Xenopus laevis (African clawed frog): 108708701
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Entry
108708701 CDS
T01010
Symbol
pan3.L
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit pan3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108708701 (pan3.L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
xla03019
]
108708701 (pan3.L)
Messenger RNA biogenesis [BR:
xla03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108708701 (pan3.L)
mRNA degradation factors
3'-5' decay
Pan complex
108708701 (pan3.L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH_4
zf-CCCH
zf_CCCH_4
Pkinase
Torus
Motif
Other DBs
NCBI-GeneID:
108708701
NCBI-ProteinID:
XP_018103193
Xenbase:
XB-GENE-17340003
UniProt:
A0A974DQH0
A0A1L8HJ05
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Position
2L:complement(164420694..164479632)
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AA seq
788 aa
AA seq
DB search
MNSGLTQSPSPAVAAAAGPAGIPGAKLKFCRYFAKDRTCFYGDECQFLHDEQLGGIHGNG
NSPLSLPAGGPVAVYPQPVTPVGNKKMDLAGLEAQRLAIPGLDGGAIPDTSLTDSYFSTS
FIGLNGFGSPGEANYPRMQQRMTNSSSSPSLLNDGAKPYATHDPLGSPASAMFNDFGGLT
MSHRRKTPNPTASEFIPKGGSTSRLSNMSQSSMSAFSQALFSHPSMGGPTGAGLAPGMSL
SAGSSPLHSPKITPHTSPSPRRRSHTPNPANYMVPTSASTPVTNSVSQPPAAGEIIQKAT
VGGTTYFYTDTTPAPLTGMVFPNYHIYPPTAPHIAYMQPKANAPSFFMADELRQELINRH
LITMAQIDQADMPGVPAEVDSYHSLFPLEPLPSPNRIKTSNFGYITSCYKAVNSKDDLPY
CLRRIHGFRLVNTKCMSLVDTWKKIQHSNIVTLREMFTTKAFGEHSLVFAYDFHSGSETM
MSRHFNDPSADAYFTKRKWGQHDGPLPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLAC
RVMDPTKILITGKTRLRVNCVGIFDVLNYDGSQNNPVALMPQYQQADLISLGKVVLALAC
NSLAGIQRENLQKAMELVTINYSSDLKNLILYLLTEQNRMRSVNDIMPMIGARFYTQLDA
AQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPSWSETGDRYLLKLFRDHLF
HQMTEAGTPWIDLSHIVSCLNKLDAGVPEKISLISRDEKSALVVTYSDLKRCFENTFQEL
VAAANGQL
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcggactcacccagtccccatccccggcagtggcggcagcagcaggtcccgcg
gggattcccggggccaaactcaagttctgccgctacttcgccaaggacaggacgtgcttc
tacggggacgagtgtcagttcctacacgatgaacaactcggggggatccacggtaacggc
aactccccgctaagccttcccgccgggggcccagtcgctgtctacccgcagcccgtcacc
cctgtggggaataagaagatggatctggcgggactggaagctcagcgcttggccattcct
ggtttagatggcggtgctattccagacaccagtctaacagattcctacttcagcaccagc
tttattggtcttaatggattcggaagtcctggtgaagctaactacccaagaatgcagcag
agaatgactaacagcagcagctcccccagcctcctcaatgacggtgctaagccatatgca
acacatgaccctttaggttcgccagcctcggcaatgtttaacgattttggtggtctcact
atgtctcaccggcgaaagactcctaatccaactgcaagtgagttcattccaaagggtggt
tcaacttcaaggttaagtaacatgtcccagtccagcatgtctgccttttcccaagcgctg
ttctcacatccatccatgggaggtcctactggagctggccttgctccaggcatgtcactg
tccgctggatcttctccactacattcccctaaaatcacaccccacacctctccttctcct
cgaaggaggagccatacgccgaaccctgcaaactacatggtgcctaccagtgcctcgacc
cctgtcacaaattctgtctcccagccaccagcagcaggagagatcattcagaaagcaact
gtgggtgggacaacctatttctacacagatactactccagctccactcacaggaatggtt
tttccaaactatcatatttaccctccaactgcaccacatattgcttacatgcaaccaaaa
gcaaatgcaccttccttctttatggcagatgagctgaggcaggaattaataaataggcat
ttaataacaatggctcaaatcgatcaagctgatatgccaggagtacctgcagaagttgac
agctaccatagcctctttccactggaaccactgccttctcccaatcggattaaaacaagc
aactttggatatatcacgtcatgctacaaggctgtaaacagcaaagatgatttgccgtac
tgtctgcgcaggattcatgggtttcgccttgtaaacaccaagtgcatgtctttggttgat
acctggaaaaaaattcagcactcgaatattgtcaccttgcgagaaatgtttaccaccaaa
gcttttggagaacattcccttgtgtttgcatatgattttcattctggaagtgaaacgatg
atgagcaggcattttaacgacccaagtgcagatgcatatttcacaaaacgaaaatggggg
cagcacgatggtccattacctcgacaacatgccggtctgcttcctgaatccctcatttgg
gcttatattgtccagctgagttccgccttgagaacaatccatacagctggcttggcgtgc
cgcgttatggatccaacaaaaattcttattaccggcaaaacaaggctgcgtgtcaactgt
gttggaatatttgacgtcttgaattatgatggaagtcagaataatcctgtggctttaatg
cctcaataccagcaagcggacctgatctcattagggaaggtcgtattggctttggcttgc
aactctctggcaggaatccagcgagagaatctgcagaaagcgatggaacttgtcaccatc
aactactcctctgacttaaagaatcttattctgtacttgctgaccgaacagaacaggatg
cgcagcgtcaatgacatcatgccaatgatcggtgctagattttatacacagttggatgct
gctcagatgcgcaatgatgtcatagaagaggaccttgcaaaggaagtacagaatggaagg
ttgttcagacttctggcaaaactgggaacaattaatgaaagaccagagtttcagaaagac
ccatcctggtcagaaacaggggacagatacttactcaagctctttagggatcatcttttc
catcagatgacagaagccggaactccatggatcgacctcagtcatattgtgtcttgtctt
aacaagttagatgctggcgtaccagaaaaaatcagcctcatttccagggacgagaagagt
gcccttgtggtgacttacagtgatctcaaacgctgctttgaaaatacgtttcaggaactg
gttgcggccgcgaacgggcagttgtag
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