Xenopus laevis (African clawed frog): 108708017
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Entry
108708017 CDS
T01010
Symbol
ptchd1.L
Name
(RefSeq) patched domain-containing protein 1 isoform X1
KO
K24682
patched domain-containing protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xla04990
]
108708017 (ptchd1.L)
Domain-containing proteins not elsewhere classified [BR:
xla04990
]
Other domain-containing proteins
Patched domain-containing proteins
108708017 (ptchd1.L)
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Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
108708017
NCBI-ProteinID:
XP_018101755
Xenbase:
XB-GENE-17333157
UniProt:
A0A1L8HDT6
A0A974DNW3
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All DBs
Position
2L:45523623..45609186
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AA seq
915 aa
AA seq
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MVLARLWWSFRSSQPVTLPLLSCLCTRMLRKVLHRGLRNCFSRLGFFIASHPVFFISAPV
LISILLGASFSRYRVEENIEYLLAPKHSLAKIERNLVDSLFPVNRSKHRLYSDLQTPGRY
GRVIITSSRRANMLDQHHTDLILKLHSAVRKIQVHRPGFNYTFAHICMLSNDKTCIVDDI
VHILEELKAARSQNRTNYIITYPITMLKDGKEVYNGHQLGGVTVHSKDRVKSAEAIQLTY
YLQAINSLNEVVAEKWESIFCEMVESFQKLNREVKLYTFTSSTLGQDFQKTSRVSERYLI
TSLALVVSLAVICCSMQDCVRSKPWLGLLGLVTISLSTLTAAGIVNLTGGKYNSTFLGIP
FIMLGHGLYGTFEMLSSWRKTREDQHVKDRIAVVYADTMISFTLTTAMYLVTFGIGASPF
TNIEAARIFCRHSCIAIFFNYLYVLSFYGSSLVFTGYIENNYQHSIFCRRVPKPEILQVK
SLWYRFLMTAKFSDDTADAEETNSYESHLLVCFLKRYYCDWITNTYVKPFVVLFYLVYIS
FALMGYLQVHEGSDLRNIVATETRTINYTTVQQKYFSNYSPVIGFYIYESIDYWNTSVQE
DVLEYTKGFVRISWFESYLNYLRKLNMSTALPKKNFTDILRYSFLKTPRYAHFSEDIIIP
KKYNNEVEVVASRMFLVAKTMETNREELYDLLETLRKLSLTSKVKFIVFNPSFVYMDRYA
SSIGAPLQNSCISALFLLFFSAFLVASSIINVWITLTVASVEFGVIGFMTLWKVELDCIS
MLCLIYGINYTIDNCAPLISTFILGKDFSRTKWVKNSLEVHGVAILQSYLCYTVGLIPLA
AVPSNLTRTLFRCLFLIAFVTFFHCFAILPVILTFVPPSKKKRKEKKTPENREEIECVEM
VDLDSTRVVDQITTV
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggtcctggccaggctctggtggagcttccgatcttctcagcctgtgactctccccctc
ctaagctgcctctgcactaggatgttgcggaaggttctgcacagggggctgagaaattgc
ttttcaagacttggcttttttattgccagccatccagtattttttatctcggccccagta
ttgatctcgatcttgctgggggccagtttcagtaggtatagggtggaggagaacatcgaa
tatttgcttgcccctaaacacagcctggccaagatagagaggaacctagtggatagcctg
ttcccagtaaatcgatccaagcatcgtctgtattctgatctgcaaactcctggaaggtac
ggcagggtcatcatcacatcttctagaagagccaacatgttggaccaacatcacactgat
cttatcttaaagttgcattcagctgtgagaaagattcaagtgcacagaccgggctttaac
tatacatttgctcatatctgcatgttgagcaatgacaagacctgcatagtggatgatata
gtgcatatcctggaggaattaaaggcagctcgctcacaaaacagaacaaactatatcatc
acgtatcccatcacaatgttgaaggatggaaaagaggtgtataatggacaccagctgggc
ggtgtaacagttcacagcaaagatcgggtgaagtctgctgaggccattcagctcacatat
taccttcaggcaatcaactccctcaatgaagtggtggcagagaaatgggaatctattttc
tgtgaaatggtggaaagcttccaaaaattaaacagggaggtcaaattgtacactttcact
tcttcaactctaggacaggattttcaaaaaaccagcagggtttcagagcgctacctgatc
acaagccttgccttagttgtctcactggctgtaatctgttgctccatgcaagactgtgtc
cgaagcaaaccttggcttggtctccttggattggtaactatcagtctttcaacacttact
gctgctggaatcgtcaatttaacaggtggaaaatacaactctactttcctggggattcca
tttatcatgctaggtcatggattatatggaacatttgaaatgctgtcatcttggaggaaa
actagagaggatcagcatgtgaaagacaggattgctgttgtgtatgcagacaccatgatc
tcctttacactcacaactgccatgtacttagtcacttttgggattggtgccagtcccttc
acaaacatcgaagctgcaaggattttctgccgccactcatgtatagcgatctttttcaac
tacctctatgtgttgtcattctatggctctagccttgtgtttactgggtacattgagaac
aattaccagcatagtatattctgtagaagggtgccaaagcctgaaatattacaggtgaag
tcattgtggtacagatttcttatgacagcaaaatttagtgacgatacagcagatgccgaa
gaaacaaattcttatgaaagtcatcttttagtttgtttcctcaagcgatattactgtgac
tggataacaaatacatatgtgaagccttttgtagtcctcttttatctggtttatatttcc
tttgccttaatgggctatttgcaggtccatgaagggtctgatctaagaaacattgtagca
actgagacacgaacaattaactatacaaccgtccaacaaaagtatttcagcaactatagc
ccggtgataggcttttatatttatgaatctatagattactggaatacaagtgtccaggaa
gatgtgctggaatacacaaaaggctttgtcagaatatcttggttcgagagctacttaaac
tatctcagaaaattaaacatgtccactgcattgcctaagaagaattttacagatatacta
cgatattcatttttgaaaactccccgatatgcacatttttccgaggacataatcataccc
aaaaaatataacaacgaagttgaagtggtggcctccagaatgtttttggttgccaaaacc
atggaaacaaacagggaagaactctacgaccttctagagacattgagaaaattgtctttg
acctccaaagtaaaatttatagtctttaatccgtcctttgtctatatggacagatacgcc
tcatcgatcggagcacctttacagaactcttgcataagtgctttgtttctgttgtttttc
tctgcatttcttgttgcaagttctattattaatgtctggatcactttaactgttgcctct
gtagaatttggagtaatcgggttcatgacattgtggaaagttgaattggactgcatatcc
atgctttgcctaatctatgggattaattacacgatagacaactgtgcacctcttatatca
acttttatccttggaaaagatttttcaaggactaaatgggtaaaaaattctctggaagtg
cacggggtagctattttacagagctacctctgttatactgttggtttgatccctcttgca
gctgtgccttcaaatctgacccgtacactgtttaggtgcttgtttttaatagcttttgtc
acattctttcactgctttgctattttgccagttatactgacatttgttccaccatcaaag
aagaaaaggaaagagaagaaaaccccagaaaaccgagaggaaatagagtgtgttgaaatg
gtggacttggatagcacgagagtagttgaccaaattacaaccgtctga
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