Xenopus laevis (African clawed frog): 108704313
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Entry
108704313 CDS
T01010
Name
(RefSeq) probable ATP-dependent RNA helicase DDX60
KO
K20103
ATP-dependent RNA helicase DDX60 [EC:
5.6.2.7
]
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108704313
Enzymes [BR:
xla01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108704313
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
108704313
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PIN-like_DDX60
DEAD
ResIII
Helicase_C
Motif
Other DBs
NCBI-GeneID:
108704313
NCBI-ProteinID:
XP_041435460
UniProt:
A0A1L8HLG7
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All DBs
Position
1S:39620542..39691689
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AA seq
1726 aa
AA seq
DB search
MAMQGSHSAENSLDSQKESAPETSESSDPGPKAKSEYPMENAEILHGMYTFMLQKFSRAA
FASLLNDYVESEFFLIDGDSLLLTCVLDQSLKAGQHLHFFYLVESYLLKLTNRGANYAVV
FFEDMKFFYHGRADLLSLRIQLKLHLEHNTDTITYTFSNFLSAQWNSFLTDHHPYFLMVC
DEGITLSQTYFFSMLMLSALGRKIDLVLAEGQEFDQLRVYGYHISASRHNLHPIKNQKQI
LQALVDPCAKLYGEHVQDFDFSDTIKKIKQSIPFLNKENEALDIRSLMCILSCSAVLKMY
GQKRKSTNHRKIKASQDDSDLTLEEVADLCRMYCLSVAILQVLPLSQRMKSRNISASWNT
PVLACLDLLNIFEHIILKTFSDTPDRNINWAHIPDLSDGLLLKNIAYFYEKEKSTDLNWK
FGKTIEDKYSFIWNSILKVNPHSEQTQSYEIRTTSRCFLSKDSLVKVRDENIPTIGLLKA
KCDIVDEYAGDILQELPFLNSIEHRETPVTRGKYFDELIHWHSGRPLSDDYDKTKGSDEA
LKDERALRDYQKLQTFQRFSGQSLVSSSSKTIVVQNDESEKKVEKEKIVVKKKESQKSKK
DLIIEENQKRMNAKEETKEVEQWKSIASSTAKEMRANFFPGLKKLEHFIKNTQSKSVKLL
AELSGLRISLEVWVEHCCTHKEEKDLNIAVEIMKRIQTLQIKYKDMMTKEDQQMITNCLN
YLGFENLACTLPCSKGTSAREDKKKAECLVGVGSARFQLQFMSPYLLRDERTDPDPRVQH
FIPDTWQRKLLDVVDNNESAVIVAPTSSGKTYASYYCMQKVLSQGHEGVVVYVSPTKALV
NQVVTTVINQFNKNCPTGVALCGVFTRDYRTDTLNCQILVTVPQCLEILLLSPHRQEWTK
RIKYVIFDEIHCLGGEIGAEVWEHLLVMIRCPFLALSATISNPEHLTEWLQSVQNYWQIR
DKLIDDKWTEKGRKAKAYKKTEKKSYRVRLVIYGKRYNDLEKYVCSVQDSEVSFEHYHPC
AALTMDHIEKYGIPNDLSCSPRESLQLYDTMVNAWPKWSRRQELDPEEYKHFKNKIIITK
NETLAYDEELKTELVNWIKQGHKKKISQVLKCLQPPKPSCNVNRISNFSKLVEKLKEEQK
LPALFFAFNIGLVERLAEEAAIFLKERQDNKTKLLTEKETKKLDTKAKRLGKAIAKNISD
GNDALFANFANFKNITQVLKKDKEIPPDCTYADTRAVNNELLFEVFRQTSRSRDANRLRF
LAKRGVGFHHASLDVKGRRQVEMLFRMGYLRVVTATGSLALGINMPCKSVVFVEDSLYLD
ALNFRQMSGRAGRRGLDVLGNVYFYSIPLPKVKRLIKADVPNLKGQFPLSISLVLRLMLL
AAKADHKEDASAKALSVLKHSLMAFKKPSETKMLKLYFLFCIQFLIHEGYLDQHCNPLDF
AGLVTHLHYHEPSNFVFVSFLEKGVFHRLCQRKTKGSKTFPQSVMETLVLVLANLFGRIY
LLPSMMKLKGTFKQSKVFLESLPDDFAAALKDYNSKVSEVFGQYLLAVSHLANYEPEYQL
PLSQINFSGEQYKDSQLLNHLLSCTKRRSAVSPFACLSGNTDYNLLTSENVDSLLLQTVH
VSQKHIAVLHLEKTDAFGRKRLLNAYALDFFKHGSIDALEEDNGFHKGDAFYKLRDFSLS
IATISVSLREFCEDEDDPVVLAFEQLNTMYKEKLATAYPMRRNMFA
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atggctatgcaaggatctcattcagcagagaactcactggactcccaaaaagaatctgca
