Xenopus laevis (African clawed frog): 108705475
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Entry
108705475 CDS
T01010
Symbol
myo5b.S
Name
(RefSeq) unconventional myosin-Vb isoform X1
KO
K10357
myosin V
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09142 Cell motility
04814 Motor proteins
108705475 (myo5b.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108705475 (myo5b.S)
04131 Membrane trafficking [BR:
xla04131
]
108705475 (myo5b.S)
03029 Mitochondrial biogenesis [BR:
xla03029
]
108705475 (myo5b.S)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
xla04812
]
108705475 (myo5b.S)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Cargo complex
108705475 (myo5b.S)
mRNA cycle factors
P-body specific factors
108705475 (myo5b.S)
Membrane trafficking [BR:
xla04131
]
Others
Actin-binding proteins
Myosins
108705475 (myo5b.S)
Mitochondrial biogenesis [BR:
xla03029
]
Mitochondrial quality control factors
Mitochondrial dynamics
Retention of mitochondria
108705475 (myo5b.S)
Cytoskeleton proteins [BR:
xla04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Myosins
108705475 (myo5b.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Myosin_head
DIL
IQ
Myosin_N
AAA_22
AAA_16
Ac76
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
108705475
NCBI-ProteinID:
XP_041436573
Xenbase:
XB-GENE-6487867
UniProt:
A0A8J1M4F0
LinkDB
All DBs
Position
1S:complement(193191253..193317573)
Genome browser
AA seq
1835 aa
AA seq
DB search
MSVYELYSQYTRVWIPDPDDVWRSAEIIKDYKEGDKSLQLKLEDESVIQHRVDPNQLPHL
RNPDILVGENDLTALSYLHEPAVLHNLKVRFLESNHIYTYCGIVLVAINPYQQLPIYGED
VIYAYSGQNMGDMDPHIFAVAEEAYKQMARDEKNQSIIVSGESGAGKTVSAKYAMRYFAT
VGGSASEANVEEKVLASSPIMEAIGNAKTTRNDNSSRFGKYIQIGFDKRYHIIGANMRTY
LLEKSRVVFQADMERNYHIFYQLCASAGLPEFSELSLAEAEEFFYTNQGGDPIIDGVDDA
EDFEKTRQAFTLLGVKESHQMGIFKIVASILHLGNVAIQSEREGESSNLSKGDKHLNHFC
NLLGLEQDQMQHWLCHRKLITTSETYVKTMSAEQAVNARNALAKLIYAQLFNWIVQHVNK
ALHTTIKQHSFIGVLDIYGFETFEINSFEQFCINYANEKLQQQFNSHVFKLEQEEYMKEQ
IPWTLIDFYDNQPCIDLIEAKLGILDLLDEECKVPKGTDQNWAQKLYDRHGSSQHFKKPR
MSNVAFIVVHFADQVEYQCDGFLEKNRDTVYEEQINILKASKYPLVADLFQNEKDTVPPT
PTGKGKISVRPAKPALKSANKEHKKTVGHQFRNSLQLLMETLNATTPHYVRCIKPNDDKE
SFSFDPKRAVQQLRACGVLETIRISAAGYPSRWTYHDFFNRYRVLMKKKDISLGDKKVVC
KNVLENLIKDPDKFQFGRTKIFFRAGQVAYLEKLRADKFRAATIMIQKTVRGWLQRVKYR
RMKKSAVTIQRYTRGHLARRLAQHLRMTKAAISFQKQFRMIRVYRGFQKTRTAAITIQSY
TRGMFVRRDYRQILEQHKATIIQKHLRGWMVRKQFTKFRCAAVVIQCYYRRMKARRELKQ
LKIEARTAEHFKNLSVGMENKVVQLQRKLDEQNKGQKDLKEQLAAVTSTHAVEVEKLQKE
IEKQRQAQQDENQLSSLQEELEALREELAKAYNEKKIVEDTLMSEKEQLLQRVSELEEEN
THLKEEKEELNNKIILRSEDEFTQSTVKENLQIKKDLEEERSRHQNLVKEYTRLEQRYDN
LKDEVNIIKQQIPGHRRNPSNQSSLESDSNYPSISTSEIGDTEDTINEVEEAGLEKAAMD
MSLFLKLQKRVRELELERKKLQSQLDKKEQQEHKKSQVIDTANEVTADRDTDLAYNNLKR
QELESENKKLKNDLNEMRKAIADGAVDGSSDEARMTMLLNQLKSAHEELEVRKEEVLMLR
TQIVKAAQQKEAERIMNSEASWPNSNKEMDEDDAIEAYHGVCETNRKTQDWGYLNEDGEL
GLAYQGLKQVARILEAQLQAQIRQHDEEVEILSSHIDSLKEELEKQQQVLLQALQLSPEA
QVEFGLQHEITRLTNENLDLKELLEKSEKNEKKLKKQLKVYMKKGQDAEDTVQPERKPEL
TRQVTVQRIEKDFQGMLEYYKEEEPLLIRNLIIDLKPEQMSSTVPCLPAYILFMCIRHAD
YINDDQKVHSLLTSTINGIKKVLKKHHSEFQIASFWLSNSSRLLHCLKQYSGDEGFMTSN
NPKQNEHCLRNFDLTEYRQVLSDLSIQIYQQMIKIAETHMQPMIVSAMLETESIQGLSGV
KQTGYRKRTTSMADGDNSYSLETVIRQLNAFNSIMCDHGLDPEIIQQVFKQLFYLINAVT
LNNLLLRKDVCSWSTGMQLRYNISQLEEWLRGKNLHASGAAQTMEPLIQAAQLLQIKKKT
EEDAEAICFLCTALTTQQIVKILNLYTPVNEFEERVTVSFIRIIQAQLQERNDPPQLLMD
SKYMFPVLFPFNPSAIILDSVQIPPSLKLDFLLKV
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtgtatgaactttactcccagtacacccgggtttggataccggatcccgatgat
gtctggagatctgcggaaattatcaaggactataaagaaggggataaaagtctgcaatta
aaactagaagatgaatctgtcatacagcaccgcgtggatccaaaccagttaccgcacctc
cgcaacccagatatcctggtgggagagaatgacctgacggctctcagttatctgcatgaa
ccggccgtactccataaccttaaagtccgtttcctggaatcgaatcatatttatacttat
tgtggaattgttcttgttgccataaacccatatcagcagttgccaatctatggagaagat
gtcatctacgcatacagtggccaaaatatgggggacatggacccccacatatttgcagtg
gccgaggaagcctataagcagatggccagggatgaaaagaaccagtccataattgtaagt
ggagagtctggagcagggaaaaccgtgtctgccaaatatgccatgcgctactttgccaca
gtgggtggttctgccagtgaagctaatgtggaagagaaagtattggcttctagtcccatt
atggaggctatcgggaatgccaaaacaacccgcaacgacaacagcagccgatttggaaag
tacattcagattgggtttgacaaacgatatcatatcatcggtgccaacatgaggacttac
cttcttgagaaatcacgggttgttttccaggctgacatggaaaggaactaccatattttc
taccagctctgtgcgtctgcaggcttgcccgagttctctgagctgtcactggctgaagcc
gaggagtttttttacaccaaccagggaggtgatcctattattgatggagtggatgatgct
gaagactttgagaagacgagacaggctttcacacttctgggagtgaaggagtctcatcaa
atgggcatctttaagattgtggcttccattctgcatcttggaaatgttgcaattcagtca
gagcgggaaggggaatcgagtaacctgtcgaaaggggataagcacctgaatcatttctgc
aatttacttgggctggagcaagaccagatgcaacactggctgtgccaccggaagctcatc
accacctccgaaacctacgtgaagaccatgtcagccgagcaggccgtaaatgcgaggaac
gccttggccaagctcatctatgctcagcttttcaattggatagtgcaacatgtgaacaaa
gccctgcacaccaccataaagcaacactcctttattggggtccttgacatatacgggttt
gaaacctttgaaataaacagctttgagcagttttgcatcaattacgccaatgagaagctg
caacagcagtttaactcgcacgtctttaaactggaacaagaagaatacatgaaagagcag
attccatggacactgatagacttctatgacaatcaaccttgtattgacttgattgaagca
aagttgggaattttggaccttctagatgaagagtgcaaggtccccaaaggaactgaccag
aactgggcacagaagttatatgaccggcatggaagcagccaacacttcaagaaacccaga
atgtctaatgtggcttttattgtggtacattttgctgatcaagtggagtatcaatgcgat
ggatttctggagaagaacagggacactgtgtatgaggagcagattaacatactaaaggcc
tcaaagtatccactggttgctgacctgtttcaaaatgaaaaagacactgttccccctact
ccgactgggaagggtaaaatcagtgttcggcctgcaaaacctgctctgaaaagtgcgaat
aaagaacataagaaaactgtgggacatcagttccggaactccctgcagctgctgatggaa
accttgaatgccacaactccccactatgtgcgctgcattaagcccaatgatgataaggag
tctttcagttttgatccaaagagagccgtgcagcagctgagagcatgtggtgtgctggag
accatccggattagtgctgccggctatccatccaggtggacctaccatgacttcttcaac
aggtaccgagtgctaatgaaaaagaaggacatttctctgggagacaagaaggtggtctgt
aagaacgtcctagagaatcttatcaaggatcctgacaagttccagtttggacgaacaaag
atctttttccgggctggccaagtggcctacttagagaaactgcgcgcagacaagttccgt
gccgctaccattatgatacagaagactgtacggggctggctacaaagggtgaaatacaga
aggatgaagaagagtgcggttaccatccagagatatacacgtgggcaccttgcccggagg
ttggcccagcacctcaggatgacgaaggctgccatcagcttccagaagcaattccgaatg
atccgtgtgtatcgtggcttccagaagactcgcacggcagctataactatccagtcctac
actcggggaatgtttgtcaggagagattatcggcagattttggagcagcacaaagccacc
atcattcagaagcacttgcgcgggtggatggttcgcaaacagtttaccaaattccgctgc
gccgccgttgttattcagtgttactaccgccgcatgaaagccagacgggagctgaaacag
ttaaagattgaagcccgaacagcggagcactttaagaatctcagcgtgggcatggagaac
aaggtggttcagctgcagagaaagcttgatgagcagaacaaggggcagaaagacctgaag
gagcaactggcagccgtgacttctactcatgcagttgaggttgagaaacttcagaaggaa
atcgagaagcaaagacaggctcagcaggacgagaaccaactcagcagcttgcaggaggaa
ctggaggctctgagggaagaacttgccaaagcatacaatgagaagaagattgtagaagac
actctcatgagtgagaaagagcagctgctgcagcgcgtttcagagctggaagaggagaac
actcacttgaaagaggaaaaagaagaactcaataataaaatcattctgcgatctgaagat
gaatttacccaaagtacagtgaaggagaacctgcagatcaagaaggatctcgaggaagaa
aggtcccggcaccagaatctggtaaaggaatatacaaggttggagcagagatatgacaac
ctgaaggatgaggtgaacattattaagcaacagataccaggtcacaggaggaatccgtcc
aatcagagcagcttagaatctgactccaattacccctcaatatctacctctgagatcggg
gacacagaggataccatcaatgaggtggaggaggctgggctggaaaaggctgccatggac
atgtctctgttcctgaagctgcagaagagggtgagggaacttgagcttgagaggaagaag
ctgcagagccaactggacaaaaaagaacagcaagaacataaaaaatcacaggttatagac
acagccaatgaggtgactgcagaccgcgacactgatcttgcctacaacaatctgaagagg
caagaacttgagtctgaaaacaagaagcttaaaaacgatttgaatgagatgaggaaggcg
atagcagatggagcagtagatgggtcaagcgatgaggctagaatgactatgttactcaac
caactgaaatcggcccatgaggagctggaggtgcggaaggaagaagtacttatgctcaga
acccagattgtgaaggcagctcaacaaaaagaggcagagaggattatgaattcagaagcc
agttggccaaacagcaacaaggaaatggatgaagacgacgccattgaagcctatcatgga
gtctgtgagacaaacagaaagactcaggattgggggtacctaaatgaagatggtgagctt
ggcctggcctatcaaggcttaaagcaagtagccaggattctggaggctcagcttcaggca
caaatcaggcagcacgacgaggaggtggagatactgagctctcacattgactccctaaag
gaagagttggagaagcagcagcaggttcttcttcaggctcttcagctttccccggaggct
caggtggagttcggacttcagcatgaaattacccgcctcactaatgagaacctggatctt
aaagaattactggagaaatcagaaaagaacgagaagaaattgaagaaacaactaaaagtt
tacatgaagaaaggacaggatgctgaagacacggtgcagccagaaaggaaacctgaactc
acccgtcaggtgacagtgcagcgaatcgagaaggacttccagggaatgctcgagtactac
aaggaggaagagccgctgctcatcagaaatctcattatagacttgaagcctgagcagatg
tcttccacggttccttgtctgcctgcgtatatcctcttcatgtgcatcagacacgcagac
tacatcaatgatgatcagaaggtccactctctcctcacctccaccatcaatgggatcaag
aaggtgctaaagaagcatcacagtgaatttcagattgcatctttctggctgtccaactcc
agccgactgctccattgcctcaaacagtatagcggagacgagggcttcatgaccagcaat
aatcccaagcagaatgagcattgcctgaggaactttgacctcaccgaataccgccaagtt
ctcagcgacttgtccatccagatctaccagcagatgataaagattgcggaaacacatatg
cagccaatgatagtgtctgctatgttggaaacagaaagcatccaaggcctatcaggggta
aagcaaactggctacagaaagaggaccactagtatggcggatggggataattcctacagc
ctagaaaccgtcattcgccagctgaacgccttcaacagcatcatgtgtgaccatggcctg
gatcctgagatcatccagcaagtctttaagcagctcttttacttgattaatgccgtcacc
ctgaataatttactgctgaggaaggacgtttgctcctggagcaccggaatgcagctcagg
tataatatcagtcagttagaagaatggctgcgggggaagaacctgcatgcgagcggcgct
gctcaaacgatggagccgctgatccaagccgcacagttgctgcaaattaaaaagaagaca
gaggaggacgcggaggccatatgctttttgtgcacagccctgaccacccagcagattgtg
aagatcctgaatctgtacacaccagtgaatgagtttgaagagcgcgtgaccgtgtccttt
atcagaatcattcaggctcagctgcaagagcggaacgatcctccccagctactaatggac
tctaaatacatgttcccagtcctgttccctttcaacccctcggccattattttagactcc
gttcagatccctccttccctcaaactggatttcctcttgaaagtctga
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integrated database retrieval system
