacattcagaaagaaaagggacacggt
ggctgtggccgctaccaaccgcgtattcgccgcactgggctggagctctatgccgagtgg
aaacacgtaaacgaggattcccaggagaagaaaatcttgctgagtcctgagcgtgtgcac
gagatcttcaagcgaatcacagatgaggaatgcttcattttgggaatggacccccgattt
gcacgtcctgagtggctcattatcactgtcctgcctgtgccccccctgtgtgtgagacca
gcagtcgtaatgcagggctcggccaggaatcaggatgacttgacacacaaactggctgat
attgtgaagattaataatcaactccggagaaatgagcagaatggagccgcagcccacgtc
atagcagaggatgtaaagctgcttcagttccacgtggccacaatggtggataatgagatt
cctggtctgcccagggccatgcagaagtctggacgtcccttaaagtcagtaaagcagagg
ttaaaaggcaaagagggacgagtgaggggaaaccttatgggcaagcgagtggacttctct
gctagaactgtcatcacacccgatcccaatctttccatcgatcaagttggggtgccgagg
tccatcgctgcaaacatgagcttccccgagattgtcactcctttcaacattgataggctg
caggagttggtgcgtcgtgggaacagtcagtatcctggggccaagtacattatccgagat
aacggtgaccggattgacctgcgatttcaccccaaacccagcgatctacacttacagatt
ggttacaaggtggagagacacatgtgtgacggagatatagtgatctttaacagacagccc
acgctgcacaagatgtctatgatgggacatagagttcggatcttgccatggtccactttt
cgtctaaacttgagtgtaaccactccgtacaatgctgactttgatggggatgaaatgaac
cttcaccttcctcagtctctggagacccgggcagaaattcaggagctggctatggttccc
aggatgattgtgactcctcagtccaacagacccgtcatgggtattgtgcaagacactctc
acagctgtgcgcaaatttaccaaaagagacgtctttctggaacggggagaagtgatgaat
ttgctgatgttcttgtccacgtgggatgggaaggtcccacaaccggccatcctgaaacca
cgtcctctgtggactggaaagcagatcttctctctcattgtcccagggcacattaactgt
atccgaacccacagcacacatccagatgatgaggacagcggcccgtataaacacatctct
ccaggagacacaaaggtgatagtggaaaacggggagcttgtcatgggaattctgtgtaag
aaatctctgggaacttcagcaggttccttggttcatatttcctatttggaaatgggccac
gacactacccgtctgttctattccaacattcagactgtcatcaacaactggctacttata
gagggtcatacaattggaattggtgactccattgctgatgccaaaacctatcaggacatt
cagaataccattaaaaaagccaagcaagatgtaatagaggtcatagagaaagcccataac
aatgaactggagcccacgccaggtaacaccctgcgtcagacttttgagaaccaagtcaac
aggatcctgaacgatgccagagacaaaactggctcctctgcccagaaatctctctccgag
tacaacaacttcaagtccatggtggtgtctggggccaaaggatcaaagatcaacatttcc
caggttattgctgtggtcggccagcagaatgtggagggaaagcgaattccttttgggttc
aaacatcggacgctcccacactttattaaggatgattacggccctgagagtaggggcttt
gtggagaattcctaccttgctggtctgaccccaactgaattcttctttcatgccatggga
ggtagagagggtctgattgatacagctgtaaaaactgctgagacaggttacatccagaga
cgactgatcaagtctatggagtctgtcatggtgaagtatgacgctacagtgcgaaattcc
atcaaccaggttgtgcagctgagatacggagaggatggtctggctggggagagcgtagag
ttccagaatttggccaccttgaagccttcaaacaaagcatttgaaaaaaagttcaagttt
gattatgccaatgagcgggctttacgcaggacgctgcaggaggatgtagtgaaggacatt
ctcagcgatgcccatgtacagaatgaactggagaaggagtttgagaagatgaaggaggac
agagaagttctgagggtcatattcccaactggggacagcaaggttgtccttccctgtaac
ctgcaaagaatgatttggaacgctcagaagatatttcatataaacacacgcatgccctca
gatcttcaccccattaaagttgtagatggggtaagggagctcagcaaaaaactggtgatt
gtaaatggggacgatcccctcagccgacaggcgcaggagaatgccaccctcctgtttaac
atccacctgcgctccaccctcagtagtcggcgaatgattgaggagttcaggctcagtgga
gaggcttttgattggctcttgggggagattgagtctaaattcaatcaagccattgcacat
