Xenopus laevis (African clawed frog): 108710147
Help
Entry
108710147 CDS
T01010
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X3
KO
K24356
collagen type XXV alpha
Organism
xla
Xenopus laevis (African clawed frog)
Brite
KEGG Orthology (KO) [BR:
xla00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
xla00536
]
108710147
Glycosaminoglycan binding proteins [BR:
xla00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108710147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108710147
NCBI-ProteinID:
XP_018106711
UniProt:
A0A8J0UP03
LinkDB
All DBs
Position
1L:complement(71100666..71341003)
Genome browser
AA seq
700 aa
AA seq
DB search
MLVTGENRKNGEKSQGCHRGKLGGAHDWVRTLPSVLAFVFSLLSMASFIYLNMKSNDLQG
RVWALQHGKSGNIAFHMPGLSVDQLNSIVQEKVDQLLSQRSYEHMAKLRISREAPADCNC
PAGPPGQRGKRGRRGEPGPPGPPGPKGDKGDQGDQGPRGLPGYPTMAALHSNQILTVKGD
QGQAGAPGPPGPPGPPGPRGPPGDTGKDGPRGLSGVPGETGTPGEQGLMGPMGPPGQKGS
IGAPGIAGVDGQKGEQGNIGAPGIDGEPGMKGDPGEQGDKGDPGEGGPKGEIGAKGDPGS
SAAGIKGEPGEPGRFGQKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGEI
GPPGRGERGSTGGPGPKGEPGESGSRGPKGSKGDAGSKGDSGPIGPRGPPGQKGDQGATE
IIDYNGNIQEALQRITAITVTGPPGPPGPPGLPGSKGDGGPVGPPGVDGEQGPKGSKGNH
GDSGTSGEKGGIGLPGLPGANGMKGEKGDHGSPGPHGASIIGPPGPPGPHGPPGPMGPHG
LTGPKGEPGVNGLKGLRGEPGQKGERGPLGLPGASGLDGKPGPRGNDGPIGPSGPAGPKG
DRGEKGAVGDPGPRGPYGLPGKDGEPGLDGFPGPRGEKGDPGERGEKGEKGKKGKKGPKG
EKGEQGAPGLDAPCPLGPDGLPMPGCWQKGVTPWLVAKKR
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgttggtaacaggagagaacagaaagaatggagaaaagtcccagggatgtcataggggc
aagcttggaggggcacacgactgggttaggactttacccagtgtattggcatttgtgttc
tcccttttgtccatggcatcatttatttatctgaatatgaaatccaatgacctgcaggga
agggtttgggcactgcagcatggcaagtctgggaacattgctttccatatgccaggatta
tctgtggatcagcttaactccatcgtccaggagaaagtggatcagctcctgtcccagagg
tcctatgaacacatggcaaagctccgaatctcaagagaagcaccagcagactgcaactgc
ccagcaggcccacctggacagcgaggaaaaaggggaagaagaggtgaacctggacctcct
ggtcctcctggcccaaagggagacaagggtgatcaaggtgatcagggacctcggggtttg
ccaggctatcctacaatggctgctctccatagtaatcagatcctcacagtcaagggtgat
caaggacaagcaggagctccaggcccaccaggcccaccaggtccaccgggccctaggggt
cctccaggagatactggcaaagatggcccaaggggattgtctggagtaccaggggagaca
gggacaccaggtgaacaaggcttaatgggtccaatggggcctcctggacaaaaggggtcc
attggtgcacctggaattgctggagtagatggtcaaaagggagaacaaggaaacattggg
gcaccaggaattgatggagaacctggaatgaagggtgatccaggtgaacaaggagataag
ggtgatcccggggaaggtggccctaaaggggaaattggagctaagggggatccaggatct
tctgctgcaggaataaagggtgagccaggagaacctggacgttttgggcagaagggtgaa
ccagggcttcctgggcttcctggacttccggggattaagggagagccaggatttctaggg
cctcaaggagaacctggattaccaggcttgccagggactaagggggaacggggagaaatt
ggcccacctggaaggggagagaggggcagtaccggtggacctggaccaaagggggaacca
ggtgaatctggatctagaggcccaaaggggtcaaagggtgatgctggaagcaaaggagat
tctggccccattggtcctagagggcctccaggtcaaaaaggggatcaaggggctactgag
attatagactacaatgggaatattcaggaagccttgcagaggattacagccattactgtt
acgggaccgcctggaccacctgggccacctggtttgccaggatcaaagggagatggaggt
cctgttggtcctccaggagttgatggggagcagggccctaaaggatcaaagggtaaccat
ggtgattctgggacatcgggagagaagggaggaattggtctccctggtttgccgggtgca
aatggaatgaaaggagagaaaggagatcatggttcccctgggcctcacggagcttctatc
atcggtccccccggacctccagggccacatggcccccctggacctatgggaccacacgga
cttacagggccaaagggtgaaccaggggtaaatggtcttaaaggattgaggggtgagcca
ggtcaaaagggtgaaagaggaccactgggtcttccaggagcatctggcttagacggaaag
ccaggacccagggggaatgatggccccattggtccttctggcccagctggtccaaaagga
gacagaggagaaaaaggagctgttggggatccaggaccacgaggaccttatggtttacct
ggcaaagacggagagcctggtctagacggttttccaggtcctcgtggagaaaaaggtgac
cctggagaaaggggagaaaagggggaaaagggaaagaaaggcaaaaaagggcctaaaggg
gagaaaggagaacagggtgcccctggattagatgcaccttgcccattgggaccagatgga
cttccaatgcctggttgttggcaaaagggagtgaccccatggcttgttgccaaaaagaga
tga
DBGET
integrated database retrieval system
