Xenopus laevis (African clawed frog): 108708848
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Entry
108708848 CDS
T01010
Symbol
supt6h.S
Name
(RefSeq) transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108708848 (supt6h.S)
03036 Chromosome and associated proteins [BR:
xla03036
]
108708848 (supt6h.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108708848 (supt6h.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108708848 (supt6h.S)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
Spt6_S1
HHH_3
S1
HHH_9
S1_RRP5
SH2
Tex_YqgF
CoV_nucleocap
Tex_N
oligo_HPY
Motif
Other DBs
NCBI-GeneID:
108708848
NCBI-ProteinID:
XP_041439251
Xenbase:
XB-GENE-17336786
UniProt:
A0A8J1MD29
LinkDB
All DBs
Position
2S:3998495..4046429
Genome browser
AA seq
1819 aa
AA seq
DB search
MRNVRAAPKASPCWAIAAAGSDVTPACSAFYPPASALDLLLHFWTKLFGKEYGFRRRQLG
SALAFTSERDSPRQSRERLCSLIAMDFVESEAEESEGEYEDGNTAERSNKKFVEDDDEEE
EEENPEDQDELGNLKGFINDDDDDEDEEEEDEGGSGGSDEDVGHKKRKHSFDDRLEDDDF
DLIEENLGVKVKRQKFRRVRKMSDDEDEEEEDFGKEEHEKEAIAEEIFQDGEDESRPDHV
DQPVAGPEEEEEEEDEESDIDDFIVDDDGQPLKKPKWRKKLPGYTDAALQEAQEIFGVDF
DYDEFEKYDEDDEEMEEYDYEDDEGDAETRVRPKKTAKKRVSRRSIFEMYEPSELESSHL
TDQDNEIRTTDMPERFQLRTISVKSAEDDELEEEAEWIYRNAFATPTISLQETNDYLERG
QVGSNFNRKGPSTIQKIREALNFMRNQHFEVPFIAFYRKEYVEPELNINDLWRVWQWDEK
WTQLKLRKLNLIRLFEKMQAYQYEQISADPDKPLADGIRALDTADMERLKDVKSMDELKD
VYNHFLLYYGRDIPKMQNAAKSSRKKKKRIPEEGEEGADAAEQEEPPKGPELKQASRRDM
YSICQIAGLDGLAKKFGLTPEQFGENLRDSYQRHETEQFPAEPLELAKDYTCSQFTTAEA
VLEGARYMVALQIAREPLVRQVLRQTFQERAKVNVIPTKKGKKEIDEAHYAYAFKYLKNK
PVKELRDDLFLKMFIAEDEQLLTIEICIDMKDGEGYGSDQTYFEEIKQFYYRDEFSHQVQ
EWNRQRTLAIERALKQFLYPQMAKELKNKLILEAKDFVIKFCSRKLYNWLKVAPYRPDTQ
VEEDDDFMEENQGKGIRVLGMAYSSSRDHPVFCSLLNGEGEVTDFLRLPYFTKRKNAWRE
DERERKARDIETLKKFLISKKPHVVAIASENRDAQMMVEDVKRIVQELEQGQQMSSIGVE
MVDNELAVLYMNSKKSETDYRDYPPVLRQAVSIARRIQDPLVEFSQVCNSDDDILCLKLH
PLQEHVVKEELLNALYCEFINRVNEVGVDVNRAIAHPYTQALIQYVCGLGPRKGAHLLKI
LKQNNTRLENRTQLVTMCHMGPKVFINCAGFIKIDTNSLGDSTDSYIEVLDGSRVHPETY
EWARKMAVDALEYDESAEDANPAGALEEILENPERLKDLDLDAFAEELERQGYGDKHITL
YDIRAELSCRYKDLRTTYRAPNPEEVFNVLTRETPETFYIGKLITCNVTGIAHRRPQGES
YDQAIRNDETGLWQCPFCQQDNFPELSEVWNHFDSGSCPGQAIGVKSRLDNGVTGFIPTK
FISDKAVKRPEERVKVGMTVHCRIMKINIEKFSVDLTCRSSDLMDKNNEWKLPKDTYYDF
DSESADHKQEEEQKKKQQRTTYIKRVIAHPSFHNINFKQAEKMMETMDQGDVIIRPSSKG
ENHLTVTWKVSEGIYQHVDVREEGKENAFSLGSTLWINNEEFEDLDEIIARFVQPMASFA
RDLVNHKYFQDCNNGDKKKLEELLLKTKKEKPTFIPYFISACKELPGKFLLGYQPRAKPR
VEYVTVTPEGFRYRGQIFSSVNGLFRWFKDHFHDPVPGITPSSSSSRTRTPASVNATPAN
INLADLTRAVNALPQNMTSQMFNAIAAVTGQHGQNPNATPAQWASSQYGYSGGSGGGSSA
YHVFATPAQQPVATPLMTPSYSYATPSQPITTPPFHQLPASGTPTPAPTPQSSHSQSSSH
SQSSSHSQSSSRHRQQSKSNNHTAVDWGKMAEQWLQEKEAERRKQKHRVTPRPSPSPMIE
STPMSVAGDATPLLDEMDR
NT seq
5460 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaatgtaagagcagcgcctaaagcgtctccatgctgggctattgcggctgccgga
agtgacgtcacgcctgcctgttctgcgttctatccgccagcttcggcgttagacttgctc
ctccatttttggacaaagttgttcggaaaggagtacggttttaggaggagacagctcggc
agcgctttagccttcacttcggagagggatagtccgcggcagagcagggaaaggctttgc
tcactgattgccatggattttgttgagagtgaagcagaggaatcggagggagaatatgaa
gatggaaatacggcagaaagatctaataagaaatttgtggaagatgatgatgaagaggag
gaagaagaaaatcctgaggatcaggatgagctgggaaacctaaaaggatttattaatgat
gacgatgatgacgaagacgaggaagaagaagatgaagggggaagtggtggctcagatgag
gatgttggccacaaaaagagaaagcactcatttgatgatcgcctagaagatgatgatttt
gaccttattgaagagaacttgggtgtcaaagtcaaacgtcaaaagttcagaagagttcga
aagatgtctgatgatgaagatgaagaagaggaagactttggaaaagaagagcatgagaaa
gaggcaatagctgaggaaatcttccaggatggagaagatgagagtagacccgatcacgtg
gatcagcctgtcgcaggtccagaggaagaagaagaggaagaggatgaggaatcagacatt
gatgatttcattgttgatgacgatggacagccattgaagaagccaaaatggaggaagaag
ttgccaggatatactgatgctgctttgcaggaagctcaggagatctttggtgttgatttt
gattatgatgaatttgagaaatatgatgaggatgatgaagaaatggaagaatatgactat
gaggatgacgagggagatgcagaaacacgggttcggcctaagaaaactgccaaaaagcgt
gtgagcaggcgcagcatttttgaaatgtatgaaccaagcgaactggaaagcagccacctg
acggaccaggacaatgagatccgaaccacagatatgccggaaaggttccagcttcggacg
atatctgttaagtctgctgaagacgatgaactggaggaggaagcagagtggatttacagg
aatgcttttgcaacaccaacaatatctttacaggagacaaacgactacctagagcgtgga
caagttggcagcaacttcaacaggaaaggaccaagtacgatacaaaagatcagggaagct
ctaaacttcatgaggaatcagcattttgaggtcccctttattgctttctaccgaaaggaa
tatgtagagccggagttaaacatcaatgatttgtggagagtctggcagtgggatgaaaag
tggactcagctgaaacttcgaaagctgaatctgattagactttttgagaaaatgcaagct
taccaatatgaacagatctctgcagatcctgacaaaccattagctgatggaataagagcc
ctggatacagccgacatggagagactgaaagatgtgaaatcaatggatgaactgaaggat
gtgtacaaccacttcttgctgtattatggccgagatataccgaaaatgcagaatgcagcc
aaatccagccgtaagaagaagaaacggatcccggaagaaggagaggaaggtgctgatgca
gcagaacaagaagagccacccaagggtccagaactaaaacaagcttctcgtagagatatg
tattcaatctgccaaattgctggtcttgatggtttagccaaaaaatttggcctaacacca
gaacagtttggtgagaatctgagagatagttaccagcgccacgagactgaacagtttcct
gctgaaccgctagaacttgccaaggattacacttgcagccaatttacaacagcggaggct
gtcctggaaggtgctcgctacatggtcgctctgcagattgctagagagcctctagtcagg
caggttctgcggcagacctttcaggaacgggccaaagttaacgtcattccaacaaaaaag
ggcaaaaaagaaatcgacgaagcccattacgcctatgccttcaagtatctgaagaacaaa
cctgttaaggagctgcgagatgacctgtttctgaagatgtttatagctgaggatgaacaa
ctccttactattgagatatgcatcgacatgaaagatggagagggctatggctcggaccag
acctattttgaggagatcaagcagttctattacagggatgagttcagtcatcaggtgcag
gagtggaacagacagcggacattagccattgagcgggcgctaaagcagtttctatatcca
caaatggcaaaggagttgaaaaataaacttatactggaggccaaggattttgtcatcaag
ttctgtagtcgtaaactgtacaactggctaaaagtggcaccgtatcggccagacacccag
gtggaggaagatgatgatttcatggaggaaaaccaggggaaaggaatccgagtattgggc
atggcatattcctcttctagagatcaccctgtgttctgttctttgcttaatggagagggg
gaggtcaccgacttcctgcgcctcccatacttcaccaagagaaagaacgcctggagggag
gatgagcgggaacgaaaagctcgtgatatcgaaacacttaagaagtttttaataagcaag
aagcctcatgttgtggccattgctagtgaaaatagggatgcccagatgatggttgaagat
gtcaagcgcattgtgcaggaactggagcaggggcagcaaatgtcctccattggagtggag
atggtggataatgaactggctgttttgtatatgaacagcaaaaaatctgagacagattac
cgagactatcctccagttcttcgtcaggctgtttccattgcgcggcgtatccaggacccc
ttggttgaattctctcaggtctgcaacagtgatgacgatattctgtgcttgaaactgcat
ccgctgcaggaacatgtagttaaggaagagctactgaatgctctgtattgcgagttcatt
aacagggtgaatgaagtgggagttgatgttaacagagccattgctcacccttatacacag
gctctaatccagtatgtctgtggtcttgggccacgtaaaggtgcacatctcctcaaaatt
ttaaaacagaacaacacacgtcttgaaaaccgcacgcagttggtcactatgtgccacatg
gggccaaaggtttttatcaactgtgccggctttattaagatagacacaaattctcttggt
gatagtacggactcttatattgaggttttggatggctctcgcgtacatccagagacctat
gaatgggccaggaagatggctgttgatgcattagaatatgatgaatcagcggaggatgct
aaccctgcaggagccctggaggagattctggaaaatccagaaagattaaaagacttggat
ttagatgcttttgcagaggagcttgagagacaggggtacggtgataaacatattactttg
tatgatattcgtgctgagctcagctgtagatacaaagaccttagaacaacctatcgggca
cctaacccagaggaggtcttcaacgtgttaactcgggagacccctgagacattttatata
ggcaagctgatcacgtgtaatgtgactggaattgcacacaggcgaccccaaggagaatcc
tatgatcaagccattaggaatgatgaaactggtctctggcagtgtccattttgccaacag
gacaacttcccagagcttagtgaggtgtggaatcactttgacagtggctcttgccctggt
caggcaattggagttaaaagtagactagacaatggtgtgactggattcatcccaaccaag
tttatcagcgataaagcagtgaagcgaccagaggagcgagtaaaggtgggaatgactgtt
cattgtcggataatgaagattaacattgaaaaatttagcgttgacttgacctgccggtca
tcagatctgatggacaaaaacaatgagtggaagctgcccaaggacacgtattatgatttt
gacagtgagtcggctgatcacaagcaagaagaagaacagaagaaaaaacagcagcgtaca
acttacataaaacgagttattgctcacccttcattccacaacattaattttaagcaagct
gaaaagatgatggaaaccatggaccaaggagatgttatcatccgccccagcagcaagggt
gaaaaccacttgactgtaacatggaaagtcagcgaaggtatttaccaacatgttgatgta
agggaggaaggcaaggagaatgctttcagcctgggatctacactctggattaacaatgag
gagtttgaagacctggatgaaatcattgccaggtttgtgcagccaatggcatcttttgca
agagatctggtaaaccataaatattttcaagattgtaacaacggagataaaaagaaacta
gaagaactgttgttaaaaacaaaaaaggaaaagccaacgttcattccatatttcatctct
gcctgcaaagaactacctggcaaattccttctgggctaccagccacgagctaaaccaagg
gtggaatatgtgactgtgacgcctgaaggctttcgctataggggacaaatcttttcaagt
gtcaatggacttttcaggtggtttaaagaccattttcatgaccccgtaccaggcatcaca
cccagcagcagcagcagtagaacaaggactccagcttctgtcaatgctacgccggctaat
atcaacctcgcagatctaacccgtgcagtcaatgcccttccgcaaaacatgacctcacaa
atgtttaatgctattgcggctgtaaccgggcagcacggccaaaatcccaatgccacaccg
gcccagtgggcttccagccagtatggttacagcggtggcagtggtggtggaagcagtgca
tatcatgtctttgctaccccagcacagcagcctgtggccacgcctctaatgacgccaagc
tattcatatgcaacccccagccagccaatcacaacccctccgttccatcagcttccagcc
agcggcacacccaccccagcgccaactcctcagtcctcccactcgcagagctcctcccac
tcacagagctcctcccactcacaaagcagttccagacacaggcagcagtccaaatcaaac
aatcacacggctgtagactgggggaaaatggcagagcagtggctgcaggaaaaggaagcc
gaacgcaggaaacagaaacatcgggtaaccccgcggccgtctcccagtcccatgatcgag
agcacccctatgtcagtagcgggggacgccactccacttctggatgaaatggaccgatag
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integrated database retrieval system
