Xenopus laevis (African clawed frog): 108706574
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Entry
108706574 CDS
T01010
Symbol
limch1.S
Name
(RefSeq) LIM and calponin homology domains-containing protein 1-like isoform X1
KO
K24422
LIM and calponin homology domains-containing protein 1
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xla04990
]
108706574 (limch1.S)
Domain-containing proteins not elsewhere classified [BR:
xla04990
]
LIM domain-containing proteins
Other lim domain-containing proteins
108706574 (limch1.S)
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Gene cluster
GFIT
Motif
Pfam:
DUF4757
CH
LIM
Motif
Other DBs
NCBI-GeneID:
108706574
NCBI-ProteinID:
XP_018098605
Xenbase:
XB-GENE-17333739
UniProt:
A0A8J0U7W4
LinkDB
All DBs
Position
1S:25906409..26079912
Genome browser
AA seq
1912 aa
AA seq
DB search
MASSDSLKGEEIPQPPESPPDTACREAQKWIEQVTGKSFGDRDFRTGLENGILLCELLNA
IKPGLVKKINRLPTPIAGLDNITLFLRGCKELGLKESQLFDPGDLQDTANRTTGRTSDCN
RKLRNVLITLYWLGRTANGCSSYSGTNLDLKEFEGLLAQMRKENEEIESPKRSIRDSGYI
DCWDSERSDSLSPPRHGRDDSFDSLDSFGSRSQQTPSPDVVLRGSSDGKGSDSESDLPHR
RIPDVRKDDMSARRVSYGENKAFVPFNQYLPNRSNQTAYIPAPLRKKKAEREDYRKSWST
ATSPLGGERPFSPKQSPIIKEEQNELQCEGEGTKQMIALKEPCLEADNRIERIDQGGVVG
QSPAKDDIPNDVEEVRKCNKLQQAGIKVLPATSRYSSQSQVSEVIDGAPDIVLRKENAFL
KAYEGMGSDSEEEEECKIPDVQRDDLATRRARMNQPKSPMQFNQYIQGSYLNKTRATGKQ
DSSKTSTPTSPKMSQNNSAASNRENQGPPLSDICKEKAFPKYSDKGDVEAEQEKIPDIQK
NDLAKRKAKASVSLPKEPSAFAAVSITKADMETWQRLQVSSEDSEHMLDRQADQQEQTSG
IDVTRATNDDFGRRKLSLQEKRARNKQKFVHFGPVTEIDQQKWDRLCIAKAESGQDTEEE
KGSIKSDGAASHISASASAQCYQPQQKVIIGPVLPNESRSTPEGLGSPAPPENASEIQCL
ETQRDDMMARRKGSFQKLSRTNGDSPVSNQYAIHSQLHEEKCEALEPSDEKQELFLDVNP
QLRKLLLSDLANTSSKATSPVLGIKPPNVAKEAEDVKDAIKEGDSNTQKDPDFKIPEDNN
AVAPDPKKDDMMTRKISVGQKPSSVSLGHFLPVPFSLQRREEENKQTSGIISSTIKPKNA
AHVGISDVPSKPLNQKETEEHSNLAYDVTRNQGCNSVEARQQDGLERETIQSPDLTNADS
KTTIPALGNTSPAITKEADVVKGDSVTIQQPNSAISKDNTMAPDPEKDDMMTRRISVTQK
PVVGLGHFLPVPFSLQQKAEEKKSTSSTLSSKIKSNNSTQAPAVGSSDLPNKPLDPSETE
KNVELPTDVTCDQTSIDRISDGNPTGKALDTQTEDALETCDHELFRFSPRSALSDDTESM
SMCDMRYEEEGSMLPHSKAHYDHLEQVNSLLKEEDDTWQNDLARWKTRRRSASQDLIKKE
EERKKIERLMSGETELSERRKSIKTYREIVKEKERRERELHEAYKNAKTRDEAEHILQSY
IEKFTISEAVLEGLVMPTFLEKSQSVEPSLLSSSEDPNPLKYLREQSLPSPKYTSTVEAT
VFPSSPCEAKSPTGLISPSKNISSKTVPMLTAKPYSQPKNTQEVLKTFKVDGKVNLNGVE
EQKGKEHESQTFAPSLTQSQMFEGVARVDAPVVEIKKDIASIELNLARPNNLNLLHESKS
LHEDSNHINQEDEPDSLVLEESLYSVEQLSEGNTQSNSTTQDVPAVSSIEIPPLTVNGTD
TEDERKVEAAELIMHWSLDSNYSEAKENSLQPLKSSENVDESSKIKVNESSNKVQLNITL
QTRNAWRRSQFFLQPVDIECTEKSPALVPNLNSPNRFCTWDPEEERKRQEKWQQEQERLL
QERYQKEQEKLKEEWEKAQKEVEEEERKYYEEERKIIEDTVVPITLSPNSNVHFNISERN
GNFIPALTDHAKRDQENNNEKLMAESNRAIKSEIHTQSNVTQQQLFYTQEGSMLAAEETQ
IKGKTEKRDAEPCNHVQSNECNTPTRLTLQAGFKQATSSESGLPGDLESLKTPVDENAAH
QNMSSLISTRGTDSKEGTVNSSQLSTSQCQSPNRSVSGKKLCSTCGLPLGKGAAMIIETL
SLYFHIQCFKCGLCKGQLGDTITGTDVRIRNGLLNCNDCYIKSRTAGHPTPL
NT seq
5739 nt
NT seq
+upstream
nt +downstream
nt
atggccagctccgactcactcaaaggggaagagatcccacagccgcccgagtctccccca
gacacggcttgtagggaggcacagaagtggattgagcaagttaccggcaaaagctttggt
gaccgagactttaggacgggactggagaatggaatccttctgtgcgagttattaaatgct
ataaaaccgggacttgtaaaaaagatcaaccgacttcctactcccattgctggattggac
aatataacattatttctaagaggttgcaaagagcttgggctgaaagaatctcagctgttt
gacccaggtgacctacaggacacagctaacaggacaacaggcaggacttcagattgcaac
agaaaactaaggaatgtactcatcaccctgtactggctggggagaactgcaaacggctgc
tcatcctatagtggcaccaacctggacttgaaagagtttgagggattgctggcacaaatg
agaaaagaaaatgaggaaatagagagtccaaaacgcagcatacgggacagtggctacata
gattgttgggactcggagagaagcgactccctctctccccccaggcatggcagagatgac
tccttcgatagtctagactcatttggatctcgatcacagcagacaccatctccagatgta
gtcctgaggggaagcagcgatggcaaaggaagtgactctgagtctgacctacctcaccga
aggatccctgatgtgcgaaaggatgacatgtctgccaggcgggtgtcctacggtgaaaac
aaagcatttgtgcctttcaaccaatacctccccaacaggagcaaccagaccgcctacatc
ccagcacctctgagaaagaagaaggccgagcgtgaagactaccggaaaagttggagcaca
gccacgtcccccctggggggagagcgaccctttagtcccaaacaaagcccaatcattaaa
gaagaacaaaatgagttgcaatgtgaaggagaagggaccaagcaaatgattgccttaaaa
gaaccttgccttgaagcagacaataggattgagagaattgatcaagggggtgttgtggga
caatcccctgccaaagacgacattccaaatgatgtagaggaagtgaggaagtgcaacaaa
cttcagcaagcgggaattaaggtcttgcctgcaacaagtcgctacagcagtcaaagccaa
gtttctgaagtcattgatggcgctccagacattgtgttacggaaagagaatgccttcctg
aaggcatatgaagggatgggctctgattcagaagaagaagaagagtgcaaaatacccgat
gtacagcgagatgacttggccacaagacgtgcaaggatgaaccaaccaaaaagcccaatg
cagtttaatcagtatatacaggggtcctacttaaacaaaaccagagcaacaggaaaacag
gacagttccaaaacttccactccaacttctccaaaaatgtctcagaacaacagtgcagcc
agcaacagggagaaccaaggtcccccgttatcggacatctgcaaggaaaaggcatttcca
aaatactcagacaaaggagatgtagaagcagaacaagaaaaaattcccgacattcagaaa
aacgacctggcgaaacgcaaagccaaggcttctgtttcactgccaaaggaaccatcggcc
tttgcagcagtttcaattacaaaggccgacatggaaacttggcagaggcttcaggtgtct
tctgaagatagtgagcacatgcttgacagacaggctgaccagcaagagcaaacatccggg
attgatgtgactagagcgacgaatgatgactttgggaggagaaaattgtccctgcaagag
aagagggctcggaataaacagaagttcgtacattttggcccagtgactgaaattgatcag
cagaagtgggatagactttgtatagctaaggctgaatctggccaagatactgaagaggag
aagggcagcattaagtctgatggagctgccagccatatatctgcctctgcttctgctcag
tgctaccaaccccagcagaaagtcatcatagggccagtgttgccaaacgagtcaagatct
acgccagagggacttggttcaccagctcctcctgaaaatgcaagtgaaatccagtgcctt
gaaacacagagagacgatatgatggcaaggagaaaaggttcattccaaaagctttctaga
accaatggagactctccagtgtccaaccaatatgcaatccatagccaactacatgaagag
aagtgtgaggcactggaacccagtgatgaaaaacaagaactctttctggatgtcaaccct
caactgagaaagttactgctatcggacttggcaaataccagttcaaaagcaactagtccg
gtactggggatcaagccaccgaatgtagctaaagaagccgaagatgtaaaagatgccata
aaggaaggtgactctaacacacaaaaagatccagacttcaagatcccagaggataataat
gcagttgctccagacccaaaaaaagatgacatgatgactagaaaaatttcagtgggccag
aagccatcttccgtcagccttgggcacttccttcctgttcctttttctttgcagcgcaga
gaagaggaaaataaacaaacaagcggcatcatatcgagcaccataaagcccaaaaatgct
gcccatgttggaatttctgatgttccttctaagcccctcaaccagaaagaaacagaagaa
cattctaatttagcatatgatgtgactcgcaatcaaggctgcaacagtgtagaggcccga
caacaggacggtcttgagagggaaacgatacagtctcctgacttgaccaatgctgattca
aaaacaactattcctgctttgggcaacacctctccagcaataacaaaagaagctgatgtt
gtaaaaggtgactctgtcacaatccagcagccaaattcagctatatccaaggacaataca
atggcaccagacccagaaaaagatgacatgatgacaagaagaatctcggtaacccagaag
cctgttgtaggccttggccacttccttcctgttccgttttctttgcagcaaaaagccgag
gaaaagaaatcaacgagctctaccctatcgagcaaaataaagtcaaataattccacccaa
gctcctgcagtcggcagttctgaccttcctaataagcctctcgatccgagtgaaacagag
aaaaatgttgaattaccaaccgatgtgacttgcgatcagacctccattgaccgaattagt
gatgggaatcccaccggtaaagcgttagatacccagacagaagatgctcttgaaacgtgt
gaccatgagttattcagattcagcccaagatctgctctgtctgatgatacagagagcatg
agcatgtgcgacatgaggtatgaagaagaggggagtatgttgcctcacagcaaggcacac
tacgatcatctagagcaggtcaacagcttgctcaaggaggaggatgacacatggcaaaat
gaccttgctcggtggaagacaaggaggagaagcgcatcacaggatctgatcaagaaagag
gaggagaggaagaagattgagagactgatgagcggagagactgaactgtcagagcgtagg
aaaagcataaaaacgtatagagagattgtgaaagaaaaagaacgtcgagagagagaactg
cacgaagcctacaaaaatgccaagaccagagatgaggctgaacatatattacagagctac
attgaaaagtttacaattagcgaagctgttcttgagggattagtgatgccaacattttta
gaaaaaagccagtcagtggagccaagtttattgtcttcatcagaggacccaaacccgctg
aaatacctgagggaacagtctttgccatcaccaaaatacacttccactgttgaagcaacg
gtctttcccagcagcccatgtgaagcaaagagtccgacaggtctaatatcaccaagcaaa
aacattagctcaaagactgtgcctatgctaacagccaagccttactcccagcccaaaaac
acccaggaagtcctcaagacatttaaggtggacggaaaggtgaatctcaacggggtggag
gagcagaagggaaaggaacatgaaagccagacatttgccccatcactaacccaatctcag
atgtttgaaggtgtagccagagttgatgctcctgttgttgaaataaagaaagacatagct
tccattgagcttaatctggccagaccaaacaacctgaatttgttacatgaatccaaaagt
ctccatgaagacagtaatcacataaaccaggaggatgaaccagattctcttgtacttgag
gaaagtctttactctgtggaacaattgtcagaaggtaacacacagtctaatagcacaacc
caggatgtacctgctgtgagcagtatagagattccaccattgactgtcaatgggacggat
actgaggatgagaggaaggtggaagctgccgagctgattatgcattggtctctggactcc
aattacagtgaagccaaagaaaattccttacagcctttaaaaagttctgaaaatgtagac
gaatcctccaagattaaagtgaatgaatcatcaaacaaagtacagctaaacattacgctt
cagacccggaatgcctggagacgatcccagttttttttgcagccagtggatatagaatgt
acagagaagtcaccagcactagtacccaatctgaattctcctaaccgattctgcacatgg
gacccagaagaagaacgcaaaaggcaagagaaatggcagcaggaacaggaaaggcttctc
caggagaggtaccagaaagagcaggaaaaacttaaggaggaatgggaaaaagctcagaaa
gaagtagaagaagaggaaaggaaatattatgaagaggaaaggaagataatcgaagacact
gtggtacctatcactttatccccaaattctaatgtgcactttaatatctctgaaagaaat
ggaaactttattccagcacttacagaccatgccaagagagatcaagaaaataacaatgaa
aagctaatggcagagtccaacagagcgataaagagcgagatacatacgcagagcaacgta
acacagcagcagcttttctatacacaggaggggtcaatgcttgctgctgaagagacgcaa
ataaagggaaaaacagagaagcgggatgcggaaccatgcaaccatgtgcagtctaatgaa
tgtaacacacccaccaggttaaccttgcaggcaggatttaaacaagcgacgtcatcagag
tcaggtctgcctggggatcttgaatcactcaaaactcccgtcgatgaaaatgctgcccat
cagaatatgtcttccttaatatccacaaggggaactgattccaaggaagggacagtgaat
tcttcacagttgtctacatcacaatgccaatcaccaaacaggtctgttagtgggaaaaaa
ctgtgctccacatgtggacttcctctaggcaagggagctgccatgataattgaaaccctc
agtctttatttccacatccagtgcttcaagtgtggactgtgtaagggacaacttggagat
acgatcaccggcacggacgtcagaattcgaaatggcctgctgaactgcaatgactgttac
ataaaatccagaacggctggccaccccacccctttgtga
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