Xenopus laevis (African clawed frog): 108708414
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Entry
108708414 CDS
T01010
Symbol
tgfbrap1.L
Name
(RefSeq) transforming growth factor-beta receptor-associated protein 1
KO
K20177
vacuolar protein sorting-associated protein 3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108708414 (tgfbrap1.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108708414 (tgfbrap1.L)
Membrane trafficking [BR:
xla04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
108708414 (tgfbrap1.L)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
zf-Vps39_C
CNH
Clathrin
Motif
Other DBs
NCBI-GeneID:
108708414
NCBI-ProteinID:
XP_018102575
Xenbase:
XB-GENE-6486558
UniProt:
A0A974DNP5
A0A1L8HGR2
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Position
2L:complement(116151645..116167642)
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AA seq
857 aa
AA seq
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MSVQAFRLVCASEREQLPLGIHIECLECSGHDLYLGTNDCVIYHLLLVEQPLSEPTGLSI
AQQTDQPYTSFTTTPQRQRQLGLKKPICELRAASALSRLLVLCDNTISILCSESLEPLPG
PKIRGVLTFTLNENPVSGDAFCVELCLISSKKRTVQIFSVGQERVQLIREVATPEQACAV
AADGHYLCLALSSRYITLNYNTGHCQDLFPYPSDQKRPIVKWISRQEFLLAGPSGLGMFA
TVAGISQRAPVRWSDNVIGAAISFPYVLALDEEFITVHSMLDQQKKQTLPFKEGIILQDF
EGRVIVASSNGIYVLIPLPLEKQIQDLLSSQRVDEALMLAKGARRNIPKEKFQVMYRRIL
QQAGFIQFAKLQFLEAKELFRSSQLDIRELISLYPLMLPSSSAFIRSHPPLHEYADLNQL
TRGDQGKVTKCKRFLMSYLSEIRSTEVANGYQEDVDTALLKLYTEADHESLLDLLVSENS
CELSDSAYWLEKHKKYFALGLLYHYNKQDAAALQIWVKIINGDLEDSTRPDLFEYVVDFL
TFSRDQHLVWQYADWVLQKSEQVGVRIFTKRSPEEYTQNGFCPDKIVSYLCKYHKALLLF
LEHLVLEKMLQKEKYHTHLAVLYVEEVQRLKAMDSPDVEEIEMQRGRLQKLLRQSDLYRV
LFLIDKIKGTDLDMERAIMHGKLEEHGQALDILVHHLKDFAAAENYCVWNSEGRNAPYRQ
RLFQLLLSSYLTLASHDNSFLVAAVDLLNNHPAEFDAANVLRLLPENWSVQLLSPFLAGA
MREHVHALRMSQIAIGLAKAENVIYKQEKLNLREKPIVLTDKKYCSVCRNPFQEPVFVRY
PNGQIVHTHCNKIPCEE
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgcaggcgtttcggctggtgtgtgcatcagaaagggagcagcttcccttagga
attcacatagagtgtttggaatgctctggccatgatctgtaccttggcaccaatgattgt
gttatttaccatcttctgctagtggaacagccactctctgagcccacaggactatctata
gctcagcaaacggatcagccctacaccagctttaccactactccacaaaggcagagacaa
ctgggacttaagaagcccatttgtgaactaagagctgcctcagccttgagcaggctgctg
gtactgtgtgataatactatcagtatactgtgcagtgagtcacttgaaccccttccagga
cccaagattcggggagttctcacttttaccctcaacgagaaccctgtgagtggggatgct
ttttgtgtggagctctgcttaatctcctccaagaaacgcacagttcagatcttcagtgtg
ggacaggagcgagtacaattgatacgggaggttgccactccagaacaagcctgtgcggta
gcagctgatgggcactatctatgcttggccctcagcagccgttacataactcttaattat
aacacaggacattgccaggaccttttcccttatccaagtgatcagaaaagaccaattgta
aagtggatcagcaggcaagagtttcttttggctggacctagcggattaggcatgtttgca
acagtagctggaatctctcaacgtgcccctgtccgctggtcggataatgtcattggtgct
gctatttcttttccatacgttctggctttggatgaagaatttattactgtgcacagtatg
ctggaccagcagaaaaagcaaaccctgccatttaaagaaggaattatcctgcaggacttt
gaaggaagggtcattgtggcatcctctaatgggatatatgttttaattcccctgcctttg
gaaaaacaaatccaggacctgctttcaagccagcgagtagatgaagctttaatgttggcc
aagggtgcccggagaaacattccaaaagagaaatttcaggttatgtacagaaggatcctg
cagcaggctggctttatacagtttgctaagcttcagtttctcgaagcaaaagagttattc
cgaagcagccagcttgacatacgggaactgatctctctttatcctctcatgctgccgtcg
tcctccgcatttatccgctcgcatccccctttgcatgagtatgctgatctcaaccagctg
actcgaggagatcagggaaaagtgaccaaatgcaagcgttttttaatgagttatctgagt
gaaattcgcagcactgaagttgcaaatggttaccaggaagacgtggacacggctttgctg
aaactatatacagaggcagatcatgaaagtttgttggatttactggtctcagaaaattcg
tgtgaactgtctgatagtgcatactggctagagaagcacaaaaaatactttgcacttggt
cttttatatcactacaataagcaggatgcagcagcactacagatatgggtaaaaattatt
aatggggacctggaagacagcacccggccagatctttttgagtacgtagtagacttccta
accttctccagagaccagcatcttgtgtggcagtatgcagactgggttttgcagaaaagt
gagcaggttggtgtccggatttttaccaaaagatctcctgaagaatacacgcagaatggc
ttctgtccagataaaattgtgagctatctttgcaagtaccataaggctttgctcttgttc
ctagaacatttagtcctggagaagatgttacagaaggagaagtaccacactcatttagct
gtgctctatgtagaagaggtccagcgccttaaggcaatggactccccagatgtagaagaa
attgaaatgcagcggggaagacttcagaagcttctgcggcagtcagacctctatagagtc
ctctttcttatagataaaatcaaagggacagatctagacatggagcgagctataatgcat
ggaaagctggaggaacatggtcaggcattggatattctagttcatcatctgaaagacttt
gctgctgctgagaactactgtgtatggaactctgaagggaggaatgctccataccgtcaa
cgcctattccagcttcttctgtcctcctacctcactcttgcctctcatgacaattctttt
cttgtggctgccgtggatttattaaataaccaccctgcagaatttgatgcagctaatgtt
ctgcgcctgttgccagaaaactggtcagtgcagcttctctcccctttcttagctggagcc
atgagggaacatgtccatgcacttagaatgtcacagatagcaataggcttggcaaaagct
gaaaatgtgatttacaagcaagagaagttgaacctaagggaaaaacctattgttctcacg
gataagaaatactgcagtgtgtgccggaatcctttccaggagcctgtttttgttagatac
cccaacggccaaatcgtccatacacactgcaacaaaatcccatgtgaagagtag
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