KEGG   Xenopus laevis (African clawed frog): 108709501
Entry
108709501         CDS       T01010                                 
Symbol
kdm5b.S
Name
(RefSeq) lysine-specific demethylase 5B
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
xla  Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:xla00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:xla01009]
    108709501 (kdm5b.S)
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:xla03036]
    108709501 (kdm5b.S)
Enzymes [BR:xla01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     108709501 (kdm5b.S)
Protein phosphatases and associated proteins [BR:xla01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108709501 (kdm5b.S)
Chromosome and associated proteins [BR:xla03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108709501 (kdm5b.S)
SSDB
Motif
Pfam: PLU-1 JmjC KDM5_C-hel PHD ARID JmjN zf-C5HC2 PHD_5 PHD-1st_NSD zf-PHD-like PHD_2
Other DBs
NCBI-GeneID: 108709501
NCBI-ProteinID: XP_018104897
Xenbase: XB-GENE-17344355
UniProt: A0A8J0UCB4
LinkDB
Position
2S:64731532..64757201
AA seq 1516 aa
MEFVPPPECPVFEPTWEEFTDPFAYISKIRPIAERSGICKVRPPPDWQPPFACDVDKLHF
TPRIQRLNELEAQTRVKLNFLDQIAKFWELQGCTLKIPHVERKILDLFQLNKLVAEEGGF
DIVCRERKWTKIATKMGFSAGKAVGSHIRGHYERVLHPYNLFQSGTSLLAPVSCSKLDSI
ANDKPFFEPDLKDKEYKPHDIPQRQSVQPSENCTPARRAKRMKSEVVTVKTEPLEVSELR
PRTLRRRMGYTPNKCDKEDSSVIVKKEIVEPAIETAKVRNKKFRSQVDLYACLVCGSGSD
EDRLLLCDGCDDSYHTFCLIPPLQDVPKGDWRCPKCLAQECSKPHEAFGFEQASRDYTLR
MFGEMADNFKSDYFNMPVHMVPTELVEKEFWRLVSTIEEDVTVEYGADIASKEFGSGFPV
RDGKFRVKPEDEVYLDCGWNLNNLPVMEPSVLTHVTADICGMKLPWLYVGMCFSSFCWHI
EDHWSYSINYLHWGEPKTWYGAPGYAAEQLEEVMKKLAPELFIAQPDLLHQLVTIMNPNT
LMSHGVPIYRTNQCAGEFVITFPRAYHSGFNQGFNFAEAVNFCTVDWLPLGRQCIEHYRE
LNRYCVFSHDEMICKMAVKGDDLDIVLASSVQKDMALMIDEERALREAVRRMGVVKSEKI
DLELLADDDRQCMKCKTTCFISAVYCTCSPGVLVCLHHVEDLCNCSLYKYTLGYRYTVDD
LYPMMNAVKLRAESYDSWATEVIDALKASGNKRSLSCLRLLIQESEEKKFPDNDLLRHLQ
VVAQDADKCGTLAQQLLNGKRHTRFRSGGGKSANQLTVAELKSFVKQLNSLPCIIKQTPQ
LKDLLCHVEEFQSLSQRLLSEEMPQACELQDLLDSSFQFDLDLPLGDIRERLEQARWLEE
QQQACKDPRAFTLDVMRRLIDLGVGLSPHPSVEKAMAKLQELLTMSEHWDDRCKSLLKSR
PRQPLDSLTSTLREVEKIPAYLTSVESLRDAVQRAHEWLQEVETVQAGPRVPVLHTLVEL
VIHGRAIPVHLAPLPRLEALVVEVHAWNECASNTFLTANSPYTLLEVLCPRCDVGSSGFK
KKTKKLKEQVLGGKKKYIKPDGLQELEKALSESRDTTTAMAALGEARLREMEDLHAFRIS
NENRLLSNEEQSDWKVCVCQGEPVAPMIQCELCRSCFHTGCITAPQHGAQIWLCPQCHRS
EKPPLEKILPLLASLQRLRVRLPEGDALRYLIERTVSWQHRAQQMLSSTDFKMVQEKISS
SQLYNRWQATAGQLTETNDVSQSVGATSFSLPHEWDNRTIYIRSPFSPGRNCIPLKSLNA
ELEELLMEAQLLQVSLPEIQELYDALLNEPSPTQAPECSLSHVTHSREKGPVRQQRADRS
PVLPEAVSCIRKERSDSTDQKLKRRREGRMRKTPSFLKKRVKVAKPKDLCGRELLPEENR
TSDSQYSFTSDESDDDDAFCPADRCMEPEGDEVDWVQCDGNCSRWFHQVCVGLSAETAEK
EDYVCTHCKEITCARK
NT seq 4551 nt   +upstreamnt  +downstreamnt
atggagttcgtacccccgccggagtgcccagtttttgagcccacctgggaggaattcact
gacccattcgcgtatattagtaaaatacgaccgattgctgaacggagcgggatctgcaaa
gtccgcccgcctccggactggcagcctccatttgcttgtgatgtggataaactgcacttc
actccaaggatccaaagactgaatgagcttgaggctcagactagggtgaagctaaatttc
ctagaccaaattgctaaattttgggagttgcagggatgtacgctgaaaattcctcatgtg
gagcgaaagattctagatttatttcagctgaacaagttggtggctgaagaaggtggattt
gatatagtttgtagagaaagaaaatggaccaagatagctacaaaaatggggttttctgca
ggaaaagctgtgggttcccatattcgaggccattatgagagagttcttcacccttacaac
ttattccagtctgggactagcttactggctcctgtttcttgctcaaagctggacagtatt
gctaatgataagccattttttgaacctgatctcaaggacaaggaatacaaaccacatgat
ataccacagcgacaatctgtccaaccctccgaaaactgcactcctgccagaagggccaaa
agaatgaaatctgaggttgtcaccgttaaaacggaaccattagaagtttcagaactaaga
ccaagaacccttcgtcgtagaatgggatacaccccaaataagtgtgataaggaggacagt
tctgttatagtaaagaaagagatcgttgaaccagctatagagacggcaaaagtacggaat
aaaaaatttagaagccaggtggatttgtatgcctgtcttgtctgtggcagtggaagtgat
gaggatcgacttctgctatgtgatggatgtgatgatagttaccacaccttctgccttatc
cctccactccaagatgttcccaagggagactggagatgccctaaatgcctagcacaggag
tgtagtaaaccacatgaagcatttgggtttgaacaggcatccagagattacaccctacgc
atgtttggagagatggctgataacttcaagtctgattactttaacatgccagtgcatatg
gttcctacagagctcgtggaaaaggagttctggcgcttggtaagcaccattgaggaggat
gtgaccgtagaatatggggctgacatagcatctaaggaatttgggagtggcttccctgtg
cgtgatggtaaattccgtgttaaaccagaagatgaggtatacttggattgtggttggaat
ctgaataacttgcctgtgatggagccctcggttttaacacatgtcacagctgatatatgt
ggcatgaagttaccatggctttatgtcggcatgtgcttttcatccttttgttggcacatt
gaggatcactggagttactctattaattacctgcattggggtgagccaaaaacttggtat
ggagcgcctggatatgctgcagaacagctagaggaggtgatgaaaaaattggccccagaa
ttattcattgcgcaacctgacctcttgcatcagctggtgaccataatgaatccaaataca
ttaatgtcgcatggtgttccgatttatcgaaccaatcagtgtgctggagaatttgtgatc
acttttccacgtgcatatcatagtggctttaaccaaggctttaactttgcagaagctgtc
aacttctgcactgttgattggcttcctcttggccgtcagtgcattgaacattacagagag
ctgaacagatactgtgtattttcccatgatgagatgatctgtaagatggctgttaaggga
gatgatcttgatattgtgctagcttcttctgtacagaaagatatggctctcatgatagat
gaggagagggccctccgtgaagctgtccgaaggatgggagttgtgaagtctgaaaagatt
gaccttgaactccttgcagatgatgatcgtcagtgtatgaagtgtaagaccacctgtttc
atatcagcagtgtactgtacgtgtagccctggggtccttgtatgtcttcatcatgtggag
gacctctgtaattgttcactctacaagtacacattggggtaccgttacactgttgatgat
ttatatcccatgatgaatgctgttaagttgcgagcagaatcttatgacagctgggcaaca
gaagtcattgatgctctcaaagcttcaggcaataaaagaagtctctcctgtctgaggtta
ttgattcaggaatccgaagaaaagaaatttccagacaatgatcttttgcgccacctacag
gttgttgcacaggatgctgacaaatgtggaacactggcacaacagctacttaatgggaaa
cgtcataccaggttcagatcaggcggtggaaagtctgcaaaccagctaactgttgctgaa
cttaagtcttttgtaaagcaactcaactctctgccctgtattattaaacagacacctcag
cttaaggacctgctttgtcatgtggaagaattccagtcgctgagccaaagacttctatca
gaagaaatgccacaagcatgtgaattgcaagatctgcttgactctagttttcaatttgac
ttggacttgcctctgggggatattcgagagcgccttgaacaggctagatggcttgaagag
cagcagcaggcatgcaaggatcccagggcatttacattagatgtcatgaggagacttata
gatctaggtgtgggtctttctcctcacccttctgtagaaaaggcaatggccaaacttcag
gagctgcttaccatgtctgaacattgggatgatcggtgtaaaagccttctcaaatccagg
ccccgtcaaccacttgattccttaacatcaactttaagggaagtggaaaaaatcccagct
tatttgaccagcgttgaatccttaagagatgctgtacaaagggcccatgaatggttgcaa
gaagtggagactgtacaggctgggcccagggttcctgtactacacacactagtggaactt
gttatccatggacgagcaattcctgttcatcttgcacctctgccaaggcttgaggcacta
gtggtagaagtccatgcttggaatgaatgtgcatcaaacacttttttaacagccaactca
ccatatacactgcttgaggtcctttgtcctcgttgtgatgttggatcctctggctttaaa
aagaaaacaaagaaacttaaagagcaggtgttgggtggaaagaaaaaatatataaagcca
gatggtctgcaggaactggaaaaagcattaagtgaaagcagagacactaccacagcgatg
gcagccttgggagaagccagactacgtgagatggaggacttgcatgctttcaggatctct
aatgaaaacagacttctatccaatgaggagcagagtgactggaaggtgtgtgtctgccaa
ggagaaccagtggctcccatgatccagtgtgagctgtgcagaagctgctttcacactggc
tgtattacagctcctcaacatggagcccagatctggctgtgtcctcagtgccaccgctct
gaaaaaccacctttggagaagatcctgcctctcttagcttccctgcaacgcctgcgtgtg
cgcctgccagaaggagatgccttgcgttacttgattgaaaggacagtcagttggcaacac
cgggcacaacaaatgttatcttcaacggacttcaaaatggtgcaagagaaaattagctcc
agccagctatacaacaggtggcaagcaacagctgggcaattgacagagaccaatgatgta
tcgcagagtgtaggggccacatcattctctctacctcatgagtgggacaaccgaaccatc
tatatccgatctcctttttctcctggacgcaactgtatccctctgaaaagtctcaatgct
gagttagaagaactgttaatggaagcacagcttttgcaagtttcacttcctgaaatccaa
gagctctatgacgcacttctgaatgagcccagccctacacaagcgccagagtgcagccta
tcccatgttacccacagcagggaaaaaggacctgtgagacagcagagagcagatagaagc
ccagtactaccagaggctgtgagctgcataaggaaagaaagatcagatagcacagaccaa
aagttgaagcgccgtcgagaaggcagaatgagaaagaccccatctttcctcaaaaagagg
gttaaagtagctaaaccaaaagacttgtgtggcagagagctactccctgaggagaaccga
accagtgattcccaatactcctttacatcagatgagtctgatgatgatgatgcattttgc
cctgcagacaggtgtatggagcctgaaggtgatgaggttgactgggtacaatgtgatggg
aattgcagtcgttggtttcaccaggtctgtgttggtctttctgcggaaacagctgaaaag
gaagattatgtttgtacacactgtaaggagatcacctgtgcacgcaaataa

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