Xenopus laevis (African clawed frog): 108709360
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Entry
108709360 CDS
T01010
Symbol
rabgef1.S
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X2
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04137
Mitophagy - animal
xla04145
Phagocytosis
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagocytosis
108709360 (rabgef1.S)
04137 Mitophagy - animal
108709360 (rabgef1.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
xla04131
]
108709360 (rabgef1.S)
Membrane trafficking [BR:
xla04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108709360 (rabgef1.S)
Protein recycling
Other Rab GTPase associated proteins
108709360 (rabgef1.S)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
CID_GANP
Motif
Other DBs
NCBI-GeneID:
108709360
NCBI-ProteinID:
XP_018104616
Xenbase:
XB-GENE-17337921
UniProt:
A0A8J0UIH2
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All DBs
Position
2S:complement(40094000..40119540)
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AA seq
531 aa
AA seq
DB search
MSLKTERRGIHVDQSELLCKKGCGYYGNPAWQGFCSKCWREEYQKARQKQIQEDWELAER
LQREEEAAYASSQGAQAGPQSLTFSKFEEKKSNEKTRKVTTVKKFFTASSKSLPKKVIEE
KSIKPGQLGRERNADILRDLKGLFAPPWDIASPAEDLKEAKAPSPSLSRQYSLETDRVSK
DFIEFLKTYQKAGHDVYKLSKIFLEAMFHKRESNIDEQSEFTQDFYQNTADKLQMYWKVS
PDKVEKVMDQIERFIMTRLYKHVFCPETTDDEKKDLTVQKRIRALHWVTLQMLCVPVNED
IAEVSDMVVKAITDIIEMDSKRIPRDKLACITRCSKHIFNAIKITRNEPASADDFLPTLI
YIVLKANPPRLQSNIQYITRFCNPSRLMTGEDGYYFTNLCCAVAFIEKLDAQSLNLSEEE
FSRYMSGQASPKKQDLEDWPADTCPGVKQMHRNLDLLTQLSKRQEHIVNEAKKLEKDLID
WTDEVTKEVKDIVEKYPLNIKTASQALAALESENIEDDKLPPPLQPQVYAG
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcaagacagagcgcagaggaatccatgttgaccagtcagagcttctgtgtaag
aaaggatgtggctactatgggaacccagcctggcaaggcttttgctcaaagtgctggagg
gaggagtaccagaaagctcggcagaagcaaatccaggaggactgggaacttgcagaacgt
ctgcaacgtgaagaggaggcggcatatgcaagcagccagggagcccaggcagggccgcaa
tccctcacattttcaaagtttgaagaaaagaaatcaaatgaaaagacgagaaaagtaact
acagtgaaaaaatttttcacagcttcatctaaaagcctcccaaagaaagtgattgaagaa
aagagtataaagccgggacagttgggcagggaacgcaatgcagatattctcagggactta
aaggggctctttgcccctccctgggatattgcttctccggctgaagatctaaaagaagca
aaagccccaagtccttctctgagccgccagtacagcttggaaactgaccgtgtgtccaag
gattttattgagtttttaaagacttaccagaaagcaggacatgatgtgtacaaactgtcc
aaaatcttcttggaagccatgtttcacaaaagggaatcaaacattgacgaacaatcggaa
tttacccaggatttttatcaaaacacagcagataaattacagatgtattggaaagtgtcc
cctgataaagttgagaaagtgatggatcaaattgagcggttcataatgacccgtctctac
aagcacgtgttctgcccagaaaccacagatgatgagaagaaagacctcacagtgcagaag
agaatcagggctttacattgggtaactcttcagatgctctgtgttcctgtaaatgaagat
attgctgaggtgtctgacatggtggtaaaggctataacagatattattgagatggactca
aaacgtattccccgtgacaaacttgcttgtatcactcgctgcagcaaacacatctttaac
gctatcaagatcacaagaaatgaaccagcctcagccgatgacttcctgcccacactcatt
tatattgttctcaaggcaaatccacctcgcttgcaatccaatattcagtacatcactaga
ttttgcaaccccagcaggctgatgactggagaggatggctattatttcactaacctgtgc
tgtgctgtggccttcatagagaaactggatgctcagtctctgaatttaagtgaagaagag
ttcagcaggtacatgtctgggcaggcttctccaaaaaagcaggacctagaggactggcca
gcagacacatgtcctggtgtaaagcagatgcacagaaaccttgacctactaacccagctg
tctaagagacaagagcatattgtaaatgaggctaagaaactagagaaggatcttattgac
tggacagatgaagtcaccaaggaagtcaaggacattgtagaaaaatatccactgaacatt
aaaacagccagccaggccctcgcagcccttgaatccgaaaatatagaagatgataagctg
ccccctccactgcagcctcaagtctatgcaggataa
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