Xenopus laevis (African clawed frog): 108708846
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Entry
108708846 CDS
T01010
Symbol
rpa1.S
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03030
DNA replication
xla03420
Nucleotide excision repair
xla03430
Mismatch repair
xla03440
Homologous recombination
xla03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108708846 (rpa1.S)
03420 Nucleotide excision repair
108708846 (rpa1.S)
03430 Mismatch repair
108708846 (rpa1.S)
03440 Homologous recombination
108708846 (rpa1.S)
03460 Fanconi anemia pathway
108708846 (rpa1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
xla03000
]
108708846 (rpa1.S)
03032 DNA replication proteins [BR:
xla03032
]
108708846 (rpa1.S)
03400 DNA repair and recombination proteins [BR:
xla03400
]
108708846 (rpa1.S)
Transcription factors [BR:
xla03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108708846 (rpa1.S)
DNA replication proteins [BR:
xla03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108708846 (rpa1.S)
DNA repair and recombination proteins [BR:
xla03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108708846 (rpa1.S)
MMR (mismatch excision repair)
108708846 (rpa1.S)
DSBR (double strand breaks repair)
HR (homologous recombination)
108708846 (rpa1.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
IBR
Motif
Other DBs
NCBI-GeneID:
108708846
NCBI-ProteinID:
XP_041439246
Xenbase:
XB-GENE-17344439
UniProt:
A0A8J1MD24
LinkDB
All DBs
Position
2S:3012146..3045945
Genome browser
AA seq
611 aa
AA seq
DB search
MALPHLSEGAISAMLGGDSSCKPTLQVINIRSINTGNGPPRYRLLMSDGLNTLSSFMLAT
QLNSLVDHNLLATNCICQVTRFIVNNLKDGRRVIIVMEMEILKSADLVKEKIGTPQPYNE
GQGPPQPAAPASAPAPAPPPSKPQNNSAPPPSMNRGTSRLFGGGGMLNTPGGSQTKVVPI
ASLNPYQSKWTVRARVTNKGQIRTWSNSRGDGKLFSIEMVDESGEIRATAFNDQADKFFS
LIEVNKVYYFSKGTLKIANKQYTSVKNDYEMTFNSETSVIPCDDSADVPTVQFEFVPIGE
LESKNKDTVLDIIGICKNVEEVTKVTIRSNNREVSKRNIHLMDSSGKLVSTTLWGEDADK
FDGSRQPVVAIKGARLSDFGGRSLSVLSSSTLMINPDIPEAFKLRAWFDSEGQVVEGTSI
SESRGGGTGGGNTNWKSLLEVKNENLGHGEKADYFTSIATIVYLRKENCLYQACPSEDCN
KKVIDQQNGLFRCEKCNKEFPNFKYRLILSANIADFGENQWITCFQESAESILGQNATYL
GELKEKNEQAFDEVFQNANFRSYTFRIRVKMETYNDESRIKATAMDVKPVDHKEYSRRLI
MNIRKMATQGV
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atggctcttccacacctcagcgagggcgccatctcggctatgttgggtggcgattcttct
tgcaagccaactctgcaagtgattaatatccgctcaatcaacactggaaatggccctcca
cgttatcgcctcctaatgagtgatggcctcaataccctttcttcttttatgttggcaacc
cagctgaactcccttgtggatcacaatcttcttgccacaaactgtatttgtcaggtgaca
cggtttattgtaaataatctgaaagatggaaggagagttatcattgtgatggagatggag
attctgaaatctgctgatttggttaaggaaaagattggcactccgcagccctacaacgag
gggcaagggccaccacagcctgcagcacccgcatctgctcctgctccagcccccccacct
agcaaaccccagaacaattcagctcctcctccttcaatgaacagaggaacatctagattg
tttggaggaggaggtatgttgaacacacctgggggatctcagacaaaggtagtgcccatt
gcaagtctcaatccttaccagtccaagtggactgttcgtgctagagtcaccaataaaggt
cagatccgcacatggagcaactcccgaggggatgggaagctgttttcaattgagatggtg
gatgagagcggtgagatccgagctacagctttcaatgatcaagctgacaagttcttttcc
cttattgaagtcaacaaggtgtattacttctccaaaggcacattaaagatcgccaacaag
cagtacacctctgtgaagaacgactacgagatgactttcaacagtgagacgtccgttatt
ccctgcgacgactctgctgatgtccctacggtgcagtttgaatttgtacctattggcgaa
ttagaaagcaagaacaaagatacagtattggatatcataggaatttgcaagaacgtcgaa
gaggtaactaaggtcacaataagatccaacaacagagaagtttctaagcgcaacattcat
ctaatggattcatctggtaaattggtctcgacaactctgtggggcgaagatgcagataaa
tttgatggttcccgacagcctgttgttgcaatcaaaggagcgaggctttccgatttcgga
gggagatctctttcagtcttgtcgtctagcactttaatgatcaatcctgatattcctgaa
gcattcaaactccgtgcatggtttgactccgaggggcaagtggtagaaggaacatctatc
tctgaatctcgcggtggtggaacgggaggtggaaacacaaactggaagtctttgttagaa
gtgaaaaatgaaaaccttggccatggcgaaaaggcagattatttcaccagcattgctaca
attgtgtatcttcggaaagaaaactgtctttatcaggcctgcccttcagaagactgcaac
aaaaaggtgatagatcaacagaatgggcttttccgctgtgaaaaatgtaacaaagaattc
ccaaacttcaagtatcgtctcatcctttcagctaacattgcagactttggggagaatcag
tggataacctgtttccaagaatcggcagagagtattctgggtcagaatgctacttatctt
ggagaacttaaggaaaagaacgaacaagcctttgacgaggtgtttcagaatgccaacttc
cgttcttacacctttaggatccgagtcaagatggagacctacaatgatgaatctcgtata
aaggccacggccatggatgtgaagcctgttgaccacaaagaatactctcggaggcttatt
atgaacattaggaaaatggcgactcaaggtgtctga
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