Xenopus laevis (African clawed frog): 108709738
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Entry
108709738 CDS
T01010
Symbol
col4a2.S
Name
(RefSeq) collagen alpha-2(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla04510
Focal adhesion
xla04512
ECM-receptor interaction
xla04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108709738 (col4a2.S)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108709738 (col4a2.S)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108709738 (col4a2.S)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
xla04147
]
108709738 (col4a2.S)
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108709738 (col4a2.S)
Exosome [BR:
xla04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108709738 (col4a2.S)
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108709738 (col4a2.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108709738
NCBI-ProteinID:
XP_018105335
Xenbase:
XB-GENE-17330392
UniProt:
A0A8J0UL84
LinkDB
All DBs
Position
2S:complement(107888346..107992221)
Genome browser
AA seq
1723 aa
AA seq
DB search
MTRTQSTKRCATGSKEYSYFLLKHHPVTWCVLLVVLVTVFAGNAHAGGKSYTGPCGGRDC
SQGCQCLPEKGSRGQPGPLGAQGTPGPPGLIGIAGLQGHKGDKGERGFTGVTGPSGDKGH
RGVTGFAGADGVPGHTGQGGPRGKPGHDGCNGTKGDGGDGGSHGPRGPPGIPGGFGAKGQ
KGDPFHVSIEVKNRLKGDPGEPGFNGIQGPRGFPGIAGFIGPQGNRGPRGPPGPPGPQGS
QGNRGLGYYGEKGETGDPGPPGEQSGPGVREQQHKNEILLLQYKGATGDQGEKGIPGDEG
QQAFTGEKGEEGITGFPGQRGLPGIDGARGASGEIGFPGTNGVPGLPGQNGKKGDHGERG
PQGPVTYVNGQKTGKGYEGDIGFPGQDGLYGDEGDLGDPGFPGQKGFPSTFPGPTGDTGL
KGQRGPKGYPGDPGLPAFQPGPPGIDGDPGKEGPPGKPGYPGGRIGMKGLPGPPGRDGHR
GFPGSRGFKGNKGEQGECKCFAGDESSKGPAGEPGPVGFPGLQGLSGRKGETGDRGVPGL
PGTPGTVGPAGPAGLPGPAGEKGDKVFATEKGSKGVQGDPGVPGIPGHVGYPGRNGKDGI
PGFPGPPGDGVKGLPGHAGFPGQPGIAGARGETGFPGPGFPGPKGMRGDSGDRGVSGFPG
IPGLPGPQGDCYQETDEENKIGKEGTGCRLIAPPAPTGSPGPPGLPGYNGLRGQKGFPGP
QGFDGVFGLKGVKGDPGNDSLPGPPGFPGQRGDRGNAGFPGQPGAPGLSGKPGLKGVQGE
KGVAGDRLGAPPGEQGDTGLPGLQGLKGKQGDQGIPGLQGNFGTPGTPGNKGIQGSVGAP
GAPGIPGPAALFGFPGIPGNPGMLGPQGSMGPPGPPGPRGDEGEKGPPGPVGMKGLPGEP
GDQGFVGVRGKQGAPGIPGLVGMHGLPGVKGIKGSPGMEGFHGMKGVKGRPAWRGIKGPS
GNIGFPGIKGREGIPGAKGDRGERGPPGESPQMLPEIMLLVKGEKGDQGVPGFKGTTGPK
GSKGMPGNPGQPGTPGLPGIPSFEFGDKGEIGSPGPVGHPGIPGEGGPRGIIGFPGFTGP
RGTPGFSGLPGVPGERGSYGDTGERGDTIDLPGEEGVKGQVGIPGLPGQHGIPGEKGIKG
DQGVQGIEGMKGEPGQPGERGFPGQQGLVGLPGSQGSPGLPGVHGEKGSAGFPGFPGQHG
FPGTRGIAGLDGLPGTKGIQGQPGAEITGLKGFKGLSGERGQPGEASSIVGTPGPAGLKG
TKGDQGLPGLIGITGTVGVRGLPGFSNRTGTPGDVGFPGPPGLPGFPGPMGIPGLPSKPG
VKGEIGELGSQGDYGAKGIPGDQGKLGATGVAGMPGVKGWKGNAGFHGVVGESGHPGDQG
PKGYKGDKGEHGFKGPPGQPGPVSEPPLATAEHGSPGPQGIIGPEGVRGDIGPKGVVGSP
GAPGQTGKEGLPGIPGWSAPPGNRGELGLMGQRGLDGLKGDSGVPGRAGLPGMPGRSVNI
GYLLVKHSQTDEEPMCPVGMAQLWTGYSLLYFEGQEKAHNQDLGLAGSCLQRFSTMPFLY
CNPGDVCYYANRNDKSYWLSTTVPLPMMPVVEEEIRPYISRCSVCEAPAVAIAVHSQDVS