cctgaaacttctgaatcaagtgacccaggaccaaaggctaaaagtgaatatccgatggaa
aatgctgaaatcctgcatggcatgtacacatttatgttgcagaaattctcaagagctgcc
tttgccagtctgctcaatgattatgtggaatctgaattcttcttgattgatggagattcc
ttactgctaacttgtgttttggatcagtcactgaaggcaggacagcatctgcatttcttc
tacttggtagaatcctacttgcttaaattgaccaatagaggagcgaactatgctgttgtg
ttttttgaggacatgaagtttttctaccatggcagggcagaccttctttctctacggatc
caactgaaactgcacttggaacataatacagacacaatcacatacaccttctccaacttt
ttgtctgctcagtggaactcatttctgactgatcaccatccctattttctaatggtttgt
gatgaaggcattactctttctcaaacatatttcttcagtatgcttatgctgagtgctctg
ggaagaaaaatagacctcgtactcgctgaaggacaagagtttgatcagctccgggtgtat
ggataccatatcagtgcttcccgtcataacttacatcccataaagaatcagaagcaaatt
cttcaagcacttgttgatccatgtgcaaagttgtatggagaacatgtacaggactttgat
ttcagtgataccataaaaaagatcaaacagagtataccatttcttaacaaagagaatgag
gctttagacataagaagtttgatgtgtattttgtcctgctctgccgtcctaaaaatgtat
ggccaaaaaaggaaaagcacaaaccatcgaaagattaaggcctcacaggatgacagtgac
ctgacattggaagaagtggctgacctgtgcagaatgtactgtctgagtgtggccatatta
caagttttgcctctttcccagaggatgaaatctaggaatataagtgcaagttggaacacc
cctgtattggcatgtttagacttgctaaatatatttgaacacattattctgaagacgttt
tctgacaccccagacaggaatataaattgggcacacatccctgacttaagtgatggtttg
ctgttaaaaaacattgcatatttctatgaaaaagagaaaagtacagacctcaattggaaa
tttgggaagacaatagaagataagtattcgtttatctggaactccattttgaaagtgaac
ccacatagtgaacaaacacagtcctatgaaatcagaacaacctcacgttgcttcctttca
aaggattccttagtaaaagtgagagatgagaacataccaactataggtcttctaaaagca
aagtgtgacattgttgatgaatatgctggggacattctgcaggagttaccattcttaaac
agtattgaacatagagaaactcctgtcaccagagggaaatattttgatgaacttatacac
tggcattctggacgtccactaagtgatgactatgacaaaacaaagggaagtgatgaagca
ttgaaagatgaacgtgctctcagagattatcaaaagctgcagacttttcaacgttttagt
gggcaatctttagtctcctcatcatccaagacaattgtagtacagaacgatgaatctgag
aagaaggtggagaaagaaaagattgttgtgaagaaaaaggaatcacagaaatccaaaaaa
gatctaatcatagaagaaaatcagaaaagaatgaacgccaaagaagaaactaaggaagtt
gaacagtggaaatctattgcatcttccactgcaaaagaaatgagagcaaatttttttcct
ggcttaaaaaaactggaacatttcatcaagaacacccaaagcaaatcagtgaagcttctt
gcagaactatcgggattaagaatttcccttgaggtctgggttgaacactgctgcacgcac
aaagaggagaaagatttaaatattgctgtggaaatcatgaagaggatacagacacttcag
attaaatacaaggatatgatgactaaagaggatcaacaaatgattactaattgtcttaat
tatctgggttttgagaatttggcgtgcacattaccatgttcaaagggaaccagtgctcga
gaggataaaaaaaaagcagagtgtttggttggagttggatctgctcgtttccaattgcag
ttcatgagtccatacttgttaagagatgaaaggacagatcctgatccaagagtgcaacat
tttattccggacacatggcagcgcaaacttcttgatgttgttgacaataatgagtctgcg
gtgatagttgcccctacatcttcaggaaagacctatgcttcgtactactgcatgcagaaa
gttttgagtcaaggccatgaaggtgtggttgtgtatgtttcaccaacaaaggctcttgta
aaccaggtggtaaccactgtaatcaatcagttcaacaaaaattgtccaactggagttgct
ctgtgtggtgttttcacaagggattatcgtactgatacattaaactgccagatattagta
actgtgcctcagtgccttgagatacttctcctgtctccgcaccgtcaggaatggactaaa
aggattaaatatgtcatatttgatgagattcattgccttggaggagaaattggtgcagaa
gtatgggaacatcttctagtgatgatccgttgtccatttcttgctttgtctgcaacgata
agtaacccagaacaccttactgaatggctgcaatcagttcaaaattattggcagataagg
gacaaattaatagatgacaaatggacagagaaaggaaggaaggctaaagcctataagaag
acagaaaaaaagtcttacagagtgcgcctggtgatctatggcaagagatacaatgatctg
gagaagtatgtctgctctgtgcaagactccgaagtgtcttttgagcactatcacccgtgt
gctgccttaaccatggaccatatagagaaatacggaattccaaatgacctgtcctgctct
ccaagggaaagtttacaactgtatgacactatggttaatgcgtggcctaagtggtcaaga
agacaggaattggaccctgaagaatataaacatttcaaaaacaaaatcatcataacaaaa
aatgaaacattagcatacgacgaagaactcaaaacagaattggtcaactggattaaacaa
ggacacaagaaaaagatttcgcaagtgcttaagtgtcttcagccaccaaaaccttcttgc
aatgtgaatcgcatctccaacttctcaaagcttgttgaaaaactgaaagaagagcaaaag
ctaccagcacttttttttgcatttaacatcggacttgtggaacgtcttgcagaggaggca
gccatatttcttaaagagagacaagacaataagacaaaactgttgactgagaaagaaacc
aaaaagcttgacaccaaagcaaaaagactgggaaaggcaatagcaaaaaatatatcggat
gggaatgatgctttattcgccaattttgccaattttaagaatataacgcaagtgctgaag
aaggacaaagaaatcccaccagattgtacttatgctgataccagagctgtgaacaatgag
ttactctttgaggtgttcagacaaacaagtcgatcaagagatgcaaatcgtctgaggttt
ctggcaaagagaggtgtgggcttccatcatgcatctttggatgttaaaggaagaagacag
gttgagatgctcttcaggatgggatacctacgtgttgtaactgcgactggatctctagcc
ttaggaatcaacatgccatgcaaatctgtagtgtttgttgaagattcgctttacctggat
gccttaaatttcagacagatgtcaggacgtgcaggaaggcgaggactggatgtgttggga
aatgtatacttttactccattcctttgcctaaagtaaaaaggcttattaaagcagatgtt
cctaatttaaagggacagttcccattaagcatctctttggtactacgactcatgttattg
gctgctaaggctgatcataaagaagatgccagtgctaaggcattgtcagtattgaagcac
tcactgatggcatttaaaaaaccttctgaaaccaaaatgttaaagctctacttcctattc
tgcatacaattcttaatccacgagggctatttggatcaacactgcaaccctctggacttt
gctggactggttacccatttacattaccatgaaccctcaaattttgtgtttgtcagtttt
cttgaaaaaggtgtatttcaccgactgtgccagagaaaaactaaaggttcaaaaacgttt
ccacaatcagtgatggaaaccctagtgctggttttggcaaacctgtttggaagaatctac
cttttaccatccatgatgaaattaaagggaacatttaaacagtcgaaggtctttctggag
agtctaccagatgattttgctgcagcccttaaagactacaattctaaagtatcagaagtc
tttggccagtatctacttgctgtttcccatctggcaaattatgaaccagaataccagctt
cctttatcccagataaacttctctggggaacaatataaggattcacaacttttaaaccac
ttgctgagttgcacaaaaagaagaagtgccgtatcgccctttgcctgcctgtctggaaat
acggattataacttacttacttcagaaaatgtggacagtctgttgttgcaaactgttcac
gtaagtcaaaaacacattgctgtgctacatttggagaaaacagatgctttcggtagaaaa
cggttactgaacgcctatgcactggatttctttaagcacggctccatagatgcactggaa
gaagataatgggtttcacaaaggagatgctttttacaaattaagagatttttctttatcc
attgcaactataagtgtgtctttgagggaattttgtgaagatgaggatgatcccgttgtg
ttagctttcgagcagctcaataccatgtacaaagaaaaactggccactgcttatcccatg
cgcaggaacatgttcgcttga
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