Xenopus laevis (African clawed frog): 108709222
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Entry
108709222 CDS
T01010
Symbol
scaf4.S
Name
(RefSeq) SR-related and CTD-associated factor 4 isoform X1
KO
K13167
SR-related and CTD-associated factor 4
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
xla03021
]
108709222 (scaf4.S)
03041 Spliceosome [BR:
xla03041
]
108709222 (scaf4.S)
Transcription machinery [BR:
xla03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108709222 (scaf4.S)
Spliceosome [BR:
xla03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
108709222 (scaf4.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108709222
NCBI-ProteinID:
XP_018104358
Xenbase:
XB-GENE-17340480
UniProt:
A0A974DH23
A0A1L8H575
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All DBs
Position
2S:complement(19177632..19237126)
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AA seq
1341 aa
AA seq
DB search
MDAVNAFNQELFSLMDMKPPISRAKMILITKSAIKAIKLYKHVVQIVEKFIKKCRPEFKV
PGLYVIDSIVRQSRHQFGIDKDVFGPRFTKNLTATFHCLYTCPSEDKSKIVRVLNLWQKN
GVFRIEMIQPLLDMAAGAVAADVMTDNSMMEEDITEGSSPPSVMIPSELSGEVQEPPLAA
PVPQIPTPDAFAAVAQLFQSSQGQQLQQILQTFQQPPKPQSPAIDENVFAQVQAITSHLN
APTHQPERKTAFDKLLDRFDYDDEPDASEESKKEAPSPPLLASQQSQPPHQPFTFQADNM
QPAAYPGQLPGQVPNMDPFQPMMMGMPQEPLLQQQTPLPPNGQMLGFGMVPSQSFASMVP
PMVSEPPAHGFQNTFQMQTNEMHVQKEHQQEMPMDVEQPNVQETKRHMNEQNKSVSRSPK
RRRSRSGSRSRRSRHRRSRSRSRDRRRHSPKSRSQERRDREKEKERRQKGLPPIKSETVS
ICSTTLWIGQLDKKTTQQDVGSFLEEFGPIESINMIPPRGCAYIVMVHRQDAYRALMKLS
RGNVKVNQKAIKIAWALNKGIKSEYKQYWDVEIGVTYIPWNKVKPEQLENFCEGGMLDND
TLCPEWKALTKKPEPKDLSRNGAAEAKGVGEASPAPQVLPLLSISVRAPIPAMQVPPLQP
MSAHQPVPSIPTPGVPAVQGLPPPQGLPPLHGVPPLQGMPLPQGLPPQGLPLPQGIPLPQ
GMPPHQPIPGMGPLQPPGFPIGIPPPGFAPGVPPPPFMRPGFNPMHMPPGFLPPPGLPPP
MTPPVSIPLPTPGINIPTSTADTSSNDSSKDVSHANPSPMVPVRENMEEDVKADHGNGYK
PISSGGPNNAPGPLNPLHGDPQGGSEQGLGSGQAQGAHPRLPQGPFSGTTEAAHQGPPEG
SHQGLPDVTDHNPPESHHYTLPEGPHHGPSEISHHGPPESHHHSPPEGPHLGPPEGPRSG
PPEGVHHGPQEGSNHGPPEGPHRGPPESQFHGPPEGPYHGPQDGPYHGPPEGPYHGPPEG
PFHGPPHGSYHGPPQGPFHGPPQGPYQGPHHGPPQGPHHGPPQGPHHGPPQGPHHGPPQG
PHHGPPQGPSSGPHPGPPSTGLLGARPGLIPLQRPPGIPSSNMQRFPMSQRPVPPRMMNR
GPPPGQGGFGMPPHGMRGPLLPQGHFPRQRGPEGHGGPEERDGRPFRGERQGFPPGRETE
RFGRRSFGNRNEDERERFGRRFEDPDHERPSSRGRSNWGRGSPSRERQRDSEERNRWSVG
HERDRSHPRGRGDFLENRKSDAELDENHKPFSSRMRNAETVTERKEGKEEPAGKKPVEEQ
PQKAKSSEEAEKDTGSNPAKP
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtcaacgcctttaaccaggagctgttctcgcttatggatatgaaacctccg
atctctcgtgcaaagatgattctaattactaaatctgctattaaagcaataaagctctat
aaacatgtagttcagattgtggaaaagttcatcaaaaagtgtagacctgaattcaaggtt
cctgggctatatgtcattgattccattgtccgtcagtctcgccatcagtttggaattgac
aaagatgttttcggtccgagattcacaaagaatttaacagccactttccactgtttatat
acatgtccctcagaagataagagtaagattgtcagagtattgaacctgtggcaaaagaat
ggagtttttagaattgagatgatccaacccttgctggatatggcagcgggtgcagttgcg
gcagatgtaatgactgacaactctatgatggaagaagatatcactgaaggctcttcaccg
ccctctgtcatgatcccgtccgaactgtctggcgaagttcaagaaccacctttggctgca
cctgttcctcagatacctactcctgatgcatttgcagccgtagcacagttgtttcagagc
tcccaagggcaacagctccagcagattcttcagacttttcaacaacctccaaaaccacag
tctccagcgattgatgaaaatgtgtttgctcaggttcaggccataacatctcatttgaat
gccccaacacatcagccagagagaaaaactgcatttgataagttgcttgacagatttgat
tatgatgatgaacctgatgcatccgaggagtcaaagaaagaggctccaagccctcctttg
ttagcatcacagcagtcacagccaccacatcaacctttcacattccaagcagacaacatg
cagcctgcagcttatcctggtcagttacctggacaggtgccaaacatggatccgtttcag
cccatgatgatgggaatgccgcaggaacccctacttcagcagcagactccacttcctccg
aatggccaaatgcttgggtttggtatggttccttctcaatcctttgcatctatggtacca
cctatggtgtctgagcctcctgcccatggttttcaaaatactttccaaatgcagacaaat
gaaatgcatgtgcagaaagaacatcaacaggagatgcccatggatgtcgaacagccaaat
gttcaagaaactaaacgtcatatgaatgagcaaaacaagtctgtatccaggtcaccgaag
agacgccgttcacgatctggttctcgctcacggcgctctcgccatcgccgctcacgttcg
cgctctcgtgatagacgtcggcactccccaaaatctcgttcacaagaaagacgagatagg
gaaaaggaaaaagagcgaaggcaaaaaggacttcctcctattaaatcagagactgttagc
atttgtagtactacactctggataggacagctggacaagaaaacaacacaacaagatgtt
ggaagctttttagaagaatttggacccattgaatcaataaatatgattccaccacgtggc
tgtgcgtatattgttatggtccaccgccaagatgcatatcgtgctttaatgaaactgagc
agaggaaatgtcaaagtaaaccagaaggccataaagattgcatgggctttgaacaaagga
attaaatcagaatacaaacagtactgggatgtggagatcggagttacatacataccgtgg
aataaagtcaaacctgagcagcttgaaaatttctgtgaaggaggaatgttagataatgac
acactatgtccagaatggaaagcactaacaaagaaacctgagccaaaggatttgtctcgc
aatggtgcagctgaggctaaaggtgttggggaggcttctcctgcacctcaagttctgcca
ctattatccatttctgtccgtgcacccattcctgcaatgcaggtgccaccccttcagcca
atgtcagcccatcagccagtgccatccattccaactccaggggtgccagcagtacaagga
ttgccccctccccagggtttaccacccttgcatggggttcctccattacagggaatgcct
ctcccacaggggcttcctccacaaggattgccactccctcagggcataccactgcctcaa
ggcatgcctccccatcagcctattccaggaatgggaccactacaacctcctggctttcct
ataggtattcctcctcctggatttgcacctggagttcctcctccaccatttatgagacca
ggatttaatccaatgcatatgcctccaggctttctgcctcctcctggacttcccccacct
atgaccccacctgtttctattcctcttcccacgcctggaataaacatcccaacttctaca
gcagatacttcatctaacgactcttcaaaagatgtatctcatgcaaatcctagtccaatg
gttcctgtaagggaaaatatggaggaggacgtgaaggctgatcatggcaatggatataag
cctatctcatcaggagggccaaataatgctccagggcccttgaacccacttcacggtgat
ccacaagggggctcagaacaaggacttggttctggacaagcacagggagcccatccgaga
ctgccacaagggcctttttcaggcacaactgaagctgcccatcagggtcccccagaaggt
tcccaccaaggcctgccagacgtaacagatcacaaccctccagaaagtcatcattacact
ctacctgaaggtcctcatcatggtccatcagaaatctcccaccatggcccacctgaaagt
catcatcatagcccaccagagggtccacatctgggcccaccagaaggtcctcgttctggt
ccaccagagggtgtacatcatggtcctcaagaaggttctaatcacggtcccccagaaggt
ccgcatcgtgggccaccagaaagccagttccatgggccaccagagggcccgtatcatgga
ccacaggatgggccttatcatgggccaccagagggcccatatcatgggccaccagaaggt
ccatttcatggccccccacatggttcttatcatgggcctccacagggtccttttcatgga
cccccacaaggtccttatcaggggccccatcatggccccccacaagggccccatcatgga
cctccccagggaccccatcatggccctccgcagggaccccatcatggcccacctcaagga
ccccatcatggccccccacaaggacccagttctggcccacatcctggccctccttctact
ggtcttttaggtgcacgacctggtttaataccactacagaggccacctggaattccatct
tcaaacatgcaacgctttccaatgtctcaaaggcctgtcccccctcgtatgatgaacaga
ggcccccctccagggcagggtggttttggtatgccacctcatgggatgaggggcccttta
ctaccacaagggcactttcctagacagagaggaccggaaggtcatgggggacctgaagag
cgggatggtagaccattcagaggtgaaaggcaaggctttcctcctggtagagaaacagaa
aggtttggaaggcgttcatttggaaatcgtaatgaagatgaacgagagcgctttggtagg
cgctttgaggaccctgatcatgagcggccttctagtcgtgggaggagcaactggggtaga
ggaagtcctagccgtgaaagacaaagagactctgaggaaagaaatagatggtcagtggga
catgagagagacaggagtcaccctagaggaaggggagatttccttgagaacagaaaatct
gatgcagagcttgatgaaaaccataaaccttttagtagtagaatgcgaaatgcagaaaca
gttactgaaaggaaagagggtaaagaggaacctgcagggaaaaagccagttgaagaacag
cctcaaaaagctaaatcatctgaagaagcagaaaaggacactggatcaaatccagcaaag
ccttaa
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