Xenopus laevis (African clawed frog): 108703712
Help
Entry
108703712 CDS
T01010
Name
(RefSeq) colorectal mutant cancer protein isoform X3
KO
K21881
Usher syndrome type-1C protein-binding protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
xla03037
]
108703712
Cilium and associated proteins [BR:
xla03037
]
Primary cilia and associated proteins
USH complex and associated proteins
108703712
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
USHBP1_PDZ-bd
DUF6376
RNase_H_2
Motif
Other DBs
NCBI-GeneID:
108703712
NCBI-ProteinID:
XP_018095380
UniProt:
A0A8J0U5M0
LinkDB
All DBs
Position
1S:101902206..101916727
Genome browser
AA seq
632 aa
AA seq
DB search
MDESHKKDQVSDTLLLRDAGNGGTQCDLFLKLHEVISSLESCAWSWRSPSGSGSVDGSDT
PSGNTTPCGAIMTFPLLAGLTEELQKVFPHDDKWLQSEISRYRQENAALRDKLRVTDREI
DNSKLTLMEMMEEKDTLQIQISKLQGYLQEEAVFSLPTSMSSSPDCAELCNPTTETPLAV
NDPLFSKQAPISTLQNMIQYLQDLSGIQPSLPCTPELQPSNMETEIEWLKGKLDCLKRLN
AQLCATLEECKSDSGKLSMQLGKLESTCTAFRLALQSSEKCLKAYSVMLALTEAKGDIIL
GQMSDGDILNSGWSSLPKDLEIKTKLFMMEVKKTFRQDRTKLEADKGDARSPALPRFYSP
WLSEEDEQMLKNYVQHLKQDFASISVMENLQMGKGVHSEIAHLADIIKTKADNAIKVSSE
TSTSCPERLLRAQIVQDLFDTKEGLAELKASIQLLQTEKRALELQSLSYLEEEKAYMLIR
DQLQQELSDWAQKKKDEDSGLEHPGYGRAALGHCEQSVPHTDMQRLLESLARGSEMKVHV
EVLSKELDELTCRVHAQKAQSAKIIIDFFKAHRNLFITYQNAQRKYHEQQRRLESQAHMM
SQCHIQQLHDLMQNILSLQAQQTARETGETSL
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatctcacaagaaagatcaagtctctgacacattactgttaagagatgctggt
aatggaggtactcagtgtgacctgtttctaaaattgcatgaagtaatttcctctctggaa
tcttgtgcatggtcctggaggagtccgtctggaagtgggtctgtagatgggagcgacacc
ccttcagggaacacaacaccctgcggtgccattatgacttttcctctcttagcagggtta
actgaggagcttcagaaggtgtttccgcatgatgacaaatggttacagtctgaaatctca
agatatcgccaggagaacgcagccctgagagacaaactaagggttacagatcgagagatt
gacaactcaaagctcacccttatggaaatgatggaagagaaggacacactgcaaatacaa
ataagcaagctacagggatatctgcaggaagaggcagttttttctctacccacctcaatg
tcttcaagtcctgattgtgctgaattatgcaacccaactacagaaactccccttgcagtg
aatgacccacttttcagcaagcaggctcccatttccacactgcaaaatatgattcagtat
cttcaggatctctctggtatccagccttcattgccatgtacgcctgagcttcaacctagc
aacatggaaacagagatagaatggctgaaaggaaaacttgactgcttgaagaggctaaac
gcccagctctgtgcgaccctagaagaatgtaagagtgactctgggaaactcagcatgcag
cttggaaaactggagtccacttgcactgcttttcgtcttgcccttcaatctagtgagaag
tgtctgaaggcatacagtgtgatgctagctctcacagaagcaaaaggagacattatccta
ggacaaatgtcagatggagacatcttgaactcaggatggagttcgctaccaaaggattta
gagattaaaaccaaactattcatgatggaggtgaagaaaacattcaggcaagatagaacc
aaattggaagcagacaagggagacgccagaagcccagcattgcctagattttattcacct
tggctcagtgaagaagatgagcaaatgttaaaaaactatgttcagcacctaaagcaagat
tttgcatccatcagtgttatggaaaatttgcagatggggaaaggtgtccattcagaaatt
gctcatcttgctgacatcatcaaaacaaaggcagacaatgccattaaggtgtcatcagaa
acttcaacaagctgccctgagagactactcagagcccaaattgtacaggatctgtttgat
accaaagaagggttagctgaactcaaagcaagcattcagttgctacagacagagaagcga
gcactagagctgcagagcttgtcttatctggaagaggagaaagcctacatgctcattaga
gatcagcttcagcaagaactgagtgactgggcacagaaaaagaaagatgaggattctggg
ttggagcatccaggttatggaagagcagcattgggtcactgtgagcagtctgttcctcac
acagatatgcagcgtctattggagtctttagcacggggcagtgaaatgaaggttcatgtg
gaagttctcagcaaagaattggatgagctaacctgtcgtgtccatgctcagaaggctcag
tctgctaaaattattatagatttcttcaaagcccacaggaatctgttcattacataccag
aatgctcaaagaaagtaccatgaacagcaacgcaggctggaatctcaggcacatatgatg
tcacagtgtcatatacaacagctacatgatctaatgcaaaatatcctaagcctgcaagca
cagcaaactgctagagaaacaggcgagacatccctctaa
DBGET
integrated database retrieval system
