KEGG   Xenopus laevis (African clawed frog): 108706905
Entry
108706905         CDS       T01010                                 
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
  KO
K02927  ubiquitin-large subunit ribosomal protein L40e
Organism
xla  Xenopus laevis (African clawed frog)
Pathway
xla03010  Ribosome
xla04120  Ubiquitin mediated proteolysis
xla04137  Mitophagy - animal
xla04140  Autophagy - animal
Brite
KEGG Orthology (KO) [BR:xla00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    108706905
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    108706905
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    108706905
   04137 Mitophagy - animal
    108706905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03011 Ribosome [BR:xla03011]
    108706905
   04121 Ubiquitin system [BR:xla04121]
    108706905
Ribosome [BR:xla03011]
 Ribosomal proteins
  Eukaryotes
   Large subunit
    108706905
  Archaea
    108706905
Ubiquitin system [BR:xla04121]
 Ubiquitins and ubiquitin-like proteins
  Ubiquitins
   108706905
SSDB
Motif
Pfam: ubiquitin Ribosomal_L40e Rad60-SLD Ubiquitin_2 Rad60-SLD_2 DUF2604 Ubiquitin_5 zf-C4pol TBK1_ULD OTU1_UBXL Dsc3_N UBL_UBAC1
Other DBs
NCBI-GeneID: 108706905
NCBI-ProteinID: XP_018099189
UniProt: Q6GQF3 A0A974I1H6
Structure
LinkDB
Position
1S:97001761..97007089
AA seq 128 aa
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKVK
NT seq 387 nt   +upstreamnt  +downstreamnt
atgcaaatcttcgtaaaaacccttactgggaaaacaatcacccttgaggttgagcccagt
gatactattgaaaatgtgaaggccaaaatccaggacaaggaaggtattcctcctgaccag
cagcgtttgatctttgctggtaaacagcttgaagatggacgcactctgtctgactataat
atccagaaagagtccacattgcacctggtgttgcgtctgcgtggaggtatcatcgagcct
tctcttcgccaacttgctcagaaatacaactgtgacaaaatgatttgccgcaagtgctat
gcccgccttcacccccgtgctgtaaattgccgtaagaagaagtgtggacacaccaataac
ctgcgtcccaagaagaaggtcaaataa

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