ccaggagagatggtgggggctttggccgcccagtctctaggagagccagctactcagatg
accctgaacaccttccattacgccggtgtgtcggctaaaaacgtcaccctgggtgtccca
cgtctaaaggaactgatcaacatctcgaagaaaccaaagaccccttctctgacggtcttc
ttgctggggcagtctgctcgggatgctgagagggcaaaggatattctgtgccgcctggag
cacacaacactacgcaaggtcacagccaacactgccatttattatgatccaaaccctcag
aatactgtggttgcagaggaccaggaatgggttaatgtgtactatgaaatgcctgacttt
gatgtgacgagaatctccccctggctgctccgcgtggaactggaccggaagcacatgact
gaccgcaaactgaccatggagcagatagcggagaaaatcaatgcaggctttggggatgat
ctcaactgtatcttcaatgatgacaacgctgagaaactggttttgagaatccggatcatg
aacagtgaagaaaacaagatgcaggacgaggaggaagttgtggacaagatggacgatgat
gtgtttctgcgttgcattgagtcaaacatgctgactgatatgactcttcaaggaattgag
caaattagcaaggtgtacatgcatctcccccagactgacaataagaaaaagatcattctt
actgaggacggggagttcaaggcccttcaggaatggattctggaaacagacggtgtcagc
ctgatgcgtgtcctcagtgagaaggacgtggatccagtcagaaccacctcaaacgatatt
gtggagatatttacggtcctgggcatagaagctgtcagaaaagccctggagagggaattg
taccacgtcatctcgtttgatggttcatacgttaattaccgccacttggcgctactgtgc
gacaccatgacctgcagggggcatcttatggctatcacacgtcatggagtcaacaggcag
gacacggggccactcatgaaatgttcctttgaagagacggtggatgtgctgatggaagcc
gctgctcatggagagtctgatcccatgaagggggtgtctgagaatatcatgttgggacaa
ctggctccagcaggaacaggctgctttgacttactgttggatgcagagaagtgtaaattt
ggcatggagattcccaccaacattcctggccttggaggaggtggacccaccggcatgttt
tttggtactgcccccagccctatgggaggaatgtcacctgccatgaccccttggaaccag
ggagccaccccggcatatggagcctggtccccaagtatcggaagtggaatgacccctgga
gctgccggcttctctccaagtgccgcttctgatgccagtggcttcagcccaggttactcc
cctgcttggtcccccacccctggttctcctggatctccagggccttcaagtccctacatt
ccctccccaggtggcgctatgtctccaagttactctcctacctcccctgcttatgaaccc
cgaagccctggaggctacactccccagagccccagctattcaccaacttctccttcctac
agcccaacatccccttcttactcccccacaagtcccaactactctcccacatctcccagt
tattctcccacttctcccagctactctccaacatctccatcttacagccccacctctcct
tcttattctcccacaagcccaagctactcccccacttcacccagctacagccctacatct
cccagttacagcccaacatcaccaagctactcccctacatctcccagttacagcccaaca
tcccccagctactcccctacttctcccagttacagcccaacatcacccagctactcccct
acaagtcccagctactctcctacaagccccagttactctccaacatctccatcttacagc
cccacctccccatcctactcccctacttcccccaactactccccttcttcccccaactat
acgccaacatctcccagttactctcccacttctcccagttacagtcctacctctcccagt
tactctcccacatctcctaattacagtccaaccagccctagttattctcccacatctccc
agttactcaccctccagtccccgttacaccccacagtctcccagctacacgccaagctct
cccagttacagcccaagttctcccagttactctcctaccagccccaaatacaccccaaca
agcccatcttacagccccagctccccagagtacaccccaacttctcccaagtactctcca
acatcacccaagtactccccaacttcacccaagtattcgccaacatctcccacatattct
cctacaactccaaaatactcccccacctccccaacctactcgccaacttcccctgtttac
accccaacttcacccaagtattcgccaacctctcccacctactctcccacctcccccaaa
tattcccctacctccccgacttattccccaaccagccccaaaggctccacgtactctcct
acttctccaggttacagccccacgtctccaacgtacagtctcaccagcccggcaatcagt
ccagatgacagtgatgaggacaactga
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integrated database retrieval system