Xenopus laevis (African clawed frog): 108709336
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Entry
108709336 CDS
T01010
Symbol
ptchd1.S
Name
(RefSeq) patched domain-containing protein 1
KO
K24682
patched domain-containing protein
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
xla04990
]
108709336 (ptchd1.S)
Domain-containing proteins not elsewhere classified [BR:
xla04990
]
Other domain-containing proteins
Patched domain-containing proteins
108709336 (ptchd1.S)
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Patched
Sterol-sensing
NPC1_MLD
Motif
Other DBs
NCBI-GeneID:
108709336
NCBI-ProteinID:
XP_041439576
Xenbase:
XB-GENE-17333158
UniProt:
A0A1L8H5Z1
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All DBs
Position
2S:35477969..35564705
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AA seq
914 aa
AA seq
DB search
MVLARLWGGFRSQPVTVPLLSCLCTRMLRKVLHRGLRNCFSRLGFFIASHPVFFISAPVL
ISILLGASFSRYRVEENIEYLLAPKHSLAKIERNLVDSLFPVNRSKHRLYSDLQTPGWYG
RVIITSSRRANMLDQHHTDLILKLHSAVKKIQVHRPGFNYTFAHICMLSNQKTCIVDDII
HILEELKAARSQNRTNYIITYPITMLKDGKEVYNGHQLGGVTVHSKDQVKSAEAIQLTYY
LQAINSLNEVVSEKWETNFCETVESFQKLNREVKLYPFTSSSLGQDFQKTSRVSERYLIT
SLALVVSLAVICCSMQDCVRSKPWLGLLGLVTISLSTLTAAGIINLTGGKYNSTFLGIPF
IILGHGLYGTFEMLSSWRKTREDQHVKERTAVVYADTMISFTLTTAMYLVTFGIGASPFT
NIEAARIFCRNSCIAIFFNYLYVLSFYGSSLVFTGYIENNYQHSIFCRKVPKPEILQVKS
LWYRFLMTAKFCDDTADAEETNSYESHLLVCFLKRYYCDWITNTYVKPFVILFYLVYISF
ALMGYLQVHEGSDLRNIVATETRTITYTTVQQKYFSNYSPVIGFYIYESIDYWNTSVQED
VLEYTKGFVRISWFESYLNYLRKLNVSTGLPKKNFTDILRYSFLKTPRYAHFSEDIIIPK
KYNNNVEVVASRMFLVAKTMETNREELYDLLETLRKLSLTSKVKFIVFNPSFVYMDRYAL
SIGAPLQNSCISALFLLFSSAFLVANSIINVWITLTVVSVEFGVIGFMTLWKVELDCISM
LCLIYGINYTIDNCAPLISTFILGKEFSRTKWVKNSLEVHGVAILQSYLCYTVGMIPLAA
VPSNLTRTLFRCLFLIAFVTFFHCFAILPVILAFVPPSKKKRKEKKIPENFEEIECVEMV
DLASTRVVDQITTV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggtcctggccaggctctgggggggcttcagatctcagcctgtaactgtccccctccta
agctgcctctgcactaggatgttgcggaaggttctgcacaggggcctgagaaattgcttt
tcaagacttggcttttttattgccagccatccagtgttttttatctcagccccagtattg
atctcaatcttgctgggggccagtttcagtaggtacagagtagaggagaacatcgaatat
ttgcttgcccctaaacacagcctggccaagatagagaggaacctagtggatagcctcttc
cctgtaaatcgatccaagcatcgtctgtattctgatctgcaaactcctggatggtacggc
agggtcatcatcacatcttctaggagagccaacatgctggaccaacatcacaccgatctt
atcttaaagttgcattcagcggtgaaaaagattcaagttcacagaccgggatttaattat
acatttgctcatatctgcatgttgagcaatcagaagacctgcattgtggatgatataatt
catatcctggaagaattaaaggcagctcgctcacaaaacagaacaaactatatcatcacg
tatcccatcacaatgttaaaggatggaaaagaggtgtataatggacaccagctgggcggt
gtaacagttcacagcaaagatcaggttaaatccgctgaggccattcaactcacatattac
cttcaggcaatcaactccctcaatgaagtggtgtcagaaaaatgggaaactaatttttgt
gaaactgtagaaagcttccaaaaattaaacagggaggtcaaattgtaccctttcacttct
tcatctctaggacaggattttcaaaaaaccagcagggtttcagagcgctacctgatcaca
agccttgccttagttgtctcactggctgtaatctgttgctccatgcaagactgcgtccga
agcaaaccttggcttggtcttcttggattggtaactatcagtctttctacacttactgct
gctggaatcatcaatttaacgggtggaaaatacaactctactttcctggggattccattt
atcatactaggtcatggattatatggaacatttgaaatgctgtcatcttggaggaaaact
agagaggatcagcatgtgaaagagcggactgctgttgtgtatgcagacaccatgatctct
tttacactcacaactgccatgtatttagtcacttttgggattggtgccagtcccttcacc
aacatcgaagctgcaaggattttctgtcgcaactcatgtatagcaatctttttcaactac
ctctatgtattgtcattctatggctctagccttgtgtttactgggtacattgagaacaat
taccagcatagtatattctgtagaaaggtgccaaagcctgaaatattacaggtcaagtca
ttgtggtacagatttcttatgacagcaaaattttgtgacgatacagcggatgccgaagaa
acaaattcttatgaaagtcatcttttagtttgtttcctcaagcgatattactgtgactgg
ataacaaatacatatgtgaagccttttgtaatcctcttttatctggtttatatttccttt
gccttaatgggctatttgcaggtccatgaagggtcagatctaagaaacattgtagcaacc
gagacaagaacaattacatacacaaccgtccaacaaaagtatttcagcaactatagcccg
gtgataggcttttatatttatgaatctatagattactggaatacaagtgtccaggaagat
gtactggaatacacaaaaggctttgtcagaatatcctggttcgagagctacttgaactat
ctcagaaaattaaacgtgtccactggattgcctaagaagaattttacagatattctacga
tattcatttttgaaaaccccccgatatgcacatttttcagaagacataatcatacccaaa
aaatataacaacaacgttgaagtggtagcctccagaatgtttttggttgccaaaactatg
gaaacaaacagggaagaactctacgaccttctagagactttgagaaaattgtctttgacc
tccaaagtgaaatttatagtcttcaatccatcctttgtctatatggacagatacgccttg
tcaatcggagcacctttacagaactcttgcataagtgctttgtttctgttgttttcctct
gcgtttctagttgcaaattctatcattaatgtctggatcactttaactgttgtctctgta
gaatttggagtaatcgggttcatgacattgtggaaagttgaattggactgcatatccatg
ctttgcctaatctatgggattaattacacgatagacaactgtgctcctcttatatcaact
tttatccttggaaaagaattttcaaggactaaatgggtaaaaaattctctggaagtgcac
ggggtagctattttacagagctacctttgttatactgttggtatgatccctcttgcagct
gtgccttcaaatctgacccgtacactgtttcggtgcttgtttttaatagcttttgtcaca
ttctttcactgctttgctattttgccagttatactggcatttgttccaccatcaaagaag
aaaaggaaagagaagaaaatcccagaaaacttcgaggaaatagagtgtgttgaaatggtg
gacttggctagcacgagagtagttgaccaaattacaactgtctga
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