Xenopus laevis (African clawed frog): 108707882
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Entry
108707882 CDS
T01010
Symbol
scaf4.L
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108707882 (scaf4.L)
03041 Spliceosome [BR:
xla03041
]
108707882 (scaf4.L)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108707882 (scaf4.L)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
108707882 (scaf4.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108707882
NCBI-ProteinID:
XP_018101431
Xenbase:
XB-GENE-6486476
UniProt:
A0A8J0UDJ1
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All DBs
Position
2L:15024063..15111052
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AA seq
1346 aa
AA seq
DB search
MDAVNAFNQELFALMDMKPPISRAKMILITKSAIKAIKLYKHVVQIVEKFIKKCRPEYKV
PGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTATFHCLYTCPSEDKSKIVRVLNLWQKN
GVFRIEIIQPLLDMAAGAAAVDVMTDNSMMEEGSSPPSVMIPSELPDELQEPSPAAPVPQ
LPTPDAFAAVAQLFQSSQGQQLQQILQTFQQPPKPQSPVIDENVFAQVQAITSQLNAPAH
QPERKTAFDKLLDRFDYDDEPDAAEESKKEASSPLLSAPQHSQPPLQPFTFPADNMQPAA
YPSQLPGQVPNMDQFQPMMMGMQQEQLPQQQTPLPPNGQMLGFGMVPSQPFTPMVPPMVS
EPPAQGFRNTFQMQPNEMHVQKGHQQEMPMEVELPNIQENKRHMNEQSNSVSRSPKRRRS
RSGSRSRRSRHRRSRSRSRDRRRHSPKSRSQERRDREKEKERRQKGLPPIKSETVSICST
TLWIGQLDKKTTQQDVGSFLEEFGPIESINMIPPRGCAYIVMLHRQDAYRALMKLSRGNV
KVNQKAIKIAWALNKGIKSEYKQYWDVEIGVTYIPWNKVKPGQLEHFCEGGMLDNDTLCP
EWKALAKKPEPKDVSQNGATEAKGLGEASTAPQVLPLLSISVRAPIPAMQVPPLQPMSAH
QPVPSIPTPGVPAVQGLPPPQGLPPLQGVPPLQGMPLPQGLPPQGLPLPQGMPLHQGMPP
HQPIPGMGPLQHPGFPIGIPPPGFAPGVPPPLFMRPGFNPMHMPPGFLPPPGLPPPMTPP
VSIPLPTPGINIPTSTADTSSNDSSKDVSRANPKPMVPVRETKEEEVENADNGNGYKSTP
SGGPNNAPGPLNPLHGDPQEGPEQGQAQGAHPGPPQGPFTGQPQGPRHGTTEGAHEGSHQ
GLPDGTDHSPPEGHHYTLPENPHHGPSEISHHGPPEGPHHNPSEGPHLGPQEGPRSGPPE
GAHHGLPEGSHHGPQEGPNHGPPESQFHGPPEGLYHGPPEGPYHGPPEGPFHGPPQGPYH
GPPQGPFHGPLQGHYQGPHHGPPQGPHHGPPQGPHHGPPQVPHHGPPQGPHHGPPQGPHH
GPPQGPLHGPSQGPSSSPHPGPPSTGLLGARPGLIPLQRPPGVPSSNMQRFPMSQRPAPP
HMMNRGPPPGQGGFGMPPHGMRGPLRPQGHFPRQRGPEGHGGPEERDGRQFRGERQGFPP
GREAERFGRRSFGSRNEDDRERFGRRFDDPDHERPPNRGRSSWGRGSPSRERQRDSEERN
RWSMGHERERSHPRGRGEFLENRKSDAELDEDHKPLSSRMRNAETVTERNESKAEPVAKT
PTEEQPQTAKSSEEAERDVGSNPAKP
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgttaacgcctttaaccaggagctgttcgcactcatggatatgaaacctccg
atctctcgtgcaaagatgattctaattactaaatctgctattaaagcaataaagctctat
aaacatgtagttcagattgtggaaaagttcatcaaaaagtgtagacctgaatacaaggtc
cctgggctttatgtcattgattccattgttcgtcagtctcgccatcagtttggaattgac
aaggatgtttttggaccgagattcacaaagaatttaacagcaactttccactgtttgtat
acatgtccttcagaagataagagtaagattgtcagagtattaaacctgtggcaaaagaat
ggagtttttagaattgagatcatccagcccttactggatatggcagcaggtgcggcagcg
gtggatgtaatgactgacaactctatgatggaagaaggctcttcaccaccctctgttatg
atcccgtcagaactgcctgatgaacttcaagaaccatctcctgctgcacctgttcctcag
ttacctactcctgatgcttttgcagctgtagcacaattgtttcagagtagccaaggacaa
caactccagcagattcttcagacttttcaacaacctccaaaaccacagtctccagtgatt
gatgaaaatgtatttgctcaggttcaggccataacatctcagctaaatgcccctgcacat
cagccagagagaaaaactgcgtttgacaagttgcttgacagatttgattatgatgatgaa
cctgatgcagccgaggagtcaaagaaagaggcttcaagccctcttttgtcggcaccacag
cactctcagccaccactgcaacctttcacattcccagcagacaacatgcagcctgcagct
tatcctagtcagttgcctggtcaggtgccaaacatggatcagtttcagcccatgatgatg
ggtatgcagcaggaacaactacctcagcagcagactccgcttcctcccaatggccaaatg
cttggatttggtatggttccttctcagccctttacacctatggtaccacctatggtgtct
gagcctcctgcccagggttttcgaaacacctttcaaatgcagccgaatgaaatgcatgtg
cagaaaggacatcaacaggaaatgccaatggaagtcgaactgccaaatattcaagaaaac
aagcgtcatatgaatgaacaaagcaactctgtatctaggtcaccgaagagacgccgttct
cgttctggttctcgttcacgtcgctctcgtcatcggcgctcacgttcccgctctcgtgat
agacgtcgtcactcaccaaaatctcgttctcaagaaagacgggacagagagaaggaaaaa
gagcgaaggcaaaaaggacttcctcctattaaatcagagactgttagcatttgtagtact
acactctggataggacagctggacaaaaaaacaacacaacaagatgttggaagctttttg
gaagagtttggaccaattgaatcaataaatatgattccaccacgaggctgtgcatatatt
gttatgctccaccgccaagacgcatatcgtgccttgatgaaactgagcagaggaaatgtc
aaagtaaaccagaaggccataaagattgcatgggctttgaacaaaggaattaaatccgaa
tacaagcagtactgggatgtggagataggagttacatacataccgtggaataaagtcaaa
cccgggcagcttgaacatttctgtgaaggaggaatgttagataatgacacactatgtcca
gaatggaaagcactagcaaagaaaccagagccaaaggatgtatctcaaaatggtgcaact
gaggctaaaggattgggggaggcttctactgcacctcaagttctgccactattatccatt
tctgtacgtgcacccatccctgcaatgcaggtgccaccccttcaaccaatgtcagcccat
cagccagttccatccattccaactccaggggtaccagcagtacaaggattgccccctccc
cagggattacctcccttgcaaggtgttcctccattacagggaatgccactcccgcaaggg
cttcctccacaaggattgccactccctcagggcatgccactgcatcaaggcatgcctccc
catcagcctattccaggaatgggaccgcttcaacatcctggctttcctattggtattcct
ccccctggatttgcacctggagttccgcctccactatttatgagaccaggatttaatcca
atgcatatgcctccaggctttctgcctcctcctggacttcccccacctatgaccccgcct
gtttctattcctcttcctacacctggaataaacatcccgacttctacagcagatacttca
tctaatgactcttcaaaagatgtgtctcgtgcaaatcccaaaccaatggtacctgtaagg
gaaactaaggaggaggaggttgagaatgctgataatggcaatggatataagtctacccca
tcaggagggccaaataatgctccagggcccttgaacccacttcacggtgatccccaagag
ggcccagaacaaggacaagcacagggtgcccatccaggtccaccacaaggaccttttaca
ggccaaccacagggtccccgtcatggcacaactgaaggtgcccatgaaggttcccaccaa
ggcctgccagatggtactgatcacagccctccagaaggtcatcattacactctaccagaa
aatcctcatcatggtccttcagaaatctcccatcatggcccacctgagggtcctcatcat
aacccatcagaaggtcctcatctaggcccacaagaaggtccccgttcaggcccaccagag
ggtgcacatcacggtctgccagaaggttcccatcatggtcctcaagaaggtcctaatcat
gggccaccagaaagccagttccatggaccaccagaggggctttatcatggaccaccagag
gggccttatcatggaccaccagaaggtccatttcatggcccaccacagggtccttatcat
ggacctccacagggtcctttccatggacccctgcaaggtcattatcaaggaccccatcat
ggccccccacaagggccccatcatggccctccccagggaccccatcatggtcctccccag
gtaccccatcatggccctccccaggggcctcatcatggccctccccagggaccccatcat
ggcccacctcaaggacctcttcatggcccctcacaaggacccagttccagtccacaccct
ggccctccttctactggtcttttaggtgcaagacctggtttaataccactgcagaggcct
cctggagttccatcttcaaacatgcaacgctttccaatgtctcaaaggcctgccccccct
catatgatgaacagaggccctcctccagggcagggtggttttggtatgccacctcatggg
atgaggggccctttacgtccacaaggccactttcccagacagagaggaccagaaggtcat
ggaggacctgaagagcgggatggtagacaattcagaggtgaaaggcaaggctttcctcct
ggcagagaagcagaaaggtttggaaggcgttcatttggaagtcgaaatgaagatgacaga
gaacgatttggtaggcgctttgatgaccctgatcatgagcgaccacctaatcgtgggcgg
agcagctggggtagaggaagtcctagccgtgaaagacaaagagactctgaggaaagaaat
agatggtcaatgggacatgagagagagaggagtcaccctagaggaaggggagagttcctc
gaaaatagaaaatctgatgcagagcttgatgaagaccacaaacctttaagtagtagaatg
cgaaatgcagaaacagttactgaaaggaacgagagtaaagcagaacctgttgcgaaaacc
cccactgaagaacagcctcaaacggctaaatcatctgaagaagcagaaagggatgttgga
tcaaatccagcaaagccttaa
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