Xenopus laevis (African clawed frog): 108708540
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Entry
108708540 CDS
T01010
Symbol
prpf40b.L
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108708540 (prpf40b.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108708540 (prpf40b.L)
Spliceosome [BR:
xla03041
]
Complex A
U1 snRNP components
U1 related factors
108708540 (prpf40b.L)
Complex B
108708540 (prpf40b.L)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
DTW
Motif
Other DBs
NCBI-GeneID:
108708540
NCBI-ProteinID:
XP_018102838
Xenbase:
XB-GENE-17335737
UniProt:
A0A1L8HHP0
A0A974DPD4
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All DBs
Position
2L:141961502..141997338
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AA seq
924 aa
AA seq
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METRAAMEHDTFWIASAPDSGTAPPGQPAPFPTAPPLMPPPFMPPPGLPPPFPPIGLPPI
GQRPPAIPPMPHAMLPPMIPPLAGPPPIGQLPSMVPPLMPTMMLPAVTSSSTTVPAPGTE
SVNSPLAQSAPTVAKVTAEESSLALDIPKKKSLWTEHKAPDGRTYYYNSDTKQSTWEKPD
ELKSKAEFLLSQCPWKEYKSDTGKSYYYNSQTKESRWTKPKDLDELEALIKQKEETGAEQ
ETQSAISSPSTAVSSDTEMTPTEEPIVSQPSIPEPVEASEVETPQEEAVPYQKNNLNSDP
LRIEDGVKVEPEKRSYSWNTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALP
KLSEKKQAFNAYKAQREKEEKEETRLRAKEAKEKLQRFLEQHEKMTSTTRYRKAEQMFGE
QEVWSVVPERDRKEIYDDVLFFLAKKEKEQAKQLRKRNVQALKNILDNMTNVSFQTTWSE
AQQYLMDNPMFAEDEELQNMDKEDALICFEEHVRALEKDEAEEKERTRLRERRQQRKNRE
SFQVFLDELHETGQLHSMSTWMELYPSISTDSRFANMLGQTGSTPLDLFKFYVEELKARF
HDEKKIIKDIIKDRNFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARE
RERGKEEARKIRRKEAAFKSMLKQSVPPLEMDSVWDEVRERFVGDPAFDQITVESERIRL
FKEFVHAIENECQHHHARNKKHSKKSKKHHRKRSHSQSPTSMDRTKKKGQENVQGWDNPA
AEKGSESEEENHHHRTQKRRKRNHSESGSEISSSADSEHSSKKSKRPKKKNKKKRHKSNS
PESEPERDKEKIRKEKEQESEAIKERTKERECDQEAEPADSRHKSPKHSTRKEKTGWDTS
ESELSEGELEKKRRSLLQQLGDDQ
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtgcagctatggagcatgacacattctggatagcgtcagcaccagactca
ggaacagctccacccggacagcctgctccttttcccacggctccgcccctgatgcctcca
ccttttatgccacctccagggcttccaccacccttcccaccaattggtttgccaccaatt
gggcagaggcctccagctattccaccaatgccacacgccatgctgccacccatgattccc
cctctggcaggacctcctccaattggacagcttccaagtatggtgcctcccctaatgcca
acaatgatgctgccagcagtaacatctagttctactactgtgcctgctccaggaacagag
tctgtgaactcacccttggctcagtcagctcccacggtggcgaaggtaactgcggaggaa
agttcattagctctggacattccaaaaaagaaatcattatggactgaacacaaggcacct
gatgggcgcacctactactacaactccgataccaaacagtctacatgggagaagccagat
gagctgaaatccaaagcggagtttctcctctcacagtgtccctggaaagaatataaatct
gacacaggcaaatcctattattataactctcagaccaaggagtctcgctggaccaagccc
aaagacctggatgaattagaggcactaataaagcaaaaggaggaaactggtgctgaacag
gagacccaatctgctatctccagcccctcaactgcagtttcatctgatacagagatgaca
cccactgaggaacccattgtatcacaacccagtataccagagccagtagaggcatcagaa
gtagaaactccacaggaagaagctgtgccgtaccagaaaaataacttgaacagtgatcca
ctcagaattgaggatggggttaaggtagaaccagagaagaggtcttatagctggaataca
aaggaggaagcaaagcagttcttcaaggaactcctgaaggataagggtgttccttccaat
gcaacatgggagcaagcaatgaaaatgattataaatgatccacgatacagtgctcttcca
aaactgagtgaaaagaagcaggcgttcaatgcttataaagcccagcgagagaaagaggaa
aaggaggaaaccaggcttcgcgcgaaagaagctaaagaaaaactgcagcgcttcttggag
cagcatgagaagatgacttcaaccacacgctacaggaaagctgagcaaatgtttggagag
caggaagtttggtcagttgtccctgagagagatcgtaaggagatctatgatgatgtgctc
ttcttcttggcaaagaaagaaaaggaacaagcaaagcagctaaggaaacgcaatgttcaa
gctctcaagaatattctagacaatatgaccaatgttagctttcagaccacgtggtcagag
gcccagcagtacctcatggacaatccaatgtttgctgaggatgaagagctgcagaatatg
gataaagaagatgcacttatatgctttgaggaacacgtccgtgcactggagaaagacgag
gcagaggagaaggagagaaccaggctcagagagcgacgacagcaacgcaaaaacagagaa
tcttttcaggtatttctcgatgagctccatgagactggccagttgcactcaatgtctacc
tggatggagttgtacccgtctatcagtacagattcacgcttcgccaacatgctgggacag
acaggttcaacacctctagacctgtttaaattctatgtggaagaactgaaggcacgtttt
catgatgaaaaaaaaatcattaaagatataataaaggatcgcaacttcagtgtggaggtg
aacaccacttttgaggactttgcacacatcattagttttgacaagcgggcagcaacactg
gatgctggaaacataaaactgacatttaatagtctgttagagaaagctgaagctcgggaa
cgtgagcgcggaaaggaggaggcccgcaaaattcggaggaaagaagctgcatttaaaagt
atgctgaagcagtctgttccacctctggaaatggacagcgtctgggatgaagtgagggaa
cgctttgttggtgatcctgcctttgaccaaattactgtggaatcagaaagaatccgcctg
tttaaagagtttgttcatgcaattgagaatgaatgccagcatcaccatgccagaaacaag
aagcactccaagaaatccaagaagcaccatcgtaagcgctcacattcccagtccccgact
tctatggacagaacaaagaagaaaggtcaagagaacgtccaagggtgggacaatcctgca
gcagagaaggggtcagaatcagaagaggaaaatcaccatcatcggacacagaaaaggagg
aagcgtaaccattcagagtcaggctcggaaatctcctcttctgcagattcagaacacagc
tccaagaagtctaagagaccgaaaaagaaaaataagaaaaagcgccacaaatcgaacagt
ccagagagtgaacctgagagagataaagagaagattaggaaggaaaaggaacaggagagt
gaagcaataaaagagagaacaaaggagcgagaatgtgaccaagaagctgagcccgcagac
agccgacacaaatccccaaagcacagcacacgcaaggagaaaacaggctgggacacatca
gagagcgagctcagtgaaggagagttggagaagaagcggagaagcttgctacagcaactg
ggcgatgatcagtag
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