Xenopus laevis (African clawed frog): 108705241
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Entry
108705241 CDS
T01010
Symbol
smarca4.L
Name
(RefSeq) transcription activator BRG1 isoform X1
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108705241 (smarca4.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108705241 (smarca4.L)
03036 Chromosome and associated proteins [BR:
xla03036
]
108705241 (smarca4.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108705241 (smarca4.L)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
108705241 (smarca4.L)
Chromatin remodeling factors
BAF complex
108705241 (smarca4.L)
PBAF complex
108705241 (smarca4.L)
GBAF(ncBAF) complex
108705241 (smarca4.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SnAC
Bromodomain
HSA
BRK
QLQ
ResIII
HDA2-3
DEAD
DUF2009
Motif
Other DBs
NCBI-GeneID:
108705241
NCBI-ProteinID:
XP_018097522
Xenbase:
XB-GENE-17342693
UniProt:
A0A8J0TYK0
LinkDB
All DBs
Position
3L:148465572..148506409
Genome browser
AA seq
1606 aa
AA seq
DB search
MSTPDPPMGGTPRPVPSPGPGPSPGAMLGPSPGPSPGSAHSMMGPSPGPPIPPQGPAGYP
PENMHQMHKPMDSMHDKAMPEDPRYNQMKGMGMRPGGHSGMGPPPSPMDQHSQGYPSPLG
NSEHVSSPVPSNGPPSGPPMPSGPSAVTMENSDPQQQASRSPTPFNQNQLHQLRAQIMAY
KMLARGQPLPDHLQMAVQGKRPMPGIQQQMPTLPPPAASGTGTGPAPGPVPPNYNRPHVL
LGMAGPTMPPPGPSGAPPGMPGHPVGAPPKPWPEGPLANAAAPAAAPQKLIPPQPTGRPS
PAPPAVPPAASPVMPPQTQSPGQPAQPPPIVQFHPKPNRITPIQKPRGLDPVEVLQEREY
RLQARIAHRIQELENLPGSLPGDLRTKATIELKALRLLNFQRQLRQEVVVCMRRDTALET
ALNAKAYKRSKRQSLREARITEKLEKQQKIEQERKRRQKHQEYLNSILQHAKDFKEFHRS
VTGKIQKLTKAVSTYHANTEREQKKENERIEKERMRRLMAEDEEGYRKLIDQKKDKRLAY
LLQQTDEYVGNLTELVRQHKAVQALKEKKRRKKKKVQESAEGQQPTLGPDGEPLDETSQM
SDLPVKLIHVDSGKILIGADAPKAGQLDAWLEMNPGYEVAPRSDSEESGSEEEEEEEEEE
QQQPSVPTLLPVDEGKKITDPDSDDVSEVHARAIIANARQDVDDEYGIPQTPICGLQSYY
AVAHAVSEKVEKQSTLLVNGILKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIAL
ITYLMEHKRINGPFLIIVPLSTLSNWVYEFDKWGPSVVKVSYKGSPIARRAFVPTLRSGK
FNVLLTTYEYIIKDKHMLAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRLLLTGT
PLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTGEKVDLNEEETILIIRRLHKVL
RPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQGKGVLLTDGSEKDKKGKGGT
KTLMNTIMQLRKICNHPYIFQQIEESFSEHLGFTGGIVQGQDVYRASGKFELLDRILPKL
RATKHKVLLFCQMTMLMTIMEDYFAYRGFKYLRLDGTTKADDRGMLLKSFNEPDSDYFIF
LLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSVEE
KILAAAKYKLNVDQKVIQAGMFDQKSSSHERKAFLQAILEHEEQDEEEDEVPDDETVNQM
IARHEEEFDLFMRMDLDRRREEARNPKRRPRLMEEDELPSWIIKDDAEVERLTCEEEEEK
MFGRGSRNRKEVDYSDSLTEKQWLKTAQAIEEGTLDEIEEEVRHKKTTRKRKRDIDPCMV
TPTTSTRGRERDDEGKKQKKRGRPPAEKLSPNPPKLTKKMKKIVDAVIKYKDSSNARQLS
EVFIQLPSRKELPEYYELIRKPVDFRKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLE
GSLIYEDSIVLQSVFTSVRQKIEKEEESEGDDSEEEEEVEEEGSESESRSMKVKIKLGRK
EKGQERMKGRRRTGRGCRAKPVISDDDSEEEQEEANERSGSGSEED
NT seq
4821 nt
NT seq
+upstream
nt +downstream
nt
atgtctaccccagaccctccaatggggggcactccccggcctgttccttctcctgggcca
gggccttctcctggagctatgcttggccccagtccaggaccctctcctggctccgcacac
agcatgatgggaccaagccctgggccacctattcccccacaggggcctgctgggtaccca
cctgaaaatatgcaccagatgcataagccaatggattccatgcatgacaaagcaatgcct
gaagacccccgttacaatcagatgaagggtatgggcatgagacccgggggtcactctggg
atggggcctccacctagtcctatggaccagcactcccaaggatacccatctcctttgggc
aactctgagcatgtgtccagccctgtaccctctaatggtcctccatctggtcctccaatg
ccttcagggccatcagcagtgacaatggagaactctgacccacagcagcaggcgagccga
agtcctactcccttcaaccagaaccagctgcaccagttacgggctcagataatggcttac
aaaatgctggccagggggcaacctttacccgaccaccttcagatggcagtgcaaggaaaa
agacccatgcctgggatacaacaacagatgccaacactacctccacctgctgcttcagga
accggcactggtcctgctccaggtccagtgccccctaattacaacagacctcatgttcta
ctaggaatggctggtcctactatgccacctcctggcccatcaggagctcctcctggaatg
cctggccaccctgttggtgctccacctaagccttggcctgaaggtcccttggctaatgca
gctgctcctgccgctgctccccagaagctaattcctccacagcctacaggccgcccttcc
cctgctcctcctgctgtgcctcctgctgcctccccagtaatgccaccacaaacacagtct
ccaggccagcctgctcagcctcctcccatagtacagtttcacccaaagcccaaccgtatc
actcccatacagaaaccccgaggcctggatcctgtggaggtgctacaggaaagggagtac
agactgcaggcgagaattgcacacaggatccaggaactggaaaatcttcctggttctttg
cctggtgacctaaggaccaaagctaccatagagctgaaagctttaaggctcctcaatttt
cagagacaactgcggcaagaagtggtggtctgcatgcggagggacactgccctcgagact
gccctaaatgcaaaggcctacaaacgcagcaagcggcagtccttgcgcgaagcacgtatc
acagaaaaactggaaaagcagcagaagattgaacaggagcgcaagaggaggcaaaagcac
caggagtatctaaacagcatcctccaacatgccaaggacttcaaggaattccatcgttca
gtcacagggaagatccaaaaactgacaaaggctgtatccacttaccacgccaacacagaa
agagaacagaagaaggagaatgaaagaatcgagaaggagagaatgcgcaggctcatggct
gaggatgaagagggctataggaagctgatcgatcagaagaaagacaagcgtctggcctac
ctcctgcaacagacagacgagtatgtaggaaatctgacagaattggtgcgacaacacaag
gcggtccaagccctcaaagagaagaagagaaggaaaaagaaaaaggtgcaagagagtgca
gaaggacagcagcctacacttggaccagatggagagccactggatgagaccagccagatg
agcgacctcccagtcaaactgatccatgtggatagtggaaagatcttgattggcgctgat
gcaccaaaggctggacagctggatgcgtggcttgaaatgaaccctgggtatgaagttgca
ccacggtctgatagcgaggagagtggatcagaagaggaagaagaggaagaagaggaggag
caacagcagccttctgtccctaccctgctgcctgtggatgagggcaaaaaaatcactgac
ccagacagtgacgatgtgtctgaggttcatgcacgagcaataatagctaatgcccgccag
gatgtggatgatgagtacggtataccacagaccccaatctgtggcctccagtcttactat
gcagtggcgcacgcagtaagtgagaaggtggagaagcagtcaaccctgttagtgaatggt
atcctgaaacagtatcagattaagggcctggagtggctggtctcactttacaacaataac
ctgaatgggatccttgccgatgagatgggtctgggaaagactattcagaccattgctctg
attacatacctcatggaacacaagcgcatcaacgggcccttcctcatcattgtgccattg
tcgactttatccaactgggtttatgagtttgacaagtggggtccgtcagtggtgaaagtc
tcctacaagggctctcctattgctcgccgtgcttttgttcccacacttcgcagtgggaaa
ttcaacgtcctcctcactacatacgagtacattattaaagataagcacatgctagccaag
atccgctggaaatacatgattgtggatgaaggccatcgaatgaagaaccatcactgcaaa
cttacacaggtcttgaacacacactacgtagccccccggcgcttgcttctcactggtacc
ccactgcagaacaagcttcccgagctctgggctcttctcaacttccttctcccaaccata
ttcaagagctgcagcacttttgagcagtggtttaatgccccctttgcaatgactggagag
aaggtggatctaaatgaggaagaaacaattcttattatccgccgtctccataaagtcctt
cgtcccttcttgctacgtaggcttaaaaaagaagtggaagctcagctgccagaaaaggtg
gaatatgttatcaagtgcgacatgtctgcgttacagcgtgttctgtacagacacatgcaa
ggcaaaggggtgctgctcacagatgggtctgagaaggataaaaagggcaagggaggcacc
aagaccctcatgaacaccatcatgcagctgaggaagatctgtaaccatccatacatattc
cagcaaatagaggagtcgttttcagaacacttgggattcacaggaggaattgtacagggg
caagatgtctaccgggcgtctgggaagtttgagctgttagatcggatactgcccaagctg
agagccaccaagcacaaggttctgctcttttgccagatgaccatgctgatgaccatcatg
gaagattactttgcttaccgtggctttaaatacctccgattggatggcaccactaaagca
gatgaccgtggaatgttattgaaatcctttaatgagcctgattctgattactttatcttt
ctgctcagcacacgtgctgggggtctgggcttaaaccttcagtctgcagacactgttatc
atatttgatagtgactggaacccacatcaggatttacaggctcaggaccgagctcaccga
atcgggcagcagaatgaggtgcgagtgctgcgcttgtgtactgtgaacagcgtggaagaa
aagattctggccgcagcaaagtataaacttaacgtggaccaaaaggttatccaggccgga
atgttcgaccagaaatcctccagccatgaacgcaaggccttcctgcaggccattttggag
cacgaagagcaagatgaggaggaagatgaggtgccagatgatgaaactgtgaaccagatg
attgcacgtcacgaggaagagttcgaccttttcatgcgcatggatctggacaggagaaga
gaggaagcccgtaatcccaaacgcagacctcgcctcatggaggaagatgaactgccgtcc
tggatcattaaagacgatgcagaggtggagcgcctcacttgcgaagaagaagaagaaaag
atgtttggccgcggctctcgtaaccgcaaggaggtggattatagcgactcgctcacagaa
aagcagtggctgaagactgcgcaggccatagaggaggggactctagatgagattgaggag
gaagtgcggcataagaaaacaactcgcaagaggaagagagacatcgatccctgtatggta
acgccaaccacaagcacacggggcagggagagggatgatgagggcaagaaacagaagaag
aggggaagacccccagccgagaaactatctccaaaccccccaaaactcaccaagaagatg
aagaagattgtggatgccgtcataaagtacaaagacagttctaatgctcgccagctgagc
gaagtgtttattcagttgccatcacgtaaggaactccccgagtactacgagctcattcgt
aagccagtggactttagaaagatcaaggagaggatccgaaatcacaagtaccgaagcctg
aacgatctggagaaagatgtcatgctgctgtgtcagaatgctcagaccttcaacctggag
ggctccttgatctacgaagactcgattgtgctccagtctgtgttcaccagtgtgaggcag
aagatcgagaaggaagaggagagcgagggagatgatagtgaggaagaggaggaagtggaa
gaagaaggctcagagtcagagtcgcgctccatgaaggtcaagataaaattggggcgcaag
gagaaaggtcaggagaggatgaagggacgcaggcgaaccggccgagggtgcagagccaag
ccagtgatcagcgatgatgatagcgaggaagaacaagaggaggccaatgagcgctcagga
agcggaagtgaagaagactga
DBGET
integrated database retrieval system
