Xenopus laevis (African clawed frog): 108709807
Help
Entry
108709807 CDS
T01010
Symbol
prpf40b.S
Name
(RefSeq) pre-mRNA-processing factor 40 homolog B isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
xla
Xenopus laevis (African clawed frog)
Pathway
xla03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108709807 (prpf40b.S)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
xla03041
]
108709807 (prpf40b.S)
Spliceosome [BR:
xla03041
]
Complex A
U1 snRNP components
U1 related factors
108709807 (prpf40b.S)
Complex B
108709807 (prpf40b.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
DUF4936
DTW
Motif
Other DBs
NCBI-GeneID:
108709807
NCBI-ProteinID:
XP_018105461
Xenbase:
XB-GENE-17333309
UniProt:
A0A974DJ52
A0A1L8H9I5
LinkDB
All DBs
Position
2S:126956904..126989353
Genome browser
AA seq
910 aa
AA seq
DB search
MSAPDSGTAPPGQPTPFPTAPPLMPPPFMPPPGLPPPFPPIGLPPIGQRPPAIPPMPHTM
LPPMIPPLAGPPPIGQLPSLVPPLMPTMMPPAVTSSSTTAPAPGTESASSPVAQPAPTVA
KVTAEHSSPAQDIPKKKSLWTEHKAPDGRTYYYNSESKQSTWEKPDELKSKAEFLFSQCP
WKEYKSDTGKSYYYNSQTKESRWTKPKDLEELEVLIKQKDEAGAEQETQSAISSPSTALS
TDTEMTPTEEPVVSQPSIPEPVEASEVETPQEEAVQRQKDISNSDLLRTEDGVMVQPEKR
SYSWNTKEEAKQFFKELLKDKGVPSNATWEQAMKMIINDPRYSALPKLSEKKQAFNAYKA
QREKEEKEETRLRAKEAKEKLQRFLEQNEKMTSTTRYKKAEQMFGEQEVWSVVPERDRKE
IYDDVLFFLAKKEKEQAKLLRKRNVQALKNILDNMTKVSFQTTWSEAQQYLMDNPIFAED
EELQNMDKEDALICFEEHIRALEKDEAEEKERTRLRERRQQRKNRESFQVYLDELHETGQ
LHSMSTWMELYPSISTDFRFANMLGQTGSTPLDLFKFYVEELKARFYDEKKIIKDIIKDR
NFSVEVNTTFEDFAHIISFDKRAATLDAGNIKLTFNSLLEKAEARERERGKEEARKIRRK
EAAFKSMLKQSIPPLETDSAWDEVRERFVGDPAFDQITVESERIRLFKEFVHSIENECQH
HHARNKKHSKKSKKHHHKRSHSQSPSSMDRAKNKGQENVQGWDNPAAEKGSESEEENHHH
RIQKRRKRNHSESGSEISSSADSEHSSKKSKRQKKKNKKKRHKSNSPESELERDKEKIRK
EQEKEPIKERTKERECDQEAEAEPPDCRYKSQKQSTRKEKTGWDTSESELSEGELEKQRR
SLLQQLDDDQ
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcaccagactcaggaacagctccacccggacaacctactccttttcccacggct
ccgcccctgatgcctccaccttttatgccacctccagggcttccacctcccttcccacca
attgggttgccaccaattgggcagaggcctccagcaattccaccaatgccacataccatg
ctaccacccatgattccccctttggccggccctccacctattggacagcttccaagtctg
gtgcctcccctaatgccaacaatgatgccgccagcagtaacatctagttctaccactgca
cctgctccaggaacagagtctgcgagctcaccagtggctcagccagctcccacagtggcg
aaggtaactgcggagcacagttcaccagctcaggacattccaaaaaagaaatcattgtgg
actgaacacaaggcaccagatgggcgtacctactactacaactctgaaagcaagcagtct
acatgggagaagccagatgagctgaaatccaaggcagagtttctcttctcacagtgtccc
tggaaagaatataaatctgacacaggcaaatcctattattataactctcagaccaaggag
tctcgctggaccaagcccaaagacctggaggaattagaggtactaattaagcaaaaggat
gaagctggtgcagaacaggagacccagtctgctatctccagcccgtcaactgcactttca
accgatactgagatgacacccactgaggaaccagttgtatcacaacccagtataccagag
cctgtagaagcatcggaagtagaaactccacaggaagaagctgtgcaacgccagaaagat
atctcaaacagcgatctactcagaactgaggatggggttatggtacaaccagaaaagagg
tcttatagctggaacacaaaggaggaagcaaagcagttcttcaaggaactcttaaaggat
aagggtgtcccttccaatgcaacgtgggaacaagcaatgaaaatgattattaatgatcca
cgatacagtgctcttccaaaactgagtgaaaagaagcaggcttttaatgcttataaagcc
caacgagagaaagaggaaaaggaggaaaccagacttcgagccaaagaagctaaagaaaaa
ctgcagcgcttcttggagcagaatgagaagatgacttcaaccacacgctacaaaaaagct
gagcagatgtttggagagcaagaagtttggtctgttgtccctgagagagatcgtaaggag
atctatgatgatgtgctcttcttcctggcaaagaaagaaaaggagcaagcaaagctgcta
aggaaacgcaatgttcaagctctcaagaatattttagacaatatgactaaagttagcttt
caaaccacgtggtcagaggcccagcagtacctcatggacaatccaatctttgctgaggat
gaagagttgcagaatatggataaagaagatgcgcttatatgctttgaggaacacatccgt
gcactggagaaggatgaagcagaagagaaggagaggaccaggctccgagagcgacggcag
caacgcaaaaacagagaatcttttcaggtatatcttgatgagctccatgagactggccag
ttgcactcaatgtctacctggatggaattgtacccatctatcagtacagatttccgcttc
gccaatatgctgggacagacaggttcaacgcctctagacctgtttaaattctacgtggaa
gaactgaaggctcgcttttatgatgaaaaaaagatcattaaagatataataaaggatcgc
aacttcagtgtggaggtaaacacaacttttgaggactttgcacacatcatcagttttgac
aagcgggcagcaacgctagatgctggaaacattaaactgacatttaatagtctgttagag
aaagctgaagctcgggaacgtgagcgtggaaaggaggaggcccgcaaaattcgaaggaaa
gaagctgcatttaaaagtatgctgaagcagtctattccacctctggagacagacagcgca
tgggatgaagtgagggaacgctttgttggtgatcctgcctttgaccaaattactgtggaa
tcagaaagaatccgtctgtttaaagaatttgttcattcaattgagaatgaatgccagcat
caccatgccagaaacaagaagcactcgaagaaatccaagaagcaccatcataagcgttca
cattcccagtccccgagttctatggacagagcaaagaacaaaggtcaagagaatgtccaa
gggtgggacaatcctgcagcagagaaggggtcagaatccgaagaggagaatcaccaccat
cggatacagaaaaggaggaagcggaaccattcagagtctggctcagaaatctcctcttct
gcagattcagaacacagctccaagaagtccaagagacaaaaaaagaaaaataagaaaaag
cgacacaaatcgaacagtccagagagtgaacttgagagagataaagagaagattaggaag
gaacaggaaaaggaaccaataaaagagaggacaaaggagcgagaatgtgaccaagaagct
gaagctgagcccccagactgccgatacaaatcccagaagcaaagcacacggaaggagaaa
acaggctgggacacatcagagagtgagctcagtgaaggagagttggagaagcagcggaga
agcttgctacagcaactggacgatgatcagtag
DBGET
integrated database retrieval system
