Xenopus laevis (African clawed frog): 108709999
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Entry
108709999 CDS
T01010
Symbol
rnf17.S
Name
(RefSeq) RING finger protein 17 isoform X1
KO
K18405
tudor domain-containing protein 1/4/6/7
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
xla03036
]
108709999 (rnf17.S)
Chromosome and associated proteins [BR:
xla03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108709999 (rnf17.S)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TUDOR
Motif
Other DBs
NCBI-GeneID:
108709999
NCBI-ProteinID:
XP_041440505
Xenbase:
XB-GENE-6488469
UniProt:
A0A8J1MHE6
LinkDB
All DBs
Position
2S:153849803..153972073
Genome browser
AA seq
1602 aa
AA seq
DB search
MAAWTRRCIKCLNPAGCHLDLPLCPTCEELEEEVIDIEAIDSDSDEDLLMDGMSTFEKTD
EEQMDMSQNGTDMDLPPSENKHLMEQSDQSSSVSVDNQDNICERIDEALVIAKDSFQCID
EALKTLKHLEENNRQVKRNICDAVVKEFEKISHALQKRKAFLIAEIKACSAVYSTEIHKT
IQEIEEKRSCLEPGFKFAGGLKQFPLMGTYCDFKQLLGDLKVNLEYENFVHQYKSDIRFT
FEVENIFQIIDQTGKICSSKSPKFQIGEKSDSDSLSYESLDIQKVQKKHDVKTRGQRRHC
IKQELHPEYKSHQEDYNWLQKPSSPMPSDNEEKSLSSPDVIIEEIINEDYTCTPEVHKPT
AITPLQSIEKIWQFKPGTDIDGQRKNKNRKPPKKKINSCSPFVQKGSSELVNLVYVVNPC
HFYVRRYSQTKQAVILDKILKTLSNKDRANPTDLLVLGEIIAINSTKHELWCRGEIIALI
PLENKYKGKPCGPTQYKIEDVLLLKVFLLDYGSTEVFSSVRYVGNKFSRTEDCPSQYTIF
KNLCDVVRKLNLASEVQLRSVPPLAIQCAIVDIVPANPDGRWTAKCKEEFLTLVNNKCLE
MKVFKEEDNKLFVDLRKPSSFKSSSNMPASIRDALVFLDLARFRLSGAAPEKSILPRSFI
PPVVLEHRTNFTVAVSHINDPSDFYIQVVDNAEYIPFSRKIQTIYNSEESDDLKIKRPVF
GQVCMKKYTDGSWYRALVVGFSGQEEVIIKYVDFGNTDTVHVNTLRDLKDEFLDMPCKAI
CCRLAFIEPCNNAHRWSPEACGFFIKVAEHKFLNCNSLGVLLDNKLSVELFESGLESISI
NTKMIELKYASLMPGSPGLNNQWSTKTEVWDTPAILSVNHMECQEKPLLQGKALDVRVCH
VESPDRICIQWLSTENYINGLHSKMSEKYETSNPETVQWTAGMYVAVQLPVVKQWRRGLI
QNIVSDRLVEVFYFDFGMKAVVDVINIRTLEDSMLKLNKMCLECSLMDIKPAGGSENWTA
TACDVLSYYLTGAVAKIAIEEKTKQWPLPVKIWIKDEASQEADVSDFLIKQGLALKIRRS
DEPETVGKVSEKSTSITDVHELIKVTLQCDNIASETRNASEHLESDEAVSEQNLIEPYLP
PRIPDSVFSAKVSCIDNGIIYVIPESLETDLENIMNDLHKSFKCFGIMGQYSWKEGEGCL
IKGSDARPYRGKVLKILGGEMILVQYVDYGCIEKILLCHTSAIVFNPDVPLFCIPCQLHK
TLPVGNKWQPDAIELLKELLLDRNVKVHVAEPPTVPGGVASVDIYCNSASVSRILEQYSH
CVPEDSDKRSKFERSYESKHCLMKNQGNQYCEANMFRKSDLDKVFDLSFENLLSPDLETP
VLPRYTVPSLPAPGEHFLVKVRHIQTPNKVYISRNLTNNLLCDLDENTLCCDPDEDSLTS
KIIWINKHADKLLRLTNFRSEMPCLAEYSDGKIYRAKLLSVSSYDPPKFFVDFVDYGSAK
SVATESLFQLPAELIHYPVEAVKVHLAGIKPPIEDFEAERLPYCPEWSFRAVRACMDILE
KDTFMALRTGSSSELSVYLYEESGNEHVYKALVEEGLVEFDE
NT seq
4809 nt
NT seq
+upstream
nt +downstream
nt
atggcggcctggacccggcggtgcattaagtgtcttaatcctgcgggctgtcacctggat
ttacctctgtgtcctacatgtgaggaattggaggaagaggtgattgacatagaagccatt
gactctgatagtgacgaagaccttttgatggatggaatgtcaacttttgaaaagacagat
gaggaacaaatggatatgtcgcaaaatggtactgacatggatctacctccaagcgaaaac
aaacatttaatggagcaatcggatcagagcagttcagtttctgttgataaccaggataac
atctgtgaaagaatcgatgaagcattggtcatagcaaaggattcttttcagtgcatagat
gaggctttaaagactttaaaacatttggaagagaacaatagacaagttaaaagaaatatt
tgtgatgctgttgttaaggaatttgaaaagatatcgcatgctctccagaaaaggaaggcg
ttcctaattgctgagataaaggcatgttctgcagtgtacagtacagaaatacataaaaca
attcaagaaatcgaggagaagaggagttgtttggaaccaggattcaaatttgctggcgga
ttaaaacaatttccattgatgggcacatactgtgattttaagcagctactgggagacttg
aaagtcaacttggaatatgaaaactttgtgcaccaatataagtctgatataagatttact
tttgaggttgaaaatatatttcagataattgaccaaactggaaaaatctgtagttctaaa
tcaccaaaatttcaaattggagagaaaagcgattcagattcattaagttatgagtcctta
gacattcaaaaagtgcaaaaaaaacacgatgtgaaaacacgcggacaacgacgacactgc
ataaaacaagaactacatcctgaatataaaagccaccaagaggattacaattggttgcaa
aaaccttcctccccaatgccctcggataacgaagagaaatcactgtctagccctgatgtt
atcatagaagagattatcaacgaagattacacctgtactccagaagtccataaacctact
gccattactcctcttcaaagcattgagaaaatttggcaattcaaaccaggaacggacatt
gatggtcagcggaagaacaaaaaccggaaacccccgaaaaaaaagataaatagctgttca
ccttttgtacaaaaaggttcgtctgaacttgtaaaccttgtttatgtagtaaatccttgc
cacttttatgtccgacgatactctcagacaaagcaagcagttattcttgataaaatacta
aaaactttaagtaacaaagaccgggcaaacccaacggatctcttagtgctgggagaaatt
attgctataaatagcactaaacacgaattatggtgccgtggcgagatcatcgcattaatt
ccgttggaaaataaatacaaaggaaaaccttgtggaccaacacagtacaaaattgaggat
gttcttctgttgaaagtttttttgctagactatggaagcactgaagttttttcttcagta
agatacgttggaaacaagttctcaagaacagaagattgtccatctcagtacaccatattt
aaaaatttgtgtgacgttgtaagaaagttgaatttggcatcagaggtccagttgagatca
gtgcctccccttgctatccagtgcgctatagtggatattgttcctgctaatccggatggc
cgttggacagcaaaatgcaaagaagaatttttaacattggtgaacaataagtgtcttgaa
atgaaagtctttaaggaagaagataataagttgtttgttgatctgaggaaaccgtcctca
tttaaaagcagtagtaatatgcctgcctccattcgagatgccctagtttttctggattta
gcaaggtttcgcctttcaggggctgctccagagaagagtattttaccaaggagctttatc
ccaccagtagtgcttgagcacaggaccaactttacagttgccgtttctcatataaacgac
ccgtctgacttctacatccaagtggtggacaacgcagagtatataccattctcgagaaaa
atacaaaccatttataactctgaagaatcggatgatctaaaaatcaaacgaccagttttt
gggcaagtctgcatgaagaagtacacagatggtagttggtacagagctctagttgttggt
ttttcaggtcaagaagaagttataataaaatatgtagactttggcaatactgacacagtt
catgtgaacacattaagagacctgaaagatgaattcttagacatgccatgtaaggctata
tgctgcagacttgcttttattgagccatgtaataatgcacatcggtggagtccagaagca
tgtggattttttataaaggtggctgaacataaatttctcaattgcaattccttaggtgtt
ttactggataacaagctatctgttgaattgtttgaatctggtttggaaagtatcagcatc
aacacaaagatgattgaattaaaatacgcttccttaatgcctggttccccaggcctaaac
aatcaatggtcgacaaagacagaagtgtgggacacaccagctattttatctgtaaatcat
atggaatgtcaagaaaagccattgctccaggggaaagcactggatgtgcgtgtctgccat
gtagaatctcctgacagaatatgtatacagtggttatctacagagaactacatcaatgga
ttgcattccaaaatgtctgaaaaatacgaaacctctaatcctgaaactgtccagtggacg
gctggaatgtatgttgctgttcagcttccagtcgttaagcagtggcggagaggactaatc
caaaatattgtgtctgatcgactagtagaggtattttactttgattttggaatgaaggct
gtggtagatgtaatcaacataagaacacttgaggacagtatgttaaaactgaataaaatg
tgtctggaatgttctttgatggatataaagccagctggaggaagcgaaaactggactgca
acagcttgtgatgttctctcatattaccttactggcgctgtggcaaaaatagcaattgag
gagaaaacaaaacagtggccactgcctgtaaagatctggataaaagatgaagcaagccag
gaagctgatgtttctgacttccttataaaacagggtttagcactgaaaatacgaagatca
gacgaacctgagactgtgggcaaagtcagtgaaaagtcaacttccattacagatgttcat
gaattgataaaagtaacattacaatgtgacaatatagcttctgagacaagaaatgcaagt
gagcacctggaatctgatgaagcagtgtctgaacaaaacctaattgagccctacttgcct
cctcgtattcctgattcagtattcagtgcaaaagtcagctgtatagacaatggcattata
tatgtgattccagaatcattagaaacagatcttgaaaatattatgaatgaccttcacaag
tccttcaaatgttttggtattatgggacaatatagctggaaggaaggagaagggtgtctc
attaaaggatcagatgctaggccatacagaggaaaagttcttaaaattcttggtggcgaa
atgatattggttcaatatgtggattacggatgtattgaaaaaatccttttgtgccatact
tctgccattgtcttcaatcccgatgttccacttttttgcataccttgtcagctacataaa
acacttcccgttggtaacaagtggcagccagacgcaatagaacttcttaaagagctactt
ctggatagaaatgtcaaagttcatgttgcggagccccccacagtacctggaggtgttgca
tctgttgatatctattgcaacagtgcatctgtgtctcgtattctggagcagtattcccac
tgtgttccagaagattctgacaaaagatcaaaatttgaaagaagctatgagtccaaacat
tgtctaatgaaaaaccaaggaaatcagtactgtgaggcaaatatgttccgaaagtcagat
ctggataaggtttttgatctaagttttgagaacttactttcacctgatctggaaacacca
gttttgcccagatatactgtaccatcactgcctgctccaggagagcatttccttgttaaa
gttcggcacatacagacaccgaataaagtatatatcagcaggaacttaacaaataacctc
ctgtgtgatctagatgagaatacactgtgctgtgaccctgatgaggattctctaacgtca
aagattatatggatcaacaaacatgccgataaactgttacgcttgactaattttagatca
gaaatgccgtgtcttgctgaatacagtgatggaaaaatatacagagccaagttgctgtct
gtttcaagctatgaccctccaaagttttttgtggactttgtagactatggatcagcaaaa
tcagtagcaacagaaagcttgttccagctgcctgctgagctaatccactatcctgtagaa
gcagtaaaagtccacctggctggaattaagccccccatcgaagacttcgaagcagagagg
cttccttactgcccagaatggagtttcagagccgtcagagcttgcatggatatacttgaa
aaagatacttttatggctttacgtacggggtcctcctcagagctttctgtatatttgtat
gaggaaagtggaaacgagcatgtttacaaggcactagtggaagagggcttagttgaattt
gatgaatga
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