IPHCPDGWRSLWIGYSFLMHTAAGDEGGGQSLASPGSCLEDFRATPFIECNGGRGTCHYF
ANKYSFWLTTIDQPFQSSPSADTLKAGLIQTHISRCQVCMKNL
NT seq
5172 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaacccaaagcaccaagagatgtgcaactggcagcaaagagtatagctatttt
ctgctaaaacaccatccagtcacttggtgtgtgctgcttgttgtactggtgacagtcttt
gctggaaatgcccatgctggtggcaagtcatatacagggccctgtggaggaagagactgc
agtcaagggtgccagtgtctgccggagaaaggaagtcgtggacaaccaggacctcttgga
gcacaaggtacccctggaccacctggactcataggaatagcaggtctccaaggacataag
ggagacaaaggagagcgaggatttactggagtgactggcccctctggagacaagggccat
agaggtgtgacaggttttgccggagctgatggtgtacctggacatacgggtcagggtggc
ccaagaggtaaaccaggtcatgatggttgtaatggaacaaaaggtgatggtggtgatgga
ggctcgcatggtccaagaggccctcctggaattcctggtggatttggtgccaaaggccaa
aaaggggatccgtttcatgtatccatcgaggtgaaaaatagacttaagggagatcctggt
gaaccaggttttaatggtattcagggaccaaggggttttcctggaatagcaggattcatt
gggccacagggtaatcgtggacctcgtgggccacctggacctcctgggccacagggatca
caaggcaacagaggccttggatattatggagaaaaaggagaaaccggtgatccaggtcca
cctggtgaacagagtggtccaggagtgagagaacaacagcacaaaaatgaaattctcttg
ctacaatataagggggccacgggtgaccaaggagaaaagggaattcctggtgatgaaggt
caacaagcgttcacaggagaaaaaggagaagaaggtatcacaggatttcctggacaaagg
gggttgcctggtattgatggtgcccgtggagcttcaggagaaatagggtttcctgggaca
aatggcgtgcctggattacctggacaaaatggaaaaaagggagaccatggggaacgagga
cctcaaggacctgttacctatgtaaatggtcaaaaaacaggaaaaggttatgaaggtgat
attggatttccaggacaggatggcctttatggagatgaaggagacctgggagatcctggt
tttccaggtcagaaaggatttccgagtacatttccagggcccacaggtgatacagggttg
aaaggtcaaaggggtcctaaaggttacccaggtgatccaggcttaccagcatttcagcct
ggacccccaggtatagatggagaccctggcaaagaaggaccgcctggcaaacctggatac
ccaggtggacgcattgggatgaagggattacctggacctccaggaagggatggacacaga
ggatttcctggttctcggggtttcaaaggaaataaaggtgaacaaggggaatgcaaatgt
tttgcaggagatgaatctagcaaaggccctgctggagagcctggtccagtgggtttccca
ggcttacagggtctatcaggcagaaaaggagaaaccggagatagaggagtaccagggctt
cctggaacaccgggcacagtgggtccagctggtcctgctggtcttccaggtcctgctgga
gagaagggtgataaagtatttgctacagaaaaagggtccaagggagttcaaggagaccct
ggtgttcctggcatccctgggcatgttggataccctggaagaaatggtaaagatggtatt
cctggctttccaggccctcctggagatggtgtaaaaggactcccaggtcacgctgggttt
ccaggacaacctggaattgctggtgctcgaggtgaaacgggctttcctggacccggattt
ccaggtccaaaaggcatgcgtggagattcaggagacaggggtgtgagtggattcccagga
attcctggacttccaggtccccaaggtgactgctaccaagaaacagatgaagaaaataaa
ataggaaaagaaggaactggctgccgtctaattgcacctccagctccaacaggttcccca
gggccaccaggattaccaggatataatggtttaagaggacagaaaggttttcctggacca
caaggttttgatggagtttttggattaaagggcgtcaaaggagatcctggaaatgatagt
ttacctggaccaccaggttttcctgggcaaaggggagacagaggtaatgcaggatttcct
ggccaaccaggggcaccaggtctatcaggaaaacctggccttaaaggggttcaaggagaa
aaaggagttgcaggtgatcgcttaggagctccaccaggggagcaaggcgatactggactg
cctggcttgcaaggactgaaaggaaaacaaggggatcaaggcatacctggtctgcaaggt
aactttggaacaccaggaacacctggaaacaagggtattcaaggcagtgttggggcacca
ggagcacctggaataccaggacctgcagcactatttggatttccaggaattccaggaaac
ccaggcatgctaggacctcaaggttcaatgggacctccaggtcctccagggccaagagga
gatgaaggcgagaaagggccaccaggtccagttgggatgaaagggttacctggagaacca
ggtgaccaaggatttgttggagttaggggcaaacaaggagctccaggtatccctggcttg
gttggaatgcatggacttcctggtgtgaaaggtatcaaaggttcccctggcatggaagga
ttccatggaatgaaaggagtgaaggggagacctgcatggagaggaatcaagggaccaagt
ggtaatataggatttccaggaataaaaggaagagaggggataccgggtgccaaaggtgac
cgtggggaaagaggaccaccaggagagtccccacaaatgctgccagaaataatgcttttg
gtaaaaggtgaaaaaggagatcaaggtgtgcctggatttaagggcactacgggacctaaa
ggcagtaaaggtatgcctgggaatcctgggcagccagggacacctggcttgcctggcata
ccaagctttgaatttggtgataaaggagaaattggctctcctgggcctgtcggtcatcca
ggaattccaggagaaggtggtccacgaggaattattggcttcccaggatttactggtccc
agaggtacccctggtttctctggcctacctggtgttcctggtgaaagaggcagttatgga
gatacaggagagagaggtgatactattgatttaccaggagaagaaggagtgaagggacag
gttggaatccctggattgccaggacagcacggaatacctggagaaaaaggaataaaagga
gatcagggtgttcagggtattgagggaatgaaaggtgaacctggacaaccaggagaaaga
ggattcccaggtcagcaaggcctggtaggcttaccaggctcacagggttcaccaggtcta
ccgggagtgcacggtgagaaaggaagtgctgggtttcctggattccctggtcaacatggt
tttcctggcacaagagggattgctggcctagatggtcttccaggcactaaaggaatccag
ggacaaccaggtgcggaaataactggtttaaagggatttaaaggtcttagtggtgaaaga
ggtcaacccggagaggctagttccattgtaggaacacctggacctgcaggacttaaagga
accaaaggggatcaaggtttgcctggcttaattggaattactggtacagttggagtgcgt
ggcttgcctgggttttctaacaggacaggaacaccaggagatgttggatttccaggacct
cctggactgccaggttttccaggccctatgggaatcccgggtttaccctctaaacctgga
gtaaaaggagaaataggagagctggggtcacaaggggattatggtgctaaaggtattcct
ggtgatcagggaaaactgggagctactggagttgctggaatgcctggagtgaaaggttgg
aaaggcaatgctggcttccatggtgtggttggggaatcagggcatccaggtgatcaggga
cctaaaggatataaaggtgacaaaggagaacatggctttaagggtcctcctggacaacca
ggcccagtgtctgaacctcctcttgctactgctgaacacggttcccctgggccacaagga
attattggccctgaaggggttaggggtgatataggcccaaaaggtgttgtgggtagtcca
ggtgcccctggccaaactgggaaagaaggattaccaggcataccaggatggtctgcacct
ccaggcaaccgcggagaactgggactcatgggacaaagaggacttgatggactaaaaggt
gacagtggtgtgccaggcagggcagggcttcctgggatgcctggaagaagtgtgaatatt
ggttatcttttagtcaagcacagtcaaactgatgaagagccaatgtgtcctgttggtatg
gcccagttgtggactgggtacagtctgttatattttgagggacaggaaaaagcacacaat
caagacttaggtttggctggatcttgtttacaacgcttcagtacaatgcctttcctgtac
tgcaacccaggtgatgtgtgttattatgcaaaccgtaacgataagtcttattggctttcc
accactgttcctcttccaatgatgccagtggtggaagaagaaattaggccgtatattagc
cgttgctcagtgtgcgaagctccagcagtagcaattgctgttcacagtcaggatgtcagt
atcccgcattgcccagacggatggcggagcttgtggattggatactcctttctcatgcac
actgcagcaggcgatgagggaggaggacaatccctcgcttcccctggaagttgtttggaa
gacttcagggcgactccattcattgaatgtaatggtggaagagggacctgccactacttt
gcaaacaagtacagtttctggcttactacaattgaccagcccttccagagctctccaagc
gcagatacccttaaagctgggctgattcaaactcatatcagccgatgccaagtctgcatg
aaaaatttgtaa
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integrated database retrieval system
