Xenopus laevis (African clawed frog): 108707609 Help Entry 108707609         CDS       T01010                                  Symbol dchs1.L Name (RefSeq) protocadherin-16 isoform X1   KO K16507   protocadherin-16/23 Organism xla  Xenopus laevis (African clawed frog) Brite KEGG Orthology (KO) [BR:xla00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:xla04515]     108707609 (dchs1.L) Cell adhesion molecules [BR:xla04515]  Cadherins   Cadherin related    108707609 (dchs1.L) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_CELSR2_9th Cadherin_2 Cadherin_4 TMEM154 CADH_Y-type_LIR Big_9 EphA2_TM Motif Other DBs NCBI-GeneID:  108707609 NCBI-ProteinID:  XP_041438820 Xenbase:  XB-GENE-17335680 UniProt:  A0A8J1MCL0 LinkDB All DBs Position 2L:190546976..190588527 Genome browser AA seq 3240 aa AA seqDB search MLAFTLCLLLHMACSPSSASLGTLGLHIDEEQPAGTIIGDISAGLPPGSSGYMFFISAQE GSGVSTDLDIDEHTGIIKTAQVLDREKRNHYSFIAVTPEGITVEVDIHVDDINDHSPMFI KERSELSIPEHTPLGTRYPIDPAMDSDSGVLSTQGYLIRSGDSMQMFRLETRRVSNGVLD VELVVSSDIDRENQSRYSLILEAYDGGSPSRSSQMRLDISILDINDHAPVFNQSRYHALI SESLLPGASVLQVYATDADQGPNGEVTYEINRRQSDPESYFTINAQSGLIQINKPLDYET RKVHELVVQAKDGAEQPEVGTAFVSIQVRDSNDNQPSMTIIFLSEDGAPRVSEGATPGQF VARISVSDPDYGEHPDVDVTLEGGEGKFALTTKDSIIYLICVDKLLDREERDSYRLRVLA TDAGTPPLRAESSFVLEVTDVNDNPPVFDRQEYSHTVPEAVHPGTFLLQVTARDKDQGAN GVVRYSLLPTPWFSINPDTGVITTAAPLDYEQEPHPKITVVASDQGQPSLSSTALVRIHL LDVNDNEPVFSSPVYNATLSEGTARGSCFLQVSALDSDSRSLGSVSYSLSPTSPHQFRVH PDNGNICTTEALDRDDGERSFLLHVTATDGGGLSAACLVHVTLEDINDNPPVFYPLDYGG SISVLSPPGTTVLSVSAHDKDEGTHGTITYIITSGNNPPLFHIHPDSGTLLVARSLSAWA GSVVYVEVGAQDGEGVRAEVNARVNISILPGTAPVPTFLQSHYQITVAEDTPLGASIGSI TATTPTGVPGPVLYSISSGDPRGFLALDPHSGLLSIIRPLDREQAANLVVEVQARSGAPP AYTRARVTIYITDVNDNPPVFPSPFHTLRLQSPISIGSIIFRAQATDPDTGSNGQVYYEL DTQGPFSIDSSGQLRVTGQLSQERYDIRLLALDRGSPQLSSVMELTVLMIELQKEPACGA SDYRVEVREDSPPLSRLLQVRAQPPGVGEGPLIYRLRPDADSVGFSIEADTGWIYVRGAL DRESRETYVLAVLASAGPATHTATCTVRVRVTDENDNSPRLSEERFFFSVMENRPAGETV GRISATDRDTGPNGRVSYRLPPLETGFHINPHTGEISTRRILDREIQATYQLLVIAQDGG APPRSVTGTVHVTVLDENDNAPMFLHPNAGREISLQVMEGKKSGMFIASLQAKDPDEGEN GTVRYSVTGPWAERFTLDRNTGELRTAAGLIQADRSLYTMTLRASDCGVPKRSTETTLHI QVIPSSRYPSKLNPSTLVLSPMEGLAPGSLLGSLAPKIPHGSRIYTLLDDPHGIFMVDGQ TGSIFLVGELDFESQPRFSFRVSVEEVREVSVGYMPPHVVHIEVEVQDRNDHSPIFPEDP LTLVVPEDAQVGSSVFTFQASDHDGPGPNSHVRYSLLRQDPGSPGSTFRLDAETGVLYVA QALDREEVPSYLLVVEASDQAVNVSQQRSTSVTARVFISDRNDHPPQFINPSLVWLPEDL PVGSTAIYVVSQDPDLGDNGKVGYQLVGGNDEGKFQLHPSSGALSVVRTLDRETTKGYNL TVLAMDHGSLRLSSTQTLSVSLLDVNDEAPSFEKPHYDAQVQENQAAGTTVLRLVAIDRD VGQSGHVTYGGVSGDEFALDPETGVLTTKVPLDRETKELYKLTIYARDGGSPPRVSEVGV QVSVGDENDHTPTFEKDLVFLEVPENQEPLELCTLSAWDPDGGDNGHLEYRLIDGDSSGD FTLDSTTGKLSTSRPLDRETTSKYHLVVSVSDGGNPPLSATAMVNINVLDINDNTPTFSS SEFSAEIPEEAPVGSLVLHLSALDPDDGPNGQTTYHLSNGTQGAFHIDPLTGRITTASQL DRERRATYTFLVWAMDSDATGHRSTEATVTVLVRDVNDNAPAFLRSPFHLNLSRNTPTKR SIGAMKAEDKDAGANASILYRLAPASAKGGFSVDPYTGEVRLLEPLNGMSSKERTVFVQA TDLGEPPLSSTAVLVVHLREEAPQGPRFPQETIEVSLPENSPEGSVVGTMTAAHTGGSTG RISYSFLSGNENGVFRIHATTGQVTVVQAAMLDYEQNPRHKLVVQAETQQHFSFASLTVS LLDLNDNAPRFQLPHYTAYIQEAQADGSHIIQVLAEDPDQGLNGQVLYSLDQSQAMGDLF RIDSQTGAITTAAILDREIWAQARLVVIATDRGSPPLSSSASLTVLVMDVNDNSPTIPVQ LQLSVPEDAVIGSEILQVTGNDVDSGPTLSYTLLVDGAMEGTFTILRYGGQIWLSRQLDY EDRKSYTLTVQTSDGKHMTHTDLTLTLEDVNDNSPEFSKSLYQVSILEHTGAGTSLFTIT ATDEDSGDNGRVSYRILSPVGGAFHIHPDNGTIFTNKLVELDPQSPLVDILIEARDHGFP SLASLTTVQFLIVDANDHAPTFSQFQYSASVPEDLPLGSTVLILEVTDEDFTQENSGLDY TILSGNTGNAFQVQSGMRFWNGRFQQIASIIVTDSLDFEAISFYNLTLGASDRGVPQRSH SVPVLITVLDVNDNPPVFPHPLYSVLLSEEAPVGSEVLRVLAQDSDSGNNGMVHYSITSG DENRLFQINEATGAIRLARHLDRERQALHALVVLALDGQGGQANFALVPVTIEVRDINDN KPYFPVQILTTSIRENQPANTPLTKIHAIDLDTGVYGQLFYTMLDLAVAGSGMLTGKDMF IVNRTSGELRSKQSFDYERTKVFNMVVKAVDAGNFSATVTVQVLVTGEDEYNPVFISPFF NFEVPEGSVKGESIGHVQATDEDEGADGVVLYSFSKTSPYFGINETTGHIYLKTDSQRHR SGRSKRETREMTLEVHAHSPLPSSRVATAQVTVDVTHTSFGLAPDLNLLLVVSVASSLAV VVVLAVVAIVLVICRSRGINKKQQQEEDDAQLDTLQRSTLQRMGHDKSALSSGDRIYHQA LPGYTLDSSVGNASYTRGGSLDPSHSSGRGSAEAAEDDEIRMINEYPRVASITSSMQEHI SARGPDSGIQQDADQLSEISCDPSMDTEQWFKSKKGSSQSQLYRDDGGGGGAFVGMGCGL NMSHLKDYSFPEDGKPSVEGSLTAIVASDEELRGSYNWDYLLNWCPQFQPLASVFMEIAR LKDESALRRPFQLKPKSVPQPRIDPPPLITSVAHPGAKTVPPKPAVVRAFPNFSSLRRSP IINEASLTSSAIPPSFSPSLSPLAARSPVVSPFGISQGPTASILSTEHNLDPVGDSELQI NT seq 9723 nt NT seq  +upstreamnt  +downstreamnt atgctggctttcaccttgtgcttactgctgcacatggcatgttcaccctcttctgcctcc ctgggcaccctagggttgcacatcgatgaggagcagccggctggcaccatcattggggac atcagcgctgggcttcctcctggatctagtggctacatgttctttatctctgcacaggag ggcagtggcgtcagcacggatctggacatagatgaacacactggcatcatcaagacggca caggtcctagaccgtgagaagcgcaaccactatagtttcattgcagtcacgccagaaggt atcactgtggaggttgatatccacgtggatgatatcaatgaccattctccaatgtttata aaagagagaagtgagctaagtatcccagagcacacccccttgggaactcggtaccccatt gatccagcgatggactctgatagcggggtacttagcactcaaggctacttgatccggagt ggagattccatgcagatgtttcggttagaaacccgtagagtttccaatggggtcctggat gttgagcttgttgtcagttcagatatagatcgtgagaaccagtcaagatattcgcttatt ttggaggcttatgatggaggctcacctagccgcagttcccagatgagactagacatttcc attctagacatcaatgaccatgcaccagtcttcaaccagagtcgctatcatgcactgatt tcagaaagcctccttccaggggccagtgtcttgcaagtctatgccactgatgctgaccaa ggtcccaacggagaagttacctacgagatcaaccgcagacaaagtgacccggaaagctac tttacaataaatgctcaatcgggcctcatccaaatcaacaagccattggactacgagaca agaaaagttcatgaactggtggtacaagccaaggatggagcagaacagccagaggttggt acagcctttgtgtccattcaggtacgagactcaaatgacaaccaacccagtatgaccatt atttttctcagtgaggatggggccccccgagtgtccgaaggagctaccccagggcaattt gtggctcgtatttctgtgtcggacccggattatggagaacacccagatgtagatgtcact ctggaaggaggagaaggcaagtttgccttgaccaccaaagacagtatcatctacctcatc tgcgtagacaaactgcttgaccgagaagagagggactcttaccgtctgagagttcttgca actgatgcaggaacaccccctctaagggcagagtcttcatttgtattggaagtgactgat gtcaatgataaccctcctgtatttgaccgccaggagtacagccatactgttccagaagct gtgcatccgggcaccttcctccttcaagtaacagcccgtgacaaagaccaaggggcaaat ggagtagtgaggtatagtctcttgcccaccccatggttcagtatcaacccagacactggg gtaataacaactgccgcacccttggactatgaacaggaaccccatccaaaaattactgtt gtagcgtcagatcagggacagccatcacttagctccacagcccttgtgaggatccatcta cttgatgtcaatgataatgagcccgtcttctccagtccagtttataatgccaccctgagt gagggcacagcacggggcagctgcttcctacaggtgtcggcgttggattcagacagcagg agtttggggtcagtctcttactcactcagcccaacgtccccccatcagtttcgggtgcac cccgataatggcaatatctgcactactgaggcgctggaccgggatgatggggagcgatct ttccttctgcacgtgaccgctactgatggggggggtctctctgctgcgtgtctcgtgcac gttaccctggaagacattaatgacaaccctccagtcttttatcctctggattatgggggg agtatcagtgtcctcagccccccgggaaccacagtcctgagtgtctcggctcatgataag gacgagggaacccacggcaccatcacctacatcatcacttctgggaacaacccacctctg ttccacatccaccccgactcaggcactctcttggtggcacgctctctctctgcttgggcc ggctctgtggtttatgtggaggtgggggctcaggatggagaaggggtaagggctgaagtt aatgcccgtgtcaatatcagcatcctccctggcactgcccccgtgcccaccttcttgcag tctcactatcagatcactgtggccgaggatacccccctaggggcaagtattgggagcatc actgcaactacccccacaggtgttccgggcccggttctatactccatctcctcgggggat ccccgcggtttccttgcactggacccccactctggtctcctctctattatccgccctttg gacagggaacaggctgcaaatctggttgtagaggtacaggctcgcagtggggccccccca gcttacactcgagcccgtgtcaccatatacatcactgatgtcaacgacaaccccccagtg tttccttctccattccacactctacggctccagtctcccatctctatcggctccattata ttcagggctcaggccacagacccagacacggggtccaatgggcaggtttattatgaactg gacactcaggggcccttcagtatagacagctctgggcagttgcgtgtcactggccaattg agtcaggagcgctatgacatccggttgctggccttggacagagggtcccctcaactctcc tcggtgatggagctcacagttttgatgatagagctgcagaaagaacctgcttgtggggcg tctgattaccgagtggaggtcagagaggacagccccccactcagccgtctcttgcaggtg cgggcacaaccccctggggtaggggaaggaccgcttatctatcgcctgaggcccgacgct gattctgttggcttcagtattgaggcagacacaggctggatttatgtgcgaggagctctg gatcgagagagccgggagacctatgtattggctgttttggcctcagcggggcctgccact cacactgccacctgcaccgtacgagtccgagtcacagatgagaatgacaacagcccacgg ctgagtgaggagaggttcttctttagcgtcatggagaatcgtccagcaggggaaactgtt ggtagaattagtgccactgatagagataccggccccaacggtcgagtgtcttacagactc ccacccctggaaactggcttccatatcaacccacacacaggtgagatttcaaccaggagg atcttggaccgggagattcaggccacctaccagctcctggttattgctcaggatgggggg gcaccccccagaagtgtcactggcactgtacatgtcacagtgttggacgaaaatgacaat gcacctatgtttctgcaccccaatgcggggagggaaatatccttacaggtgatggagggg aagaaatcgggaatgttcattgcatccctccaagccaaggaccctgatgagggggagaac gggacagtgagatacagtgtgacaggaccctgggcagagagattcactttggaccggaac acgggggaattgaggacagcggctggactgatacaagcagatcgctccctctatactatg accttaagagccagtgactgtggggtcccaaaaagaagcacagagaccactcttcatata caggtcattccatccagtcgttacccttcaaagttgaacccaagtaccctggttctctct cccatggaaggactggctcctggttcccttttaggatccctagctcccaaaataccacat ggctcccgaatttacacgttgcttgatgaccctcatggcattttcatggttgatggccag actgggagcattttcctggtgggagagttggattttgaatcacagcccagattcagtttt cgtgtgagtgtcgaggaggtgcgtgaggtgtctgtagggtatatgcctcctcatgtggtc catattgaggtggaggtgcaagaccggaatgaccattcacctatatttcctgaggacccc ttgacattagtggtaccagaagatgcccaggttggatcctctgtattcacattccaagcc tctgaccatgatggtccaggacctaatagtcacgtgaggtattccctactgcgccaagat ccagggtccccaggtagcaccttccggctggatgcagaaactggggtactgtatgtggca caagcattggaccgtgaggaagtgccctcatatctcctcgtggtggaggcctcagaccaa gcagtaaatgtcagccagcaacgttcaacctctgttactgcccgagtattcatcagtgac cgcaatgatcaccccccacaattcataaatccatctctggtgtggctacctgaagacttg cctgttggatccaccgcaatctacgtggtctcacaggacccagacctgggcgataatggc aaggttggctatcagcttgttggaggaaatgatgagggcaagttccagcttcacccaagc tcaggtgccctctctgtggtcaggacgctcgatcgagagacgactaaagggtataatctg acggtcctggcaatggaccatggctcactccgtctctcctccacccagacactttcagtt tcccttctggatgtgaatgatgaggctccatcctttgagaagccacattatgatgctcaa gtgcaagaaaaccaggctgcgggcacaactgtactgagactggtggccatagacagggat gtgggccagagtggacatgtcacctacggaggtgtatctggggatgaatttgcacttgat ccagaaactggggtcctcaccaccaaagtaccactagaccgggagaccaaggagctctac aaactgacaatctatgctcgggatggaggttccccacctcgagtgtctgaggttggggtg caagttagtgtgggggatgagaatgaccatactcctacatttgagaaggaccttgtgttc ctggaggtaccggagaatcaggagccattggaactctgcactttgagcgcttgggaccct gatggaggagataatgggcaccttgagtaccgactgattgatggtgattcctctggggac tttacactggattccaccactgggaaactctccacatctcgccctttggacagagaaacg acatccaagtaccacctggtggtgtctgtctctgatggagggaatccgccactcagtgct accgctatggttaatatcaatgtgctggacataaatgacaacacccccaccttcagctca tctgaatttagtgctgagattccagaggaggccccagtaggcagtctggtcctgcacttg tccgctcttgatcccgatgatggtcctaacggtcagaccacatatcatctctcaaatggg acacagggagctttccacattgatcctctcaccggccgcatcaccactgcctcccagttg gaccgtgagcgtagggcaacctacacctttctggtatgggccatggattctgatgccact gggcatcggagtacagaggccactgtaacggttcttgtcagagatgtgaatgataatgcc ccggcctttctgcgcagtcccttccatctcaacctttctcgcaacacccccaccaagaga tccatcggtgccatgaaagccgaagataaagatgccggtgccaatgcctccattttgtat cgcttggcaccagcctcagctaaaggaggtttctctgttgacccttatactggtgaggtg aggctgcttgagccactgaatgggatgagctccaaagagcgcactgtgtttgtgcaggcc actgatttgggggagcctccactctcttccactgctgtgctggttgtccacctgcgtgag gaggcaccacaggggccacgtttcccacaagagaccattgaagtcagtctccctgagaat agcccagaaggatcggtggttgggactatgacggccgcacacactggtggatccactggg agaatctcctacagcttccttagcgggaacgagaatggggtgttccgtatccacgcaact acaggacaagtgacagtagtgcaggcagccatgttggactatgagcagaacccccgccat aagctggttgtacaggccgagacccagcagcacttcagctttgcctccctgactgtcagc ctgttggacctgaatgacaatgccccccgcttccagctgccacactacacggcctacatc caagaggcacaggccgacgggagtcacatcatacaggttttggcagaagatccagaccaa ggactgaatggtcaggtgttgtactctttggaccaatcacaagcaatgggagatctgttc cgcatagactcccagacaggcgccatcaccactgccgccatcttggaccgtgagatttgg gcccaggctcgcttggttgtcatagcaacagaccgtggctccccccctctcagcagttcc gccagtctgacggtgttggtgatggatgtcaatgataatagccccaccatccctgtccag ttgcaactcagtgtccctgaagatgctgtgattggctcagagattctgcaggtgacaggc aatgatgtggattcaggccccaccctgtcttacacattgttagtggatggggcaatggag gggacatttacaatcttacgatatgggggtcagatctggttatcccgacagttggactat gaggatcggaaatcctacaccctgacggtacaaacgtccgatggcaaacacatgactcac actgacctcacactcacactggaggatgtcaatgacaactcacctgagttcagcaagagc ctctaccaggtctccatcttggaacacactggtgctggaacgtcactttttacaattaca gctactgatgaggattctggggacaatggaagagtcagctacagaattttgtctcctgtg ggtggagccttccacattcaccctgacaatgggaccatattcactaacaagttggtggag ctggatccacaatcaccattggtggatattttgatagaggcccgtgaccatggcttccca agcctcgcctccctcactactgtgcagtttctcattgtggatgccaatgaccatgcccct acattctcccaattccagtacagtgcatctgtgcccgaggatctcccacttggtagcact gtccttatcttggaagtgaccgatgaagacttcactcaagagaactctggccttgattat actattcttagtggaaacacaggtaatgcctttcaggttcagagtggaatgcgattctgg aatggacgctttcagcagattgcctctattattgtaacagactctttggactttgaggcc atttccttttacaacctgacacttggagcctcagacagaggtgttcctcagaggagtcac tctgtgcctgtgttgatcactgttcttgatgtaaatgataatcctccagtttttcctcat cctctgtatagtgtcctcctaagtgaggaggctcctgtaggttctgaggtgctacgagtg ctggcccaggactctgactctggtaacaatggtatggttcactacagtatcacttctgga gatgagaatcgactctttcagataaacgaggcaacaggagccatacgactggctcgccat ctggacagggagaggcaggccctacatgcacttgtggttttggctcttgatggtcagggg ggtcaagctaactttgcccttgtcccagttactattgaagtgcgagacataaatgacaac aagccttacttcccagtgcaaattctgaccaccagcatccgggagaaccaaccagccaat actcctctcactaaaattcatgctattgacttggacactggggtgtatgggcagctcttc tacacaatgctggatttggcagtggcggggtcagggatgctcacagggaaagatatgttc attgtaaacagaacatcaggagagctaaggtccaaacaaagttttgattatgagcgcaca aaagttttcaacatggtagtaaaagctgtggatgctggtaatttctctgccacggttact gttcaggttcttgtgactggtgaagatgaatataacccagtattcatttccccattcttt aattttgaagttcctgagggatctgttaaaggagagagcattggccatgtgcaagctacg gatgaggatgaaggggctgatggagtagttctttactctttctctaagacatccccatac tttggaattaatgagaccacaggccacatttatttgaagacggatagtcagaggcaccgc tctggacgttccaaacgagaaacaagggaaatgaccctggaagttcatgctcatagtcca ctcccttcttcacgcgtggccactgctcaagtaacagtggacgttacacacacatccttt ggtctagcacctgacctgaatttacttcttgtagtgtctgtggcttcatccttggcagtg gtggtagttctagctgtagttgccattgttctggtgatttgccgatctcggggcatcaat aagaaacagcagcaggaggaggatgatgctcagttggacactttgcagagaagcaccttg cagaggatgggtcatgacaagtcagcgttgtccagtggggatcgaatctaccatcaggcc ctccctggttacaccctggattcatcagtaggaaatgcctcttacactaggggtgggtca ctggatccctcacactccagtggtcgtgggtctgcagaagcagctgaagatgatgaaatt cggatgatcaacgagtacccaagggttgctagcataacttcctcaatgcaggaacatatc tcagcacgtggtcctgactctggtatccagcaggatgcagatcagctgtctgagatctcc tgtgatccttccatggacactgagcagtggtttaaaagcaagaaggggtccagtcagtca cagctctatagggatgatggaggtgggggcggagcatttgtgggtatgggttgtggactt aacatgtcccatctcaaggactactctttccctgaagatggcaagccctctgtggagggc tcactgactgctattgtggccagtgatgaagaattacgtggcagctataactgggattat ctcctaaactggtgtcctcaattccaaccattggccagtgtgttcatggagattgcccga ctcaaggatgagtcagcattacgaagaccgttccaactcaaacccaaatctgtccctcaa ccccgcattgacccacctcctcttataacttctgtggctcacccaggcgccaagacggtt cctcccaagccagctgtagtccgagcatttccaaacttttcatctttgcgccgctcccct atcattaatgaagcatcactcacttcttctgccataccccccagcttttctccatcactc tccccacttgcagcacgttctcctgttgtatccccctttggcatctcccaaggacccaca gcatctattcttagcacggaacacaaccttgacccagtaggggattcagagctacaaata taa